bella-companion 0.0.20__py3-none-any.whl → 0.0.22__py3-none-any.whl

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Files changed (6) hide show
  1. bella_companion/eucovid/beast_configs/MLP.xml +1 -0
  2. bella_companion/eucovid/run_beast.py +5 -0
  3. {bella_companion-0.0.20.dist-info → bella_companion-0.0.22.dist-info}/METADATA +1 -1
  4. {bella_companion-0.0.20.dist-info → bella_companion-0.0.22.dist-info}/RECORD +6 -6
  5. {bella_companion-0.0.20.dist-info → bella_companion-0.0.22.dist-info}/WHEEL +0 -0
  6. {bella_companion-0.0.20.dist-info → bella_companion-0.0.22.dist-info}/entry_points.txt +0 -0
bella_companion/eucovid/beast_configs/MLP.xml CHANGED
@@ -93,6 +93,7 @@
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  <state spec="State" storeEvery="5000">
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  <stateNode id="treeBDMMPrime" spec="RandomTree" taxa="@alignment" populationModel="@popFunc" trait="@dateTraitSet"/>
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  <stateNode idref="processLength"/>
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+ <stateNode idref="Re"/>
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  <stateNode idref="samplingProportion"/>
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  <plate var="n" range="$(layersRange)">
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  <stateNode spec="RealParameter" id="migrationW$(n)" value="0"/>
bella_companion/eucovid/run_beast.py CHANGED
@@ -47,6 +47,7 @@ def run_beast():
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  ]
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  ),
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  base_log_dir / "Nonparametric",
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+ mem_per_cpu="12000",
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  )
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  os.makedirs(output_dir / "all-predictors-GLM", exist_ok=True)
@@ -61,6 +62,7 @@ def run_beast():
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  ]
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  ),
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  base_log_dir / "all-predictors-GLM",
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+ mem_per_cpu="12000",
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  )
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  os.makedirs(output_dir / "flights-GLM", exist_ok=True)
@@ -75,6 +77,7 @@ def run_beast():
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  ]
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  ),
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  base_log_dir / "flights-GLM",
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+ mem_per_cpu="12000",
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  )
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  os.makedirs(output_dir / "all-predictors-MLP", exist_ok=True)
@@ -90,6 +93,7 @@ def run_beast():
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  ]
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  ),
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  base_log_dir / "all-predictors-MLP",
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+ mem_per_cpu="12000",
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  )
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  os.makedirs(output_dir / "flights-MLP", exist_ok=True)
@@ -105,6 +109,7 @@ def run_beast():
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  ]
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  ),
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  base_log_dir / "flights-MLP",
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+ mem_per_cpu="12000",
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  )
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  with open(base_output_dir / "eucovid_job_ids.json", "w") as f:
{bella_companion-0.0.20.dist-info → bella_companion-0.0.22.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: bella-companion
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- Version: 0.0.20
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+ Version: 0.0.22
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  Summary:
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  Author: gabriele-marino
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  Author-email: gabmarino.8601@gmail.com
