bella-companion 0.0.13__py3-none-any.whl → 0.0.14__py3-none-any.whl

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Files changed (5) hide show
  1. bella_companion/fbd_empirical/run_beast.py +4 -2
  2. {bella_companion-0.0.13.dist-info → bella_companion-0.0.14.dist-info}/METADATA +1 -1
  3. {bella_companion-0.0.13.dist-info → bella_companion-0.0.14.dist-info}/RECORD +5 -5
  4. {bella_companion-0.0.13.dist-info → bella_companion-0.0.14.dist-info}/WHEEL +0 -0
  5. {bella_companion-0.0.13.dist-info → bella_companion-0.0.14.dist-info}/entry_points.txt +0 -0
bella_companion/fbd_empirical/run_beast.py CHANGED
@@ -1,6 +1,6 @@
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  import json
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  import os
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- from itertools import combinations
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+ from itertools import product
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  from pathlib import Path
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  import numpy as np
@@ -14,7 +14,9 @@ from bella_companion.utils import submit_job
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  def _get_migration_rates_init(types: list[str], init_rate: float = 1) -> str:
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  mus: list[float] = []
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- for t1, t2 in combinations(types, 2):
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+ for t1, t2 in product(types, types):
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+ if t1 == t2:
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+ continue
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  traits1 = np.array(list(map(int, t1.split("_"))))
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  traits2 = np.array(list(map(int, t2.split("_"))))
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  mus.append(init_rate if np.sum(np.abs(traits1 - traits2)) == 1 else 0)
{bella_companion-0.0.13.dist-info → bella_companion-0.0.14.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: bella-companion
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- Version: 0.0.13
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+ Version: 0.0.14
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  Summary:
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  Author: gabriele-marino
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  Author-email: gabmarino.8601@gmail.com
{bella_companion-0.0.13.dist-info → bella_companion-0.0.14.dist-info}/RECORD RENAMED
@@ -5,7 +5,7 @@ bella_companion/fbd_empirical/data/change_times.csv,sha256=tedobHbaY7-6M3V6F6HSq
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  bella_companion/fbd_empirical/data/traits.csv,sha256=cxNKYmgtBCKHsm9qnOpS29Rkx9cQKe0oxpgaXSIukJg,5422
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  bella_companion/fbd_empirical/data/trees.nwk,sha256=JAsdfGhTIzGmJz6g6-0s5SVfqNuxawOMc9gbt0srue4,539385
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  bella_companion/fbd_empirical/results.py,sha256=0FENY5EpgNQ6rwPsEiOT2ZEO5oBbIAK6TzPvk11SDnk,3116
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- bella_companion/fbd_empirical/run_beast.py,sha256=MPW4A10NiXc8y3JS3ZN17DL-Oh8IoIdTv1Y5QLLrcxo,3229
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+ bella_companion/fbd_empirical/run_beast.py,sha256=daDuRgkVlXTZdjtoanNzgQpBw8uXv1D7hoivCnhLM6U,3265
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  bella_companion/fbd_empirical/summarize_logs.py,sha256=OoT43DMjim9o4qsjYCgGKnBKp3dHXzVP6sVtzqR8lMQ,955
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  bella_companion/simulations/__init__.py,sha256=ShYRdp1iSjnS_SzcsH-8jbqXz6P1nyRQZqAtPZJCMVE,454
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  bella_companion/simulations/features.py,sha256=DZOBpJGlQ0UinqUZYbEtoemZ2eQGVLV_i-DfpW31qJI,104
@@ -35,7 +35,7 @@ bella_companion/utils/__init__.py,sha256=UtMwPK9dWf9NAl0ic8CSsgdW7aSm-5J49OqgvD7
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  bella_companion/utils/beast.py,sha256=TBa0cLklX1_tXqoQE4LRYvds7mLg_9fS2-6U6OHENHo,2184
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  bella_companion/utils/explain.py,sha256=uP7HPyn2YiykAI69BQV3RooDpC6qKoCLXfp3Uibp4zk,1475
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  bella_companion/utils/slurm.py,sha256=v5DaG7YHVyK8KRFptgGDC6I8jxEhyJuMVK9N08pZSAI,1812
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- bella_companion-0.0.13.dist-info/METADATA,sha256=q3qdmoDikj48UF6LQoqQbQkBOmNdQKl9Bi4ONzay63Q,577
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- bella_companion-0.0.13.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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- bella_companion-0.0.13.dist-info/entry_points.txt,sha256=rSeKoAhmjnQqAYFcXBv0gAM2ViJfJe0D8_dD-fWrXeg,50
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- bella_companion-0.0.13.dist-info/RECORD,,
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+ bella_companion-0.0.14.dist-info/METADATA,sha256=TqkINLE8EFexOUFK0E1rNHoZHQgLgMsPZa7I_D2hGAI,577
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+ bella_companion-0.0.14.dist-info/WHEEL,sha256=sP946D7jFCHeNz5Iq4fL4Lu-PrWrFsgfLXbbkciIZwg,88
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+ bella_companion-0.0.14.dist-info/entry_points.txt,sha256=rSeKoAhmjnQqAYFcXBv0gAM2ViJfJe0D8_dD-fWrXeg,50
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+ bella_companion-0.0.14.dist-info/RECORD,,