bella-companion 0.0.15__py3-none-any.whl → 0.0.17__py3-none-any.whl
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- bella_companion/fbd_empirical/beast_config.xml +1 -1
- bella_companion/fbd_empirical/data/trees.nwk +100 -100
- bella_companion/fbd_empirical/results.py +0 -19
- {bella_companion-0.0.15.dist-info → bella_companion-0.0.17.dist-info}/METADATA +2 -2
- {bella_companion-0.0.15.dist-info → bella_companion-0.0.17.dist-info}/RECORD +7 -7
- {bella_companion-0.0.15.dist-info → bella_companion-0.0.17.dist-info}/WHEEL +0 -0
- {bella_companion-0.0.15.dist-info → bella_companion-0.0.17.dist-info}/entry_points.txt +0 -0
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@@ -46,27 +46,8 @@ def _plot_predictions(output_dir: Path):
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for i in range(len(change_times) + 1)
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]
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).to_numpy()
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median = np.median(estimates, axis=0)
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lower = np.percentile(estimates, 2.5, axis=0)
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upper = np.percentile(estimates, 97.5, axis=0)
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color = colors[rate][type]
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plt.fill_between( # pyright: ignore
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time_bins,
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[lower[0], *lower],
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[upper[0], *upper],
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step="pre",
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alpha=0.25,
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color=color,
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)
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for estimate in estimates:
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plt.step( # pyright: ignore
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time_bins, [estimate[0], *estimate], color=color, alpha=0.15
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)
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plt.step( # pyright: ignore
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time_bins, [median[0], *median], color=color, label=type
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)
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.1
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Name: bella-companion
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Version: 0.0.
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Version: 0.0.17
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Summary:
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Author: gabriele-marino
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Author-email: gabmarino.8601@gmail.com
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@@ -12,5 +12,5 @@ Classifier: Programming Language :: Python :: 3.12
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Requires-Dist: arviz (>=0.22.0,<0.23.0)
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Requires-Dist: bella-lumiere (>=0.0.14,<0.0.15)
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Requires-Dist: dotenv (>=0.9.9,<0.10.0)
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Requires-Dist: phylogenie (>=3.
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Requires-Dist: phylogenie (>=3.1.1,<4.0.0)
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Requires-Dist: seaborn (>=0.13.2,<0.14.0)
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@@ -1,11 +1,11 @@
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bella_companion/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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bella_companion/cli.py,sha256=D-kQuj0I-g5Vm5-mXdOZoio68mhOBpJ3jVG8B2Kwvn4,2190
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bella_companion/fbd_empirical/__init__.py,sha256=FgzjaEpwZImvBsJs17ghF0ltZvhFmgmkTGGF3HgdsGo,284
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bella_companion/fbd_empirical/beast_config.xml,sha256=
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bella_companion/fbd_empirical/beast_config.xml,sha256=8A6E5iPu9FqDL3UdlsqDbabLFlC6Qhfa4Ta47niRkVA,7090
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bella_companion/fbd_empirical/data/change_times.csv,sha256=tedobHbaY7-6M3V6F6HSqGAU9dpeeajR5mu1XGJfp6w,68
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bella_companion/fbd_empirical/data/traits.csv,sha256=N_mCnaM9Gy0Qot7-l_mK0vMvr7e_5BZ4bgUHpcoG9UM,3949
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bella_companion/fbd_empirical/data/trees.nwk,sha256=
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bella_companion/fbd_empirical/results.py,sha256=
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bella_companion/fbd_empirical/data/trees.nwk,sha256=lpSiGUG5s3zE--IKPOyWrJ5vpJb_xAPnfxychs3YNIs,488232
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bella_companion/fbd_empirical/results.py,sha256=GiODVJNzSa2Qws_KSoKwbXW6nkpWpcJqi43XVxXFj4M,2562
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bella_companion/fbd_empirical/run_beast.py,sha256=60t8tbqlgdv86JwBk_DvUQ8i7TpThz0EmwEv-OkBAQM,2560
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bella_companion/fbd_empirical/summarize_logs.py,sha256=f3NgdyrCmbD5eHDHYwiA8ggh4b3rZ63SrlfDt0FAZmc,955
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bella_companion/simulations/__init__.py,sha256=ShYRdp1iSjnS_SzcsH-8jbqXz6P1nyRQZqAtPZJCMVE,454
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@@ -48,7 +48,7 @@ bella_companion/utils/__init__.py,sha256=UtMwPK9dWf9NAl0ic8CSsgdW7aSm-5J49OqgvD7
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bella_companion/utils/beast.py,sha256=TBa0cLklX1_tXqoQE4LRYvds7mLg_9fS2-6U6OHENHo,2184
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bella_companion/utils/explain.py,sha256=uP7HPyn2YiykAI69BQV3RooDpC6qKoCLXfp3Uibp4zk,1475
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bella_companion/utils/slurm.py,sha256=v5DaG7YHVyK8KRFptgGDC6I8jxEhyJuMVK9N08pZSAI,1812
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bella_companion-0.0.
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bella_companion-0.0.
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bella_companion-0.0.
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bella_companion-0.0.
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bella_companion-0.0.17.dist-info/METADATA,sha256=qYxYfMIkltCBPnEyG1eOLKHwZV3vQPZjG9phWbZeGvw,576
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bella_companion-0.0.17.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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bella_companion-0.0.17.dist-info/entry_points.txt,sha256=rSeKoAhmjnQqAYFcXBv0gAM2ViJfJe0D8_dD-fWrXeg,50
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bella_companion-0.0.17.dist-info/RECORD,,
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File without changes
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File without changes
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