bella-companion 0.0.16__py3-none-any.whl → 0.0.18__py3-none-any.whl
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- bella_companion/cli.py +16 -11
- bella_companion/eucovid/__init__.py +3 -0
- bella_companion/eucovid/beast_configs/GLM.xml +200 -0
- bella_companion/eucovid/beast_configs/MLP.xml +200 -0
- bella_companion/eucovid/beast_configs/Nonparametric.xml +214 -0
- bella_companion/eucovid/data/case_data.tsv +346 -0
- bella_companion/eucovid/data/change_dates.tsv +8 -0
- bella_companion/eucovid/data/msa.fasta +79500 -0
- bella_companion/eucovid/data/osi.tsv +376 -0
- bella_companion/eucovid/data/predictors/all/closedborders_7e_nt.tsv +35 -0
- bella_companion/eucovid/data/predictors/all/dist_7e_ls.tsv +35 -0
- bella_companion/eucovid/data/predictors/all/flight_7e_ls.tsv +35 -0
- bella_companion/eucovid/data/predictors/all/flight_pop_x_7e_ls.tsv +35 -0
- bella_companion/eucovid/data/predictors/all/osi_x_7e_ls.tsv +35 -0
- bella_companion/eucovid/data/predictors/all/osi_y_7e_ls.tsv +35 -0
- bella_companion/eucovid/data/predictors/all/pop_x_7e_ls.tsv +35 -0
- bella_companion/eucovid/data/predictors/all/pop_y_7e_ls.tsv +35 -0
- bella_companion/eucovid/data/predictors/all/sharedborders_7e_nt.tsv +35 -0
- bella_companion/eucovid/data/predictors/changetimes_all_7e.tsv +6 -0
- bella_companion/eucovid/data/predictors/changetimes_flights_4e.tsv +3 -0
- bella_companion/eucovid/data/predictors/flight_pop_x_4e_ls.tsv +20 -0
- bella_companion/eucovid/run_beast.py +111 -0
- bella_companion/platyrrhine/__init__.py +5 -0
- bella_companion/{fbd_empirical → platyrrhine}/beast_config.xml +1 -1
- bella_companion/platyrrhine/data/trees.nwk +100 -0
- bella_companion/{fbd_empirical → platyrrhine}/results.py +3 -22
- bella_companion/{fbd_empirical → platyrrhine}/run_beast.py +3 -3
- bella_companion/{fbd_empirical → platyrrhine}/summarize_logs.py +2 -2
- {bella_companion-0.0.16.dist-info → bella_companion-0.0.18.dist-info}/METADATA +2 -2
- {bella_companion-0.0.16.dist-info → bella_companion-0.0.18.dist-info}/RECORD +34 -13
- bella_companion/fbd_empirical/__init__.py +0 -5
- bella_companion/fbd_empirical/data/trees.nwk +0 -100
- /bella_companion/{fbd_empirical → platyrrhine}/data/change_times.csv +0 -0
- /bella_companion/{fbd_empirical → platyrrhine}/data/traits.csv +0 -0
- {bella_companion-0.0.16.dist-info → bella_companion-0.0.18.dist-info}/WHEEL +0 -0
- {bella_companion-0.0.16.dist-info → bella_companion-0.0.18.dist-info}/entry_points.txt +0 -0
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