basic-memory 0.23.1.dev20__py3-none-any.whl → 0.23.1.dev27__py3-none-any.whl

basic_memory/alembic/versions/7f6a2b8c9d10_index_full_postgres_note_content.py

@@ -22,6 +22,62 @@ def upgrade() -> None:
     """Index complete note bodies as bounded PostgreSQL FTS chunks."""
     connection = op.get_bind()
     if connection.dialect.name == "postgresql":
+        # --- Repair: recreate search_index if a destructive reindex removed it ---
+        # Trigger: search_index does not exist. Through v0.23.0, the per-project
+        # search reindex ran DROP TABLE IF EXISTS search_index, and on Postgres
+        # nothing outside migrations recreates that table.
+        # Why: the chunk backfill below reads search_index and the chunks table
+        # declares a foreign key to it, so without repair this migration fails
+        # permanently and blocks the database from ever reaching head.
+        # Outcome: healthy databases no-op on IF NOT EXISTS; a repaired database
+        # gets an empty index that the next full reindex repopulates. The DDL
+        # mirrors the current schema in models/search.py.
+        op.execute("""
+            CREATE TABLE IF NOT EXISTS search_index (
+                id INTEGER NOT NULL,
+                project_id INTEGER NOT NULL,
+                title TEXT,
+                content_stems TEXT,
+                content_snippet TEXT,
+                permalink VARCHAR,
+                file_path VARCHAR,
+                type VARCHAR,
+                from_id INTEGER,
+                to_id INTEGER,
+                relation_type VARCHAR,
+                entity_id INTEGER,
+                category VARCHAR,
+                metadata JSONB,
+                created_at TIMESTAMP WITH TIME ZONE,
+                updated_at TIMESTAMP WITH TIME ZONE,
+                textsearchable_index_col tsvector GENERATED ALWAYS AS (
+                    to_tsvector(
+                        'english',
+                        coalesce(title, '') || ' ' ||
+                        coalesce(content_stems, '')
+                    )
+                ) STORED,
+                PRIMARY KEY (id, type, project_id),
+                FOREIGN KEY (project_id) REFERENCES project(id) ON DELETE CASCADE
+            )
+        """)
+        op.execute("""
+            CREATE INDEX IF NOT EXISTS ix_search_index_project_id
+            ON search_index (project_id)
+        """)
+        op.execute("""
+            CREATE INDEX IF NOT EXISTS idx_search_index_fts
+            ON search_index USING gin(textsearchable_index_col)
+        """)
+        op.execute("""
+            CREATE INDEX IF NOT EXISTS idx_search_index_metadata_gin
+            ON search_index USING gin(metadata jsonb_path_ops)
+        """)
+        op.execute("""
+            CREATE UNIQUE INDEX IF NOT EXISTS uix_search_index_permalink_project
+            ON search_index (permalink, project_id)
+            WHERE permalink IS NOT NULL
+        """)
         op.execute("""
             CREATE TABLE search_index_fts_chunks (
                 project_id INTEGER NOT NULL,

basic_memory/api/v2/routers/project_router.py

@@ -221,6 +221,28 @@ async def add_project(
         raise HTTPException(status_code=400, detail=str(e))
 
 
+@router.post("/doctor", response_model=ProjectStatusResponse, status_code=201)
+async def add_doctor_project(project_service: ProjectServiceDep) -> ProjectStatusResponse:
+    """Create a server-generated disposable project for the local doctor check."""
+    try:
+        new_project = await project_service.add_doctor_project()
+    except ValueError as e:
+        raise HTTPException(status_code=400, detail=str(e))
+
+    return ProjectStatusResponse(
+        message=f"Project '{new_project.name}' added successfully",
+        status="success",
+        default=new_project.is_default or False,
+        new_project=ProjectItem(
+            id=new_project.id,
+            external_id=new_project.external_id,
+            name=new_project.name,
+            path=new_project.path,
+            is_default=new_project.is_default or False,
+        ),
+    )
+
+
 @router.post("/config/sync", response_model=ProjectStatusResponse)
 async def synchronize_projects(
     project_service: ProjectServiceDep,

basic_memory/cli/commands/doctor.py

@@ -5,6 +5,7 @@ from __future__ import annotations
 import tempfile
 import uuid
 from pathlib import Path
+from typing import Protocol
 
 from loguru import logger
 from rich.console import Console
@@ -23,6 +24,14 @@ from basic_memory.schemas import ProjectIndexRunResponse
 console = Console()
 