{bella_companion-0.0.20.dist-info → bella_companion-0.0.22.dist-info}/RECORD RENAMED
@@ -2,7 +2,7 @@ bella_companion/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  bella_companion/cli.py,sha256=0SwDxkDPqvsp36kGnrBMLPIhAQM8PIpNXrztZayqmDc,2409
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  bella_companion/eucovid/__init__.py,sha256=09Ld_G7fZvCDCgEWsmaOyLVQ8pFc9QHAGnXKJ9Zm2AM,81
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  bella_companion/eucovid/beast_configs/GLM.xml,sha256=ng13sapf8qe1OGm3xSjl-N_4Fa0gWEOPU172z2XpyQM,11731
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- bella_companion/eucovid/beast_configs/MLP.xml,sha256=IWb3jV3UJLsdUh3SOO3px6PUKh85GCFr6J2Q3OfoMyI,11351
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+ bella_companion/eucovid/beast_configs/MLP.xml,sha256=7Cr354n3nQ75UNEg2x1YDjOEFMD7kzXBhGWvRO0815M,11387
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  bella_companion/eucovid/beast_configs/Nonparametric.xml,sha256=oDOxiXPlL5zwuvyOPkdZmdSprivYNbDScjT1IvWnZFI,11548
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  bella_companion/eucovid/data/case_data.tsv,sha256=XaSzZh5NcEMVt9d_XlQ19T8UuEkHGrjpSFXhe9IycNg,12412
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  bella_companion/eucovid/data/change_dates.tsv,sha256=_pmVFYiL4X9Pd79uYVgyz3sKeRap7xVcXk0OjqVhuVQ,227
@@ -20,7 +20,7 @@ bella_companion/eucovid/data/predictors/all/sharedborders_7e_nt.tsv,sha256=pPVT5
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  bella_companion/eucovid/data/predictors/changetimes_all_7e.tsv,sha256=hH0xXD2lr_8RPQRqvENv6clPHauAXH22SGQHb3hlfzs,120
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  bella_companion/eucovid/data/predictors/changetimes_flights_4e.tsv,sha256=XEepIXKRwcKknJq4-ovKlorvCypGi67B8znuQ5f1LTg,60
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  bella_companion/eucovid/data/predictors/flight_pop_x_4e_ls.tsv,sha256=tMR9-tuGtC3rVABXUtNdV9irUX-9aCCVb_fwksHTn8U,1068
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- bella_companion/eucovid/run_beast.py,sha256=L_Ng1kG8o94kK3HNeVj1Yq6FsPjolGWWxfnxRrcQeu0,3662
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+ bella_companion/eucovid/run_beast.py,sha256=WD4aTggmvpmTbZyp2K7-bVAhldj_vDm2_70WKIvx9HE,3807
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  bella_companion/platyrrhine/__init__.py,sha256=dIx6exNz-vuKiG5FZumvq74QUWcIEFd3L6ErqnOa83c,274
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  bella_companion/platyrrhine/beast_config.xml,sha256=8A6E5iPu9FqDL3UdlsqDbabLFlC6Qhfa4Ta47niRkVA,7090
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  bella_companion/platyrrhine/data/change_times.csv,sha256=tedobHbaY7-6M3V6F6HSqGAU9dpeeajR5mu1XGJfp6w,68
@@ -69,7 +69,7 @@ bella_companion/utils/__init__.py,sha256=UtMwPK9dWf9NAl0ic8CSsgdW7aSm-5J49OqgvD7
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  bella_companion/utils/beast.py,sha256=TBa0cLklX1_tXqoQE4LRYvds7mLg_9fS2-6U6OHENHo,2184
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  bella_companion/utils/explain.py,sha256=uP7HPyn2YiykAI69BQV3RooDpC6qKoCLXfp3Uibp4zk,1475
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  bella_companion/utils/slurm.py,sha256=v5DaG7YHVyK8KRFptgGDC6I8jxEhyJuMVK9N08pZSAI,1812
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- bella_companion-0.0.20.dist-info/METADATA,sha256=pGZB36iKT-AQkn580-K_JdgIhfb0p7RtqIqolcH4s0k,576
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- bella_companion-0.0.20.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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- bella_companion-0.0.20.dist-info/entry_points.txt,sha256=rSeKoAhmjnQqAYFcXBv0gAM2ViJfJe0D8_dD-fWrXeg,50
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- bella_companion-0.0.20.dist-info/RECORD,,
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+ bella_companion-0.0.22.dist-info/METADATA,sha256=uxSXIAfLje7ZHUK8pFpH-ZjsTnojZpnVoDH93L4D5vU,576
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+ bella_companion-0.0.22.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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+ bella_companion-0.0.22.dist-info/entry_points.txt,sha256=rSeKoAhmjnQqAYFcXBv0gAM2ViJfJe0D8_dD-fWrXeg,50
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+ bella_companion-0.0.22.dist-info/RECORD,,