bella-companion 0.0.28__py3-none-any.whl → 0.0.30__py3-none-any.whl

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Files changed (13) hide show
  1. bella_companion/eucovid/beast_configs/GLM.xml +125 -405
  2. bella_companion/eucovid/beast_configs/MLP.xml +108 -288
  3. bella_companion/eucovid/run_beast.py +11 -17
  4. bella_companion/platyrrhine/beast_config.xml +2 -2
  5. bella_companion/platyrrhine/run_beast.py +4 -7
  6. bella_companion/simulations/beast_configs/epi-multitype/MLP.xml +1 -1
  7. bella_companion/simulations/beast_configs/epi-skyline/MLP.xml +1 -1
  8. bella_companion/simulations/beast_configs/fbd-2traits/MLP.xml +2 -2
  9. bella_companion/simulations/beast_configs/fbd-no-traits/MLP.xml +2 -2
  10. {bella_companion-0.0.28.dist-info → bella_companion-0.0.30.dist-info}/METADATA +1 -1
  11. {bella_companion-0.0.28.dist-info → bella_companion-0.0.30.dist-info}/RECORD +13 -13
  12. {bella_companion-0.0.28.dist-info → bella_companion-0.0.30.dist-info}/WHEEL +0 -0
  13. {bella_companion-0.0.28.dist-info → bella_companion-0.0.30.dist-info}/entry_points.txt +0 -0
{bella_companion-0.0.28.dist-info → bella_companion-0.0.30.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: bella-companion
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- Version: 0.0.28
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+ Version: 0.0.30
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  Summary:
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  Author: gabriele-marino
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  Author-email: gabmarino.8601@gmail.com
{bella_companion-0.0.28.dist-info → bella_companion-0.0.30.dist-info}/RECORD RENAMED
@@ -1,8 +1,8 @@
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  bella_companion/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  bella_companion/cli.py,sha256=0SwDxkDPqvsp36kGnrBMLPIhAQM8PIpNXrztZayqmDc,2409
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  bella_companion/eucovid/__init__.py,sha256=09Ld_G7fZvCDCgEWsmaOyLVQ8pFc9QHAGnXKJ9Zm2AM,81
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- bella_companion/eucovid/beast_configs/GLM.xml,sha256=YMvcyeSRIGQOhSSoj7FV0R-5wZHcGWwf9bKxamJ0q9k,20739
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- bella_companion/eucovid/beast_configs/MLP.xml,sha256=SGJVUYyi1ULU7zxx8xn9aiKZNQQ3D9ruyYRsDcFjPzo,16139
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+ bella_companion/eucovid/beast_configs/GLM.xml,sha256=b5rAeKVEam3u2AGSJsm7EHB6LcC0l9bp1SyZT2QyjpI,10892
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+ bella_companion/eucovid/beast_configs/MLP.xml,sha256=M0_B6t0bZpjCAQqAmjrFshW96pt9sNREcoLUjwchX6Q,10616
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  bella_companion/eucovid/beast_configs/Nonparametric.xml,sha256=n-t4sUfDS9AzC02tbIk5mx_RDg2l62ELhdR3I3_jjHE,17783
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  bella_companion/eucovid/data/case_data.tsv,sha256=XaSzZh5NcEMVt9d_XlQ19T8UuEkHGrjpSFXhe9IycNg,12412
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  bella_companion/eucovid/data/change_dates.tsv,sha256=_pmVFYiL4X9Pd79uYVgyz3sKeRap7xVcXk0OjqVhuVQ,227
@@ -20,27 +20,27 @@ bella_companion/eucovid/data/predictors/all/sharedborders_7e_nt.tsv,sha256=pPVT5
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  bella_companion/eucovid/data/predictors/changetimes_all_7e.tsv,sha256=hH0xXD2lr_8RPQRqvENv6clPHauAXH22SGQHb3hlfzs,120