 
+class DoctorProjectClient(Protocol):
+    """Project-client capability required to clean up doctor state."""
+
+    async def delete_project(
+        self, project_external_id: str, delete_notes: bool = False
+    ) -> object: ...
+
+
 def _is_default_project_delete_error(error: Exception) -> bool:
     """Return True only for the API guard that blocks deleting the default project."""
     error_text = str(error)
@@ -61,14 +70,14 @@ async def _delete_doctor_project_locally(project_name: str, project_id: str) ->
 
 
 async def _delete_doctor_project(
-    project_client: ProjectClient, project_name: str, project_id: str
+    project_client: DoctorProjectClient, project_name: str, project_id: str
 ) -> None:
     """Delete the generated doctor project without weakening the public API guard."""
     # Deferred: ToolError lives in FastMCP's runtime, which must not load at CLI startup (#886).
     from fastmcp.exceptions import ToolError
 
     try:
-        await project_client.delete_project(project_id)
+        await project_client.delete_project(project_id, delete_notes=True)
     except ToolError as exc:
         if not _is_default_project_delete_error(exc):
             raise
@@ -127,9 +136,16 @@ async def run_doctor() -> None:
             project_id: str | None = None
 
             try:
-                status = await project_client.create_project(project_request.model_dump())
+                from basic_memory.config import ConfigManager
+
+                status = (
+                    await project_client.create_doctor_project()
+                    if ConfigManager().config.project_root
+                    else await project_client.create_project(project_request.model_dump())
+                )
                 if not status.new_project:
                     raise ValueError("Failed to create doctor project")
+                project_name = status.new_project.name
                 project_id = status.new_project.external_id
                 # Use the resolved path from the server — when project_root is configured,
                 # the actual project directory differs from the requested temp_path

basic_memory/mcp/clients/project.py

@@ -78,6 +78,13 @@ class ProjectClient:
         )
         return ProjectStatusResponse.model_validate(response.json())
 
+    async def create_doctor_project(self) -> ProjectStatusResponse:
+        """Create the server-generated disposable project used by doctor."""
+        from basic_memory.mcp.tools.utils import call_post
+
+        response = await call_post(self.http_client, "/v2/projects/doctor")
+        return ProjectStatusResponse.model_validate(response.json())
+
     async def delete_project(
         self, project_external_id: str, delete_notes: bool = False
     ) -> ProjectStatusResponse:

basic_memory/repository/search_repository.py

@@ -129,6 +129,10 @@ class SearchRepository(Protocol):
         """Delete item by permalink."""
         ...
 
+    async def delete_project_search_rows(self) -> None:
+        """Delete every full-text search row owned by this project."""
+        ...
+
     async def delete_by_entity_id(self, entity_id: int) -> None:
         """Delete items by entity ID."""
         ...

basic_memory/repository/search_repository_base.py

@@ -1143,6 +1143,21 @@ class SearchRepositoryBase(ABC):
             )
             await session.commit()
 
+    async def delete_project_search_rows(self) -> None:
+        """Delete every full-text search row owned by this repository's project.
+
+        Shared across backends: both store rows in `search_index` keyed by
+        project_id, and a project-scoped DELETE leaves sibling projects in the
+        same database untouched. On Postgres the bounded FTS chunk rows follow
+        via their ON DELETE CASCADE foreign key.
+        """
+        async with db.scoped_session(self.session_maker) as session:
+            await session.execute(
+                text("DELETE FROM search_index WHERE project_id = :project_id"),
+                {"project_id": self.project_id},
+            )
+            await session.commit()
+
     async def execute_query(
         self,
         query: Executable,

basic_memory/services/project_service.py

@@ -4,6 +4,7 @@ import asyncio
 import json
 import os
 import shutil
+import uuid
 from collections.abc import Callable
 from datetime import datetime
 from pathlib import Path
@@ -190,7 +191,9 @@ class ProjectService:
                 # Not nested in either direction
                 return False
 
-    async def add_project(self, name: str, path: str, set_default: bool = False) -> None:
+    async def add_project(
+        self, name: str, path: str, set_default: bool = False, *, allow_nested: bool = False
+    ) -> None:
         """Add a new project to the configuration and database.
 
