bdext 0.1.67__py3-none-any.whl → 0.1.69__py3-none-any.whl

bdeissct_dl/dl_model.py

@@ -29,7 +29,7 @@ def relu_plus_one(x):
 LOSS_FUNCTIONS = {
     REPRODUCTIVE_NUMBER: "mean_absolute_percentage_error",
     INFECTION_DURATION: "mean_absolute_percentage_error",
-    INCUBATION_PERIOD: "mean_absolute_percentage_error",
+    INCUBATION_PERIOD: "mae",
     UPSILON: 'mae',
     RHO: 'mean_absolute_percentage_error',
     X_C: "mean_absolute_percentage_error",

bdeissct_dl/tree_encoder.py

@@ -38,30 +38,30 @@ def get_write_handle(path, temp_suffix=''):
 def scale(Y, SF):
     for col in (Y.keys() if type(Y) == dict else Y.columns):
         for rate in RATE_PARAMETERS:
-            if col.startswith(rate):
+            if col == rate:
                 Y[col] *= SF
         for time in TIME_PARAMETERS:
-            if col.startswith(time):
+            if col == time:
                 Y[col] /= SF
 
 
 def scale_back(Y, SF):
     for col in (Y.keys() if type(Y) == dict else Y.columns):
         for rate in RATE_PARAMETERS:
-            if col.startswith(rate):
+            if col == rate:
                 Y[col] /= SF
         for time in TIME_PARAMETERS:
-            if col.startswith(time):
+            if col == time:
                 Y[col] *= SF
 
 
 def scale_back_array(Y, SF, columns):
     for i, col in enumerate(columns):
         for rate in RATE_PARAMETERS:
-            if col.startswith(rate):
+            if col == rate:
                 Y[:, i] /= SF
         for time in TIME_PARAMETERS:
-            if col.startswith(time):
+            if col == time:
                 Y[:, i] *= SF
 
 

{bdext-0.1.67.dist-info → bdext-0.1.69.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bdext
-Version: 0.1.67
+Version: 0.1.69
 Summary: Estimation of BDEISS-CT parameters from phylogenetic trees.
 Home-page: https://github.com/modpath/bdeissct
 Author: Anna Zhukova

{bdext-0.1.67.dist-info → bdext-0.1.69.dist-info}/RECORD

@@ -1,17 +1,17 @@
 README.md,sha256=Ngj8bt0Yu3LUsvwblmMtUqqjvGyqxv6ku2_cYCb5_DQ,6539
 bdeissct_dl/__init__.py,sha256=QPEiIP-xVqGQgydeqN_9AZgT26IYWeJC4-JlHnd8Rjo,296
 bdeissct_dl/bdeissct_model.py,sha256=sQclYN5V8utw6wEMDN0_Ua-0NeuyuWHG_e0_jQIUe8Q,1986
-bdeissct_dl/dl_model.py,sha256=CT3tRvH7y7_guyR7SUELv0eLEVpGU_PcXci1lIGIb9M,3705
+bdeissct_dl/dl_model.py,sha256=eXyFHqgJtXovzPFYn9xW5-Th92f28Ci6iuRHEwSd8y0,3678
 bdeissct_dl/estimator.py,sha256=QBWA8R0pBPZPd3JvItdJS2lN1J3VqvdJqBMzCi-NADs,3336
 bdeissct_dl/model_serializer.py,sha256=s1yBzQjhtr-w7eT8bTsNkG9_xnYRZrUc3HkeOzNZpQY,2464
 bdeissct_dl/scaler_fitting.py,sha256=9X0O7-Wc9xGTI-iF-Pfp1PPoW7j01wZUfJVZf8ky-IU,1752
 bdeissct_dl/sumstat_checker.py,sha256=TQ0nb86-BXmusqgMnOJusLpR4ul3N3Hi886IWUovrMI,1846
 bdeissct_dl/training.py,sha256=H5wA3V72nhc9Km7kvKmzjCYw0N1itMGDbj9c-Uat5BU,8350
-bdeissct_dl/tree_encoder.py,sha256=vH__CDPNVvayhNoK6_Z4xJA9_R78G1RvneG0RY2aj-0,18340
+bdeissct_dl/tree_encoder.py,sha256=V-7_Kis9x9JacI_mF7rWRGGKvxn7AWFCto7LkgRawBw,18286
 bdeissct_dl/tree_manager.py,sha256=UXxUVmEkxwUhKpJeACVgiXZ8Kp1o_hiv8Qb80b6qmVU,11814
-bdext-0.1.67.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
-bdext-0.1.67.dist-info/METADATA,sha256=Ky7QOtU9xcrVvo_kjsPpx5jsaIcDwXFOYpoxYoCJaug,7479
-bdext-0.1.67.dist-info/WHEEL,sha256=tZoeGjtWxWRfdplE7E3d45VPlLNQnvbKiYnx7gwAy8A,92
-bdext-0.1.67.dist-info/entry_points.txt,sha256=lcAwyk-Fc0G_w4Ex7KDivh7h1tzSA99PRMcy971b-nM,208
-bdext-0.1.67.dist-info/top_level.txt,sha256=z4dadFfcLghr4lwROy7QR3zEICpa-eCPT6mmcoHeEJY,12
-bdext-0.1.67.dist-info/RECORD,,
+bdext-0.1.69.dist-info/LICENSE,sha256=OXLcl0T2SZ8Pmy2_dmlvKuetivmyPd5m1q-Gyd-zaYY,35149
+bdext-0.1.69.dist-info/METADATA,sha256=XR1qaonSH4YNjna_G_yMzDwYdCrvFHw75msvPJ2XMUo,7479
+bdext-0.1.69.dist-info/WHEEL,sha256=tZoeGjtWxWRfdplE7E3d45VPlLNQnvbKiYnx7gwAy8A,92
+bdext-0.1.69.dist-info/entry_points.txt,sha256=lcAwyk-Fc0G_w4Ex7KDivh7h1tzSA99PRMcy971b-nM,208
+bdext-0.1.69.dist-info/top_level.txt,sha256=z4dadFfcLghr4lwROy7QR3zEICpa-eCPT6mmcoHeEJY,12
+bdext-0.1.69.dist-info/RECORD,,