bella-companion 0.0.22__py3-none-any.whl → 0.0.24__py3-none-any.whl

bella_companion/eucovid/beast_configs/MLP.xml

@@ -175,10 +175,6 @@
             <log idref="samplingProportionSP"/>
             <log idref="migrationRateSP"/>
             <log idref="migrationRate"/>
-            <plate var="n" range="$(layersRange)">
-                <log idref="migrationW$(n)"/>
-            </plate>
-
             <log spec="TypedTreeStatsLogger" includeRootEdge="true" typeLabel="type" typeSet="@typeSet">
                 <typedTree id="typeMappedTree" spec="TypeMappedTree" bdmmDistrib="@BDMMPrime" startTypePriorProbs="@typeFrequencies" mapOnInit="false" remapOnLog="true" typeLabel="type" typeTraitSet="@typeTraitSet" untypedTree="@treeBDMMPrime"/>
             </log>

bella_companion/eucovid/run_beast.py

@@ -47,7 +47,7 @@ def run_beast():
             ]
         ),
         base_log_dir / "Nonparametric",
-        mem_per_cpu="12000",
+        mem_per_cpu="64000",
     )
 
     os.makedirs(output_dir / "all-predictors-GLM", exist_ok=True)
@@ -62,7 +62,7 @@ def run_beast():
             ]
         ),
         base_log_dir / "all-predictors-GLM",
-        mem_per_cpu="12000",
+        mem_per_cpu="64000",
     )
 
     os.makedirs(output_dir / "flights-GLM", exist_ok=True)
@@ -77,7 +77,7 @@ def run_beast():
             ]
         ),
         base_log_dir / "flights-GLM",
-        mem_per_cpu="12000",
+        mem_per_cpu="64000",
     )
 
     os.makedirs(output_dir / "all-predictors-MLP", exist_ok=True)
@@ -93,7 +93,7 @@ def run_beast():
             ]
         ),
         base_log_dir / "all-predictors-MLP",
-        mem_per_cpu="12000",
+        mem_per_cpu="64000",
     )
 
     os.makedirs(output_dir / "flights-MLP", exist_ok=True)
@@ -109,7 +109,7 @@ def run_beast():
             ]
         ),
         base_log_dir / "flights-MLP",
-        mem_per_cpu="12000",
+        mem_per_cpu="64000",
     )
 
     with open(base_output_dir / "eucovid_job_ids.json", "w") as f:

{bella_companion-0.0.22.dist-info → bella_companion-0.0.24.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bella-companion
-Version: 0.0.22
+Version: 0.0.24
 Summary: 
 Author: gabriele-marino
 Author-email: gabmarino.8601@gmail.com

{bella_companion-0.0.22.dist-info → bella_companion-0.0.24.dist-info}/RECORD

@@ -2,7 +2,7 @@ bella_companion/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 bella_companion/cli.py,sha256=0SwDxkDPqvsp36kGnrBMLPIhAQM8PIpNXrztZayqmDc,2409
 bella_companion/eucovid/__init__.py,sha256=09Ld_G7fZvCDCgEWsmaOyLVQ8pFc9QHAGnXKJ9Zm2AM,81
 bella_companion/eucovid/beast_configs/GLM.xml,sha256=ng13sapf8qe1OGm3xSjl-N_4Fa0gWEOPU172z2XpyQM,11731
-bella_companion/eucovid/beast_configs/MLP.xml,sha256=7Cr354n3nQ75UNEg2x1YDjOEFMD7kzXBhGWvRO0815M,11387
+bella_companion/eucovid/beast_configs/MLP.xml,sha256=qLvfP3qEIa_XEDigXrPGbegKDLddifRvoZjNmoDDmFo,11268
 bella_companion/eucovid/beast_configs/Nonparametric.xml,sha256=oDOxiXPlL5zwuvyOPkdZmdSprivYNbDScjT1IvWnZFI,11548
 bella_companion/eucovid/data/case_data.tsv,sha256=XaSzZh5NcEMVt9d_XlQ19T8UuEkHGrjpSFXhe9IycNg,12412
 bella_companion/eucovid/data/change_dates.tsv,sha256=_pmVFYiL4X9Pd79uYVgyz3sKeRap7xVcXk0OjqVhuVQ,227
@@ -20,7 +20,7 @@ bella_companion/eucovid/data/predictors/all/sharedborders_7e_nt.tsv,sha256=pPVT5
 bella_companion/eucovid/data/predictors/changetimes_all_7e.tsv,sha256=hH0xXD2lr_8RPQRqvENv6clPHauAXH22SGQHb3hlfzs,120
 bella_companion/eucovid/data/predictors/changetimes_flights_4e.tsv,sha256=XEepIXKRwcKknJq4-ovKlorvCypGi67B8znuQ5f1LTg,60
 bella_companion/eucovid/data/predictors/flight_pop_x_4e_ls.tsv,sha256=tMR9-tuGtC3rVABXUtNdV9irUX-9aCCVb_fwksHTn8U,1068
-bella_companion/eucovid/run_beast.py,sha256=WD4aTggmvpmTbZyp2K7-bVAhldj_vDm2_70WKIvx9HE,3807
+bella_companion/eucovid/run_beast.py,sha256=nBSwRItcxlfRJeXwGe1oFuO4Q-_xTY4u651YW6V-OmY,3807
 bella_companion/platyrrhine/__init__.py,sha256=dIx6exNz-vuKiG5FZumvq74QUWcIEFd3L6ErqnOa83c,274
 bella_companion/platyrrhine/beast_config.xml,sha256=8A6E5iPu9FqDL3UdlsqDbabLFlC6Qhfa4Ta47niRkVA,7090
 bella_companion/platyrrhine/data/change_times.csv,sha256=tedobHbaY7-6M3V6F6HSqGAU9dpeeajR5mu1XGJfp6w,68
@@ -69,7 +69,7 @@ bella_companion/utils/__init__.py,sha256=UtMwPK9dWf9NAl0ic8CSsgdW7aSm-5J49OqgvD7
 bella_companion/utils/beast.py,sha256=TBa0cLklX1_tXqoQE4LRYvds7mLg_9fS2-6U6OHENHo,2184
 bella_companion/utils/explain.py,sha256=uP7HPyn2YiykAI69BQV3RooDpC6qKoCLXfp3Uibp4zk,1475
 bella_companion/utils/slurm.py,sha256=v5DaG7YHVyK8KRFptgGDC6I8jxEhyJuMVK9N08pZSAI,1812
-bella_companion-0.0.22.dist-info/METADATA,sha256=uxSXIAfLje7ZHUK8pFpH-ZjsTnojZpnVoDH93L4D5vU,576
-bella_companion-0.0.22.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
-bella_companion-0.0.22.dist-info/entry_points.txt,sha256=rSeKoAhmjnQqAYFcXBv0gAM2ViJfJe0D8_dD-fWrXeg,50
-bella_companion-0.0.22.dist-info/RECORD,,
+bella_companion-0.0.24.dist-info/METADATA,sha256=P6X18g_ClPSSr_Q1m-0W9ajzOLeWKouQm8Z5yLhk6yQ,576
+bella_companion-0.0.24.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
+bella_companion-0.0.24.dist-info/entry_points.txt,sha256=rSeKoAhmjnQqAYFcXBv0gAM2ViJfJe0D8_dD-fWrXeg,50
+bella_companion-0.0.24.dist-info/RECORD,,