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  bella_companion/eucovid/data/predictors/changetimes_flights_4e.tsv,sha256=XEepIXKRwcKknJq4-ovKlorvCypGi67B8znuQ5f1LTg,60
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  bella_companion/eucovid/data/predictors/flight_pop_x_4e_ls.tsv,sha256=tMR9-tuGtC3rVABXUtNdV9irUX-9aCCVb_fwksHTn8U,1068
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- bella_companion/eucovid/run_beast.py,sha256=FYeqqG2_S3o_NrmYqyyll82CR0sbYtI7QuRv5MIrRVY,3748
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+ bella_companion/eucovid/run_beast.py,sha256=etaD_4SVdy_Pmz5s4jvDLzp2K_QV8leEY8Pe3xySBsk,3443
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  bella_companion/platyrrhine/__init__.py,sha256=dIx6exNz-vuKiG5FZumvq74QUWcIEFd3L6ErqnOa83c,274
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- bella_companion/platyrrhine/beast_config.xml,sha256=8A6E5iPu9FqDL3UdlsqDbabLFlC6Qhfa4Ta47niRkVA,7090
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+ bella_companion/platyrrhine/beast_config.xml,sha256=bLzavt-Zd8cmSgQQnlCBfZ9KyM7d1inOGx12VNjPFb4,7056
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  bella_companion/platyrrhine/data/change_times.csv,sha256=tedobHbaY7-6M3V6F6HSqGAU9dpeeajR5mu1XGJfp6w,68
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  bella_companion/platyrrhine/data/traits.csv,sha256=N_mCnaM9Gy0Qot7-l_mK0vMvr7e_5BZ4bgUHpcoG9UM,3949
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  bella_companion/platyrrhine/data/trees.nwk,sha256=lpSiGUG5s3zE--IKPOyWrJ5vpJb_xAPnfxychs3YNIs,488232
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  bella_companion/platyrrhine/results.py,sha256=qosxqstTy7uadHARRt1WqmxZzxnQ3hiTjtw6V-YWKGA,2556
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- bella_companion/platyrrhine/run_beast.py,sha256=xYpK_QS5Qr-8jvq3_s-uXBW5yGsxE3c8AvHd12N6PFY,2552
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+ bella_companion/platyrrhine/run_beast.py,sha256=_9Ex2B65zu6I68uY6s3_dohPYPaFP3E7u-uyWuDLAJc,2477
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  bella_companion/platyrrhine/summarize_logs.py,sha256=82N7rcmLthCyQqmP4Yub4KUsIjNzQl9vEuFLMvIv03o,951
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  bella_companion/simulations/__init__.py,sha256=ShYRdp1iSjnS_SzcsH-8jbqXz6P1nyRQZqAtPZJCMVE,454
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  bella_companion/simulations/beast_configs/epi-multitype/GLM.xml,sha256=VymAYsaZVuB3EPE0DCQSXpKepVq8pPjKaB5yhEpaVkE,4334
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- bella_companion/simulations/beast_configs/epi-multitype/MLP.xml,sha256=J-OVblMRmk4XRhz9DHhLpMwaIzqSqYZ7Yq7dTMvQW1s,4094
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+ bella_companion/simulations/beast_configs/epi-multitype/MLP.xml,sha256=AoJyjvVcwKtut64d7sB2gnnenx5sXyuTTNCivykUyqU,4077
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  bella_companion/simulations/beast_configs/epi-multitype/Nonparametric.xml,sha256=DfCMcLM53b-XP9oIiQ9wJWOVTEP3GnoZaL5BMzLLfIQ,3208
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  bella_companion/simulations/beast_configs/epi-skyline/GLM.xml,sha256=7LtJhU7o7aQsnWK7ZIKj-mzmHgCn_RjxvKKbLIlp1Go,3619
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- bella_companion/simulations/beast_configs/epi-skyline/MLP.xml,sha256=ovjFleUnTgyrT8T1uaKboUsL-ZFLCaQN5mk4HadFPU0,3443
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+ bella_companion/simulations/beast_configs/epi-skyline/MLP.xml,sha256=ptoLM0FLDp54bUSxPm12qIvOYWyBkWR1e9VWVWjgU8E,3426