         Args:
@@ -240,27 +243,25 @@ class ProjectService:
                             f"In cloud mode, paths are normalized to lowercase to prevent case-sensitivity issues."
                         )  # pragma: no cover
 
-            # Check for nested paths with existing projects
-            for existing in existing_projects:
-                if self._check_nested_paths(resolved_path, existing.path):
-                    # Determine which path is nested within which for appropriate error message
-                    p_new = Path(resolved_path).resolve()
-                    p_existing = Path(existing.path).resolve()
-
-                    # Check if new path is nested under existing project
-                    if p_new.is_relative_to(p_existing):
-                        raise ValueError(
-                            f"Cannot create project at '{resolved_path}': "
-                            f"path is nested within existing project '{existing.name}' at '{existing.path}'. "
-                            f"Projects cannot share directory trees."
-                        )
-                    else:
-                        # Existing project is nested under new path
-                        raise ValueError(
-                            f"Cannot create project at '{resolved_path}': "
-                            f"existing project '{existing.name}' at '{existing.path}' is nested within this path. "
-                            f"Projects cannot share directory trees."
-                        )
+            # Doctor creates a disposable project inside the configured project root.
+            # It must be allowed to coexist with the existing root project.
+            if not allow_nested:
+                for existing in existing_projects:
+                    if self._check_nested_paths(resolved_path, existing.path):
+                        p_new = Path(resolved_path).resolve()
+                        p_existing = Path(existing.path).resolve()
+                        if p_new.is_relative_to(p_existing):
+                            raise ValueError(
+                                f"Cannot create project at '{resolved_path}': "
+                                f"path is nested within existing project '{existing.name}' at '{existing.path}'. "
+                                f"Projects cannot share directory trees."
+                            )
+                        else:
+                            raise ValueError(
+                                f"Cannot create project at '{resolved_path}': "
+                                f"existing project '{existing.name}' at '{existing.path}' is nested within this path. "
+                                f"Projects cannot share directory trees."
+                            )
 
             # Ensure the project directory exists on disk.
             # Trigger: project_root not set means local filesystem mode (not S3/cloud)
@@ -332,6 +333,19 @@ class ProjectService:
 
         logger.info(f"Project '{name}' added at {resolved_path}")
 
+    async def add_doctor_project(self) -> Project:
+        """Create a server-generated disposable project under the configured root."""
+        project_root = self.config_manager.config.project_root
+        if not project_root:
+            raise ValueError("Doctor projects require BASIC_MEMORY_PROJECT_ROOT")
+
+        project_name = f"doctor-{uuid.uuid4().hex[:8]}"
+        await self.add_project(project_name, project_root, allow_nested=True)
+        project = await self.get_project(project_name)
+        if project is None:  # pragma: no cover
+            raise ValueError("Failed to retrieve doctor project")
+        return project
+
     async def remove_project(self, name: str, delete_notes: bool = False) -> None:
         """Remove a project from configuration and database.
 

basic_memory/services/search_service.py

@@ -11,7 +11,6 @@ from typing import Any, List, Optional, Set, Dict
 from dateparser import parse
 from fastapi import BackgroundTasks
 from loguru import logger
-from sqlalchemy import text
 from sqlalchemy.ext.asyncio import AsyncSession, async_sessionmaker
 
 import logfire
@@ -152,11 +151,20 @@ class SearchService:
         logger.info("Starting full reindex")
         # Trigger: a full search rebuild removes every derived row.
         # Why: vector storage may live outside SQL, so cleanup must cross the
-        # repository boundary before the full-text table is recreated.
+        # repository boundary before the full-text rows are rebuilt.
         # Outcome: built-in and extension indexes follow the same lifecycle.
         await self.repository.delete_project_vector_rows()
-        await self.repository.execute_query(text("DROP TABLE IF EXISTS search_index"), params={})
+        # Trigger: this service reindexes exactly one project, but search_index
+        # is shared by every project in the database (local SQLite consolidated
+        # into one memory.db; cloud tenants share one Postgres DB across
+        # projects). The historical DROP TABLE here dated from the one-database-
+        # per-project era and destroyed sibling projects' rows — on Postgres it
+        # also left nothing behind, since only migrations recreate the table.
+        # Why: a project-scoped DELETE clears only rows this rebuild will
+        # repopulate, and on Postgres the FTS chunk rows cascade with them.
+        # Outcome: sibling projects keep serving search while this one rebuilds.
         await self.init_search_index()
+        await self.repository.delete_project_search_rows()
 
