bella-companion 0.0.38__py3-none-any.whl → 0.0.42__py3-none-any.whl

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Files changed (41) hide show
  1. bella_companion/eucovid/beast_configs/GLM.xml +170 -0
  2. bella_companion/eucovid/beast_configs/MLP.xml +170 -0
  3. bella_companion/eucovid/beast_configs/Nonparametric.xml +399 -0
  4. bella_companion/eucovid/data/case_data.tsv +346 -0
  5. bella_companion/eucovid/data/change_dates.tsv +8 -0
  6. bella_companion/eucovid/data/msa.fasta +79500 -0
  7. bella_companion/eucovid/data/osi.tsv +376 -0
  8. bella_companion/eucovid/data/predictors/all/closedborders_7e_nt.tsv +35 -0
  9. bella_companion/eucovid/data/predictors/all/dist_7e_ls.tsv +35 -0
  10. bella_companion/eucovid/data/predictors/all/flight_7e_ls.tsv +35 -0
  11. bella_companion/eucovid/data/predictors/all/flight_pop_x_7e_ls.tsv +35 -0
  12. bella_companion/eucovid/data/predictors/all/osi_x_7e_ls.tsv +35 -0
  13. bella_companion/eucovid/data/predictors/all/osi_y_7e_ls.tsv +35 -0
  14. bella_companion/eucovid/data/predictors/all/pop_x_7e_ls.tsv +35 -0
  15. bella_companion/eucovid/data/predictors/all/pop_y_7e_ls.tsv +35 -0
  16. bella_companion/eucovid/data/predictors/all/sharedborders_7e_nt.tsv +35 -0
  17. bella_companion/eucovid/data/predictors/changetimes_all_7e.tsv +6 -0
  18. bella_companion/eucovid/data/predictors/changetimes_flights_4e.tsv +3 -0
  19. bella_companion/eucovid/data/predictors/flight_pop_x_4e_ls.tsv +20 -0
  20. bella_companion/platyrrhine/beast_config.xml +117 -0
  21. bella_companion/platyrrhine/data/change_times.csv +12 -0
  22. bella_companion/platyrrhine/data/traits.csv +122 -0
  23. bella_companion/platyrrhine/data/trees.nwk +100 -0
  24. bella_companion/simulations/beast_configs/epi-multitype/GLM.xml +81 -0
  25. bella_companion/simulations/beast_configs/epi-multitype/MLP.xml +81 -0
  26. bella_companion/simulations/beast_configs/epi-multitype/Nonparametric.xml +65 -0
  27. bella_companion/simulations/beast_configs/epi-skyline/GLM.xml +71 -0
  28. bella_companion/simulations/beast_configs/epi-skyline/MLP.xml +73 -0
  29. bella_companion/simulations/beast_configs/epi-skyline/Nonparametric.xml +57 -0
  30. bella_companion/simulations/beast_configs/fbd-2traits/GLM.xml +101 -0
  31. bella_companion/simulations/beast_configs/fbd-2traits/MLP.xml +98 -0
  32. bella_companion/simulations/beast_configs/fbd-2traits/Nonparametric.xml +70 -0
  33. bella_companion/simulations/beast_configs/fbd-no-traits/GLM.xml +88 -0
  34. bella_companion/simulations/beast_configs/fbd-no-traits/MLP.xml +86 -0
  35. bella_companion/simulations/beast_configs/fbd-no-traits/Nonparametric.xml +62 -0
  36. {bella_companion-0.0.38.dist-info → bella_companion-0.0.42.dist-info}/METADATA +1 -1
  37. bella_companion-0.0.42.dist-info/RECORD +76 -0
  38. bella_companion-0.0.38.dist-info/RECORD +0 -41
  39. {bella_companion-0.0.38.dist-info → bella_companion-0.0.42.dist-info}/WHEEL +0 -0
  40. {bella_companion-0.0.38.dist-info → bella_companion-0.0.42.dist-info}/entry_points.txt +0 -0
  41. {bella_companion-0.0.38.dist-info → bella_companion-0.0.42.dist-info}/top_level.txt +0 -0
bella_companion/eucovid/data/case_data.tsv ADDED
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bella_companion/eucovid/data/change_dates.tsv ADDED
@@ -0,0 +1,8 @@
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