batoolset 0.1.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (162) hide show
  1. batoolset/GUI/__init__.py +0 -0
  2. batoolset/GUI/list_gui.py +513 -0
  3. batoolset/GUI/multi_image_display.py +989 -0
  4. batoolset/GUI/open.py +325 -0
  5. batoolset/GUI/overlay_hints.py +45 -0
  6. batoolset/GUI/paint2.py +1345 -0
  7. batoolset/GUI/scrollablepaint.py +1152 -0
  8. batoolset/IJ_ROIs/__init__.py +0 -0
  9. batoolset/IJ_ROIs/tools.py +40 -0
  10. batoolset/PATH/__init__.py +0 -0
  11. batoolset/PATH/tools.py +79 -0
  12. batoolset/SQLite_tools/__init__.py +0 -0
  13. batoolset/SQLite_tools/tools.py +840 -0
  14. batoolset/__init__.py +0 -0
  15. batoolset/binary/__init__.py +0 -0
  16. batoolset/binary/tools.py +123 -0
  17. batoolset/binarytools/__init__.py +0 -0
  18. batoolset/binarytools/cell_center_detector.py +290 -0
  19. batoolset/clipboard_tools/__init__.py +0 -0
  20. batoolset/clipboard_tools/tools.py +7 -0
  21. batoolset/colors/__init__.py +0 -0
  22. batoolset/colors/colorgen.py +193 -0
  23. batoolset/colors/tools.py +22 -0
  24. batoolset/command_line/__init__.py +0 -0
  25. batoolset/command_line/tools.py +18 -0
  26. batoolset/dialogs/__init__.py +0 -0
  27. batoolset/dialogs/opensave.py +228 -0
  28. batoolset/dicts/__init__.py +0 -0
  29. batoolset/dicts/tools.py +299 -0
  30. batoolset/dims/__init__.py +0 -0
  31. batoolset/dims/tools.py +83 -0
  32. batoolset/draw/__init__.py +0 -0
  33. batoolset/draw/shapes/Position.py +183 -0
  34. batoolset/draw/shapes/__init__.py +0 -0
  35. batoolset/draw/shapes/automated_alignment_drawing_refactored.py +346 -0
  36. batoolset/draw/shapes/circle2d.py +99 -0
  37. batoolset/draw/shapes/compute_optimal_size_all_merged.py +317 -0
  38. batoolset/draw/shapes/ellipse2d.py +336 -0
  39. batoolset/draw/shapes/freehand2d.py +235 -0
  40. batoolset/draw/shapes/group.py +1830 -0
  41. batoolset/draw/shapes/image2d.py +2469 -0
  42. batoolset/draw/shapes/line2d.py +575 -0
  43. batoolset/draw/shapes/point2d.py +257 -0
  44. batoolset/draw/shapes/polygon2d.py +357 -0
  45. batoolset/draw/shapes/polyline2d.py +235 -0
  46. batoolset/draw/shapes/rect2d.py +388 -0
  47. batoolset/draw/shapes/rectangle2d.py +601 -0
  48. batoolset/draw/shapes/scalebar.py +304 -0
  49. batoolset/draw/shapes/serializablefont.py +126 -0
  50. batoolset/draw/shapes/serializableguiparams.py +10 -0
  51. batoolset/draw/shapes/square2d.py +103 -0
  52. batoolset/draw/shapes/textorientation.py +45 -0
  53. batoolset/draw/shapes/tools.py +467 -0
  54. batoolset/draw/shapes/transform2D.py +350 -0
  55. batoolset/draw/shapes/txt2d.py +550 -0
  56. batoolset/draw/widgets/__init__.py +0 -0
  57. batoolset/draw/widgets/col.py +343 -0
  58. batoolset/draw/widgets/image_group.py +248 -0
  59. batoolset/draw/widgets/image_organizer.py +96 -0
  60. batoolset/draw/widgets/paint.py +184 -0
  61. batoolset/draw/widgets/vectorial.py +257 -0
  62. batoolset/figure/__init__.py +0 -0
  63. batoolset/figure/alignment.py +814 -0
  64. batoolset/figure/column.py +1117 -0
  65. batoolset/figure/fig_tools.py +285 -0
  66. batoolset/figure/minimal_debugger_scale_etc.py +139 -0
  67. batoolset/figure/panel.py +697 -0
  68. batoolset/figure/row.py +852 -0
  69. batoolset/figure/user_selection.py +287 -0
  70. batoolset/files/__init__.py +0 -0
  71. batoolset/files/tools.py +1321 -0
  72. batoolset/images/__init__.py +0 -0
  73. batoolset/images/tools.py +81 -0
  74. batoolset/img.py +5216 -0
  75. batoolset/linux/__init__.py +0 -0
  76. batoolset/linux/tools.py +72 -0
  77. batoolset/lists/__init__.py +0 -0
  78. batoolset/lists/tools.py +436 -0
  79. batoolset/luts/__init__.py +0 -0
  80. batoolset/luts/lut_minimal_test.py +1207 -0
  81. batoolset/matplolib/__init__.py +0 -0
  82. batoolset/matplolib/tools.py +44 -0
  83. batoolset/np_tools/__init__.py +0 -0
  84. batoolset/np_tools/tools.py +252 -0
  85. batoolset/np_tools/trash.py +15 -0
  86. batoolset/pandas_tools/__init__.py +0 -0
  87. batoolset/pandas_tools/tools.py +880 -0
  88. batoolset/partials/__init__.py +0 -0
  89. batoolset/partials/tools.py +83 -0
  90. batoolset/plot_tools/__init__.py +0 -0
  91. batoolset/plot_tools/tools.py +70 -0
  92. batoolset/pyqt/__init__.py +0 -0
  93. batoolset/pyqt/tools.py +691 -0
  94. batoolset/re_tools/__init__.py +0 -0
  95. batoolset/re_tools/tools.py +35 -0
  96. batoolset/serialization/__init__.py +0 -0