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  bella_companion/simulations/beast_configs/epi-skyline/Nonparametric.xml,sha256=LTiatqeAMiFfdD1leQ5TrGaJhsYwlkbMDpxqhVFOgUQ,2561
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  bella_companion/simulations/beast_configs/fbd-2traits/GLM.xml,sha256=Iff0eAShKLeOnlTmNu6044Wljtla3yckqo2LZ7mP6LY,5897
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- bella_companion/simulations/beast_configs/fbd-2traits/MLP.xml,sha256=E8sgfOAJI4rkbCVhGYa-HwM44ItwxVs4pIXkQOGNTtY,5462
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+ bella_companion/simulations/beast_configs/fbd-2traits/MLP.xml,sha256=RvF70fcnvoBcJxjyT4nELlFm94atSZpKm9d1aS-cJZ4,5428
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  bella_companion/simulations/beast_configs/fbd-2traits/Nonparametric.xml,sha256=ev6ZfMeCwMyK54G_4O8g-tbgoxoD3asxt71x91Cb1QY,3618
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  bella_companion/simulations/beast_configs/fbd-no-traits/GLM.xml,sha256=Caq7Gxqx-wYAu3_YkMikVqni3DjBv1Wt00sc1Upo1X8,4743
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- bella_companion/simulations/beast_configs/fbd-no-traits/MLP.xml,sha256=_EzDVPrU6Y5ZfzkVn---Sp62KeBZuRCZfoYqxblLq8I,4309
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+ bella_companion/simulations/beast_configs/fbd-no-traits/MLP.xml,sha256=JE_cGh2DW5yPAXyXXr0D3DlovmV-aIbze7qrhENHK3w,4275
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  bella_companion/simulations/beast_configs/fbd-no-traits/Nonparametric.xml,sha256=m2xaHZwskCFInvVY1QH1fwQqH6p_fgESlPX2BbBeUhk,2822
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  bella_companion/simulations/features.py,sha256=DZOBpJGlQ0UinqUZYbEtoemZ2eQGVLV_i-DfpW31qJI,104
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  bella_companion/simulations/figures/__init__.py,sha256=aBYbJntH4egFmkSSWiVMYDEApXPYxJD7eA3TCPNNegM,658
@@ -69,7 +69,7 @@ bella_companion/utils/__init__.py,sha256=UtMwPK9dWf9NAl0ic8CSsgdW7aSm-5J49OqgvD7
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  bella_companion/utils/beast.py,sha256=TBa0cLklX1_tXqoQE4LRYvds7mLg_9fS2-6U6OHENHo,2184
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  bella_companion/utils/explain.py,sha256=uP7HPyn2YiykAI69BQV3RooDpC6qKoCLXfp3Uibp4zk,1475
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  bella_companion/utils/slurm.py,sha256=xEyf-Jxk8fy71t3fko_Ic9WtUFSdLFE3w4tR17gaBPw,1868
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- bella_companion-0.0.28.dist-info/METADATA,sha256=f_4at3vdN5Z4FMjq-1C71qUa1raHCBL4TaouU3S0TDw,576
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- bella_companion-0.0.28.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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- bella_companion-0.0.28.dist-info/entry_points.txt,sha256=rSeKoAhmjnQqAYFcXBv0gAM2ViJfJe0D8_dD-fWrXeg,50
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- bella_companion-0.0.28.dist-info/RECORD,,
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+ bella_companion-0.0.30.dist-info/METADATA,sha256=DndfOvgcd48t3HfXC_ZsSuJ_PKC6GBOx-6hxkDSZPKY,576
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+ bella_companion-0.0.30.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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+ bella_companion-0.0.30.dist-info/entry_points.txt,sha256=rSeKoAhmjnQqAYFcXBv0gAM2ViJfJe0D8_dD-fWrXeg,50
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+ bella_companion-0.0.30.dist-info/RECORD,,