         # Reindex all entities
         logger.debug("Indexing entities")

{basic_memory-0.23.1.dev20.dist-info → basic_memory-0.23.1.dev27.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.5
 Name: basic-memory
-Version: 0.23.1.dev20
+Version: 0.23.1.dev27
 Summary: Local-first knowledge management combining Zettelkasten with knowledge graphs
 Project-URL: Homepage, https://github.com/basicmachines-co/basic-memory
 Project-URL: Repository, https://github.com/basicmachines-co/basic-memory

{basic_memory-0.23.1.dev20.dist-info → basic_memory-0.23.1.dev27.dist-info}/RECORD

@@ -23,7 +23,7 @@ basic_memory/alembic/versions/502b60eaa905_remove_required_from_entity_permalink
 basic_memory/alembic/versions/5fe1ab1ccebe_add_projects_table.py,sha256=xTSVvB-caYl_CdVfzhj-eqdQEOxQ12NIHOc8dBSqCMQ,4779
 basic_memory/alembic/versions/647e7a75e2cd_project_constraint_fix.py,sha256=oFtjzJd37HUMezuCUonK-yRc867_9L5zxd4CnLhFIi4,4655
 basic_memory/alembic/versions/6830751f5fb6_merge_multiple_heads.py,sha256=8bO4yg_v6klCJz0E15sDI2pDtsmAL2nNO5ACpKGLYQo,499
-basic_memory/alembic/versions/7f6a2b8c9d10_index_full_postgres_note_content.py,sha256=Kf4-_uBKe28MbpbKPsxZEKQzCYpIxv79iWxbKUZI91w,2857
+basic_memory/alembic/versions/7f6a2b8c9d10_index_full_postgres_note_content.py,sha256=0Ipk-T-7LiA8-ExBr-mz-zqKHvH9QI0G33zdWtnREHo,5414
 basic_memory/alembic/versions/9d9c1cb7d8f5_add_mtime_and_size_columns_to_entity_.py,sha256=DYlXlRYO3Ms6x9GbrFGWgj1QEzsdKHx-4AA4lSVM7y0,1587
 basic_memory/alembic/versions/a1b2c3d4e5f6_fix_project_foreign_keys.py,sha256=i42eQyO08RWf4exnH1q1PKw_EJFsHAG-T4pdLTMSpiA,1818
 basic_memory/alembic/versions/a2b3c4d5e6f7_add_search_index_entity_cascade.py,sha256=Oh_J5Jw85J3LvknfizFP7_1SoelZM_A7IjBau8lRpfk,1671
@@ -56,7 +56,7 @@ basic_memory/api/v2/routers/importer_router.py,sha256=LHdi0q7FKKTeynMl4qg4itOw51
 basic_memory/api/v2/routers/inspect_router.py,sha256=4QDM89AzWShF1UTE6CDjX1R8_4aNs3DIm4SpUUsbWzA,8637
 basic_memory/api/v2/routers/knowledge_router.py,sha256=-irLLXtYTUtlbqjHUwN6OhWn1jG8SN9mbeUp3uOUpwk,49572
 basic_memory/api/v2/routers/memory_router.py,sha256=2BvV7zA_39Ld3ySjY5twy7AzaMncn70fUVN7IdhGX_o,7308
-basic_memory/api/v2/routers/project_router.py,sha256=8pHBw3UmVx0CPWr1eCJWHquK0oV3LzTOGTYBtohzFi4,24886
+basic_memory/api/v2/routers/project_router.py,sha256=LGXW0ijvz68jZw0I5AWpXKfAOUgu2egDQymMFGJql88,25737
 basic_memory/api/v2/routers/prompt_router.py,sha256=QE69XMKE6MB-yhzvr1mONkkeBZwKA_Ui9Kt-5ZVKvdY,10449