  97. batoolset/serialization/tools.py +1192 -0
  98. batoolset/sets/__init__.py +0 -0
  99. batoolset/sets/tools.py +109 -0
  100. batoolset/settings/__init__.py +0 -0
  101. batoolset/settings/global_settings.py +134 -0
  102. batoolset/strings/__init__.py +0 -0
  103. batoolset/strings/tools.py +225 -0
  104. batoolset/ta/__init__.py +0 -0
  105. batoolset/ta/database/__init__.py +0 -0
  106. batoolset/ta/database/advanced_sql_plotter.py +1170 -0
  107. batoolset/ta/database/my_qt_table.py +79 -0
  108. batoolset/ta/database/preview_and_edit_sqlite_db.py +405 -0
  109. batoolset/ta/database/sql.py +2141 -0
  110. batoolset/ta/database/sql_column_name_dialog.py +122 -0
  111. batoolset/ta/measurements/TAmeasures.py +2226 -0
  112. batoolset/ta/measurements/__init__.py +0 -0
  113. batoolset/ta/measurements/measurements3D/__init__.py +0 -0
  114. batoolset/ta/measurements/measurements3D/get_point_on_surface_if_centroid_is_bad.py +175 -0
  115. batoolset/ta/measurements/measurements3D/height_map_to_projection.py +82 -0
  116. batoolset/ta/measurements/measurements3D/measures3D.py +208 -0
  117. batoolset/ta/measurements/measurements3D/triangulate.py +331 -0
  118. batoolset/ta/measurements/nematic.py +562 -0
  119. batoolset/ta/measurements/nematic_measurements.py +107 -0
  120. batoolset/ta/segmentation/__init__.py +0 -0
  121. batoolset/ta/segmentation/neo_wshed.py +314 -0
  122. batoolset/ta/selections/__init__.py +0 -0
  123. batoolset/ta/selections/selection.py +329 -0
  124. batoolset/ta/tracking/__init__.py +0 -0
  125. batoolset/ta/tracking/last_tracking_based_on_matching_or_on_translation_from_mermaid_warp.py +653 -0
  126. batoolset/ta/tracking/local_to_track_correspondance.py +138 -0
  127. batoolset/ta/tracking/rapid_detection_of_vertices.py +517 -0
  128. batoolset/ta/tracking/registration.py +108 -0
  129. batoolset/ta/tracking/swap_detector_and_fixer.py +296 -0
  130. batoolset/ta/tracking/track_correction.py +238 -0
  131. batoolset/ta/tracking/tracking_error_detector_and_fixer.py +3099 -0
  132. batoolset/ta/tracking/tracking_yet_another_approach_pyramidal_registration_n_neo_swapping_correction.py +725 -0
  133. batoolset/ta/utils/TA_tools.py +43 -0
  134. batoolset/ta/utils/__init__.py +0 -0
  135. batoolset/ta/utils/rps_tools.py +1783 -0
  136. batoolset/tests/__init__.py +0 -0
  137. batoolset/tests/rps_tools.py +51 -0
  138. batoolset/tests/tools.py +10 -0
  139. batoolset/tools/__init__.py +0 -0
  140. batoolset/tools/early_stopper_class.py +9 -0
  141. batoolset/tools/guided_data_recoverer.py +110 -0
  142. batoolset/tools/logger.py +100 -0
  143. batoolset/tools/mytimer.py +31 -0
  144. batoolset/tools/prompt_color.py +160 -0
  145. batoolset/tools/qthandler.py +118 -0
  146. batoolset/uitools/__init__.py +0 -0
  147. batoolset/uitools/blinker.py +56 -0
  148. batoolset/unsafe/__init__.py +0 -0
  149. batoolset/unsafe/tools.py +115 -0
  150. batoolset/utils/__init__.py +0 -0
  151. batoolset/utils/commontools.py +158 -0
  152. batoolset/utils/loadlist.py +728 -0
  153. batoolset/version.py +10 -0
  154. batoolset/xml/__init__.py +0 -0
  155. batoolset/xml/tools.py +65 -0
  156. batoolset/zip_tools/__init__.py +0 -0
  157. batoolset/zip_tools/tools.py +76 -0
  158. batoolset-0.1.0.dist-info/LICENSE +24 -0
  159. batoolset-0.1.0.dist-info/METADATA +45 -0
  160. batoolset-0.1.0.dist-info/RECORD +162 -0
  161. batoolset-0.1.0.dist-info/WHEEL +5 -0
  162. batoolset-0.1.0.dist-info/top_level.txt +1 -0
File without changes
@@ -0,0 +1,83 @@
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+ from functools import partial
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+
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+
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+ def dummy():
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+ print('test')
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+
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+ def dummy2():
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+ print('test2')
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+
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+ def get_method_name(partial_func):
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+ """
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+ Returns the name of the wrapped function in a partial object.