 basic_memory/api/v2/routers/resource_router.py,sha256=t_tXxqGgxYJqcPFKU9jbFBhJzSIjTnfzo6SQMGFV2Mo,7571
 basic_memory/api/v2/routers/schema_router.py,sha256=B_T2OXXFKvC-VaBzzDa2IbBmIHnJr_fPN43_8n9rMYo,22254
@@ -77,7 +77,7 @@ basic_memory/cli/commands/ci.py,sha256=MW4pepm9472iMzbryA4p-r-SG-OPnFftshB-0S8LB
 basic_memory/cli/commands/command_utils.py,sha256=9_xUeeg1-nsnUw3MdNXOc_rhVROqhXqEDcTD3E_ga3A,5008
 basic_memory/cli/commands/config.py,sha256=8IBqPrcgklhvHkVFG8v9laO0PqZkvfLsZ_jgbPkFCb4,8700
 basic_memory/cli/commands/db.py,sha256=aQcjHpff15pfpDTKKpV-zz38TIJNfkOFQsCWggqbbU8,22596
-basic_memory/cli/commands/doctor.py,sha256=84AifKWTxcCibUOkZvJQ8P7PKuPK_P36KLy5d6aNvsQ,10755
+basic_memory/cli/commands/doctor.py,sha256=51fp0Keazaid-KPaIKaR9xKU9ELSALxFurvXKNuVnVo,11324
 basic_memory/cli/commands/format.py,sha256=pgXkk0ptU2quN0XzjURuapA5AqrIBu1y4j6J1t52ovI,6753
 basic_memory/cli/commands/hook.py,sha256=tNtGzf4E40bhZQL6-SJwQpq8ehQmxm7EIae7O7-3jJg,60641
 basic_memory/cli/commands/import_chatgpt.py,sha256=7SUGG_mmme0BuL4ov0lhb98VkTUldunCv-ehQirtwZE,3870
@@ -224,7 +224,7 @@ basic_memory/mcp/clients/directory.py,sha256=C_fY7xo300ceF-heRBAktv7OffEnNAuPWx1
 basic_memory/mcp/clients/inspect.py,sha256=TtiEOiJITDuFLtrdwMcoY-XBNuCK4C3NobzpQHdHoRU,2311
 basic_memory/mcp/clients/knowledge.py,sha256=DtEsAkqCtZFc-v93KIuPyOFCRLFbbOQGPqEwOSMJytw,13757
 basic_memory/mcp/clients/memory.py,sha256=qKSjKS7jJOKu7y-Lldsm561KU0G9OpRzA0tLf7l9FmI,4794
-basic_memory/mcp/clients/project.py,sha256=rYYtw58rSwuie_JIwWZ6Wdx2Y6JCQ70NNb79UNcf6hw,7604
+basic_memory/mcp/clients/project.py,sha256=0er3M6QMjepuKpbn4G6oz7IuVf4veQhDTHJL6iUE09c,7955
 basic_memory/mcp/clients/resource.py,sha256=_FI7bOBAQwlEuv24wU1tsGIFR-riHcemgZSMJqOLBN4,2218
 basic_memory/mcp/clients/schema.py,sha256=OnLDJnh-8OkELdMVDRBObjOsGfgaDzroryjzSP8aWyc,3618
 basic_memory/mcp/clients/search.py,sha256=I7mJxVaQ8-igJzuMzxYaZgHGCwJAkjMHf2QIgYuZBjI,3030
@@ -317,8 +317,8 @@ basic_memory/repository/rerank_provider.py,sha256=JnMXexhMOv93gJ3UQkkUE6tQyJWdph
 basic_memory/repository/rerank_provider_factory.py,sha256=JlPHD0YdAWSima7gGkheiTnGhEn2j5JPB09MZDuhoj0,4735
 basic_memory/repository/search_index_row.py,sha256=bTF7-tiz91HySchZfdP1dZbUNW7WU2KNgG1s1mnRBWc,5335
 basic_memory/repository/search_query.py,sha256=0Kh1IDMXCUza-uTKej5wCu-TjHKhA8j-MCzQ0-abvpA,13949
-basic_memory/repository/search_repository.py,sha256=U6okrNaxDqEHYIwLNYyZPPtDimiiqmZO1U6CPrXgrHQ,9555