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+
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+ Args:
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+ partial_func (functools.partial): The partial object.
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+
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+ Returns:
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+ str: The name of the wrapped function.
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+
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+ Examples:
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+ >>> tst = partial(dummy)
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+ >>> print(get_method_name(tst))
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+ 'dummy'
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+ """
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+ return partial_func.func.__name__
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+
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+ def is_partial(func):
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+ """
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+ Checks if an object is a partial object.
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+
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+ Args:
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+ func: The object to check.
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+
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+ Returns:
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+ bool: True if the object is a partial object, False otherwise.
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+
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+ Examples:
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+ >>> tst = partial(dummy)
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+ >>> print(is_partial(tst))
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+ True
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+ """
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+ return isinstance(func, partial)
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+
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+ def are_function_names_matching(func1, func2):
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+ """
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+ Compares the names of two function objects or partial objects and returns True if they match, False otherwise.
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+
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+ Args:
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+ func1: The first function object or partial object.
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+ func2: The second function object or partial object.
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+
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+ Returns:
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+ bool: True if the names match, False otherwise.
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+
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+ Examples:
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+ >>> print(are_function_names_matching(dummy, dummy2))
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+ False
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+ >>> print(are_function_names_matching(dummy, dummy))
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+ True
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+ >>> tst = partial(dummy)
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+ >>> print(are_function_names_matching(tst, dummy))
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+ True
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+ """
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+ if is_partial(func1):
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+ func1 = get_method_name(func1)
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+ else:
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+ func1 = func1.__name__
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+ if is_partial(func2):
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+ func2 = get_method_name(func2)
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+ else:
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+ func2 = func2.__name__
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+ return func1 == func2
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+
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+ if __name__ == '__main__':
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+
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+ tst = partial(dummy)
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+
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+
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+ print('is partial:', is_partial(tst))
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+ print('get method name:', get_method_name(tst))
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+ print('are function names matching:', are_function_names_matching(dummy, dummy2))
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+ print('are function names matching:', are_function_names_matching(dummy, dummy))
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+ print('are function names matching:', are_function_names_matching(tst, dummy))
File without changes
@@ -0,0 +1,70 @@
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+ import random
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+ import matplotlib.pyplot as plt
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+ import numpy as np
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+
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+ def plot_image_with_pixels(image, cmap='gray'):
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+ '''
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+ Plots an image with white lines surrounding each pixel. NB: This only make sense for small images
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+
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+ Args:
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+ image (numpy.ndarray): The input image array.
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+ cmap (str, optional): The colormap to use for displaying the image. Defaults to 'gray'.
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+
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+ Returns:
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+ matplotlib.figure.Figure: The figure object containing the plotted image.
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+
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+ # Examples:
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+ # >>> image = np.random.rand(10, 10)
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+ # >>> fig = plot_image_with_pixels(image)
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+ # >>> plt.show()
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+ '''
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+ # Create a new figure and axes
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+ fig, ax = plt.subplots()
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+
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+ # Show the image using imshow()
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+ ax.imshow(image, cmap=cmap, interpolation=None)
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+
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+ # Set the tick locations to center the ticks at the pixels
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+ ax.set_xticks(np.arange(image.shape[1]), minor=False)
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+ ax.set_yticks(np.arange(image.shape[0]), minor=False)
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+
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+ # Shift the grid by 0.5 to surround the pixels
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+ ax.set_xticks(np.arange(image.shape[1]+1)-0.5, minor=True)
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+ ax.set_yticks(np.arange(image.shape[0]+1)-0.5, minor=True)
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+
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+ # If the image is too large, hide the tick labels
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+ if image.shape[0] > 50:
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+ ax.set_yticklabels([])
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+
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+ if image.shape[1] > 50:
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+ ax.set_xticklabels([])
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+
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+ # Add the lines around each pixel using grid()
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+ ax.grid(which='minor', color='white', linestyle='-', linewidth=1)
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+
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+ # Return the figure object
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+ return fig
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+
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+
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+ if __name__ == '__main__':
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+
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+ if True:
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+ # Generate a random image of a random type
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+ image = random.choice([np.random.rand(10, 10), np.random.rand(100, 10, 3)])
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+
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+ # Plot the image with white lines surrounding each pixel
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+ fig = plot_image_with_pixels(image)
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+
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+ # Show the plot
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+ plt.show()
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+
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+
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+ if True:
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+ from batoolset.img import pop, Img
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+ img = Img('/E/Sample_images/sample_images_FIJI/AuPbSn40.jpg')
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+ pop(img)
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+ # sys.exit(0)
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+
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+
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+
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+
File without changes