-basic_memory/repository/search_repository_base.py,sha256=GUEI39CYuAai87m6woEhCyYKrMZ9THuTdEqhoLB02DU,119986
+basic_memory/repository/search_repository.py,sha256=Cpgn1feacMtxbm7BhaWf_FMS__Gn7WiIAnovYJX7-Ao,9695
+basic_memory/repository/search_repository_base.py,sha256=7olsUTL0nI-4vkspTViJZbvqIfDPxGho34D3vmILpdo,120702
 basic_memory/repository/search_trace.py,sha256=OLcUJ-4GBva1zgNPBlNA1BThpUJo77YsW5H-0j3zqy4,20613
 basic_memory/repository/semantic_chunking.py,sha256=7xTmL7vt_6vBSYJYeio6s7nTkvW8AdQ9sok1HIY5GWE,8427
 basic_memory/repository/semantic_errors.py,sha256=1v0jz9aBkephpVc4FcX3xIQvgk5jnkO9VpZhPM7AdIc,996
@@ -385,14 +385,14 @@ basic_memory/services/note_content_reads.py,sha256=3o6GI2VJFkA5PScQD4IlZDO_4rcXL
 basic_memory/services/note_content_writes.py,sha256=wqnPnaUII2k_xlTBYMZAVlrc7zGX13M3el334F6z6hY,20530
 basic_memory/services/note_preparation.py,sha256=POGmk0L_9a-eLIMmXmuKtN81QRabF0JyipZiIz0eNqY,38262
 basic_memory/services/project_deletes.py,sha256=bnq8la1ZKsZEkcAg3Ew2onXHku9CWChr-BWDZA6lvuI,6010
-basic_memory/services/project_service.py,sha256=JB-pNRZfRhVGIRUlSt7IiI-BllxgFs8A7xtGK3klFcA,61803
+basic_memory/services/project_service.py,sha256=E6rpEwKz6ihynZjXxBlvxUbG69YqE8jxOgBI3zT1XWQ,62460
 basic_memory/services/retrieval_inspect.py,sha256=gJq94oYV6ISeh-JeUAB8srMw8K3oGeMgzVXEOWAEzxA,23844
-basic_memory/services/search_service.py,sha256=OcT2wMn7rN1GQ_0l8OH8KKcoTG4D7-EvfqPulss01NA,39618
+basic_memory/services/search_service.py,sha256=8A1vXo5IIpKXL2gxEsCEP_tcKyRcnz4R5xb6zijRuW0,40254
 basic_memory/services/service.py,sha256=V-d_8gOV07zGIQDpL-Ksqs3ZN9l3qf3HZOK1f_YNTag,336
 basic_memory/templates/prompts/continue_conversation.hbs,sha256=trrDHSXA5S0JCbInMoUJL04xvCGRB_ku1RHNQHtl6ZI,3076
 basic_memory/templates/prompts/search.hbs,sha256=H1cCIsHKp4VC1GrH2KeUB8pGe5vXFPqb2VPotypmeCA,3098
-basic_memory-0.23.1.dev20.dist-info/METADATA,sha256=kS21fqv6k0zvFoXQ3KaKUgv6UWpoDs_APp8C7FjTpqs,26848
-basic_memory-0.23.1.dev20.dist-info/WHEEL,sha256=zOwg4jB6zX2kU910N-cMawjivD6tO8NEWvE12je1bVk,87
-basic_memory-0.23.1.dev20.dist-info/entry_points.txt,sha256=wvE2mRF6-Pg4weIYcfQ-86NOLZD4WJg7F7TIsRVFLb8,90
-basic_memory-0.23.1.dev20.dist-info/licenses/LICENSE,sha256=hIahDEOTzuHCU5J2nd07LWwkLW7Hko4UFO__ffsvB-8,34523
-basic_memory-0.23.1.dev20.dist-info/RECORD,,
+basic_memory-0.23.1.dev27.dist-info/METADATA,sha256=j0HNhCqLZhDGmlKdwxHIf7eWLNDXeKyhOgF8UEzKrPI,26848
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