basic-memory 0.2.21__py3-none-any.whl → 0.3.0__py3-none-any.whl

basic_memory/__init__.py

@@ -1,3 +1,3 @@
 """basic-memory - Local-first knowledge management combining Zettelkasten with knowledge graphs"""
 
-__version__ = "0.0.1"
+__version__ = "0.3.0"

basic_memory/api/app.py

@@ -6,38 +6,17 @@ from fastapi import FastAPI, HTTPException
 from fastapi.exception_handlers import http_exception_handler
 from loguru import logger
 
+import basic_memory
 from basic_memory import db
 from basic_memory.config import config as app_config
 from basic_memory.api.routers import knowledge, search, memory, resource
-from alembic import command
-from alembic.config import Config
-
-from basic_memory.db import DatabaseType
-from basic_memory.repository.search_repository import SearchRepository
-
-
-async def run_migrations():  # pragma: no cover
-    """Run any pending alembic migrations."""
-    logger.info("Running database migrations...")
-    try:
-        config = Config("alembic.ini")
-        command.upgrade(config, "head")
-        logger.info("Migrations completed successfully")
-
-        _, session_maker = await db.get_or_create_db(
-            app_config.database_path, DatabaseType.FILESYSTEM
-        )
-        await SearchRepository(session_maker).init_search_index()
-    except Exception as e:
-        logger.error(f"Error running migrations: {e}")
-        raise
 
 
 @asynccontextmanager
 async def lifespan(app: FastAPI):  # pragma: no cover
     """Lifecycle manager for the FastAPI app."""
-    logger.info("Starting Basic Memory API")
-    await run_migrations()
+    logger.info(f"Starting Basic Memory API {basic_memory.__version__}")
+    await db.run_migrations(app_config)
     yield
     logger.info("Shutting down Basic Memory API")
     await db.shutdown_db()

basic_memory/cli/app.py

@@ -1,3 +1,13 @@
+import asyncio
+
 import typer
 
+from basic_memory import db
+from basic_memory.config import config
+from basic_memory.utils import setup_logging
+
+setup_logging(log_file=".basic-memory/basic-memory-cli.log")  # pragma: no cover
+
+asyncio.run(db.run_migrations(config))
+
 app = typer.Typer()

basic_memory/cli/commands/db.py

@@ -22,4 +22,4 @@ def reset(
             from basic_memory.cli.commands.sync import sync
 
             logger.info("Rebuilding search index from filesystem...")
-            asyncio.run(sync())  # pyright: ignore
+            sync(watch=False)  # pyright: ignore

basic_memory/cli/commands/mcp.py

@@ -12,9 +12,9 @@ import basic_memory.mcp.tools  # noqa: F401  # pragma: no cover
 
 
 @app.command()
-def mcp():
+def mcp():  # pragma: no cover
     """Run the MCP server for Claude Desktop integration."""
     home_dir = config.home
-    logger.info("Starting Basic Memory MCP server")
+    logger.info(f"Starting Basic Memory MCP server {basic_memory.__version__}")
     logger.info(f"Home directory: {home_dir}")
     mcp_server.run()

basic_memory/cli/commands/status.py

@@ -25,13 +25,11 @@ async def get_file_change_scanner(
     db_type=DatabaseType.FILESYSTEM,
 ) -> FileChangeScanner:  # pragma: no cover
     """Get sync service instance."""
-    async with db.engine_session_factory(db_path=config.database_path, db_type=db_type) as (
-        engine,
-        session_maker,
-    ):
-        entity_repository = EntityRepository(session_maker)
-        file_change_scanner = FileChangeScanner(entity_repository)
-        return file_change_scanner
+    _, session_maker = await db.get_or_create_db(db_path=config.database_path, db_type=db_type)
+
+    entity_repository = EntityRepository(session_maker)
+    file_change_scanner = FileChangeScanner(entity_repository)
+    return file_change_scanner
 
 
 def add_files_to_tree(

basic_memory/cli/commands/sync.py

@@ -14,7 +14,6 @@ from rich.tree import Tree
 from basic_memory import db
 from basic_memory.cli.app import app
 from basic_memory.config import config
-from basic_memory.db import DatabaseType
 from basic_memory.markdown import EntityParser
 from basic_memory.markdown.markdown_processor import MarkdownProcessor
 from basic_memory.repository import (
@@ -39,50 +38,50 @@ class ValidationIssue:
     error: str
 
 
-async def get_sync_service(db_type=DatabaseType.FILESYSTEM):  # pragma: no cover
+async def get_sync_service():  # pragma: no cover
     """Get sync service instance with all dependencies."""
-    async with db.engine_session_factory(db_path=config.database_path, db_type=db_type) as (
-        engine,
-        session_maker,
-    ):
-        entity_parser = EntityParser(config.home)
-        markdown_processor = MarkdownProcessor(entity_parser)
-        file_service = FileService(config.home, markdown_processor)
-
-        # Initialize repositories
-        entity_repository = EntityRepository(session_maker)
-        observation_repository = ObservationRepository(session_maker)
-        relation_repository = RelationRepository(session_maker)
-        search_repository = SearchRepository(session_maker)
-
-        # Initialize services
-        search_service = SearchService(search_repository, entity_repository, file_service)
-        link_resolver = LinkResolver(entity_repository, search_service)
-
-        # Initialize scanner
-        file_change_scanner = FileChangeScanner(entity_repository)
-
-        # Initialize services
-        entity_service = EntityService(
-            entity_parser,
-            entity_repository,
-            observation_repository,
-            relation_repository,
-            file_service,
-            link_resolver,
-        )
-
-        # Create sync service
-        sync_service = SyncService(
-            scanner=file_change_scanner,
-            entity_service=entity_service,
-            entity_parser=entity_parser,
-            entity_repository=entity_repository,
-            relation_repository=relation_repository,
-            search_service=search_service,
-        )
-
-        return sync_service
+    _, session_maker = await db.get_or_create_db(
+        db_path=config.database_path, db_type=db.DatabaseType.FILESYSTEM
+    )
+
+    entity_parser = EntityParser(config.home)
+    markdown_processor = MarkdownProcessor(entity_parser)
+    file_service = FileService(config.home, markdown_processor)
+
+    # Initialize repositories
+    entity_repository = EntityRepository(session_maker)
+    observation_repository = ObservationRepository(session_maker)
+    relation_repository = RelationRepository(session_maker)
+    search_repository = SearchRepository(session_maker)
+
+    # Initialize services
+    search_service = SearchService(search_repository, entity_repository, file_service)
+    link_resolver = LinkResolver(entity_repository, search_service)
+
+    # Initialize scanner
+    file_change_scanner = FileChangeScanner(entity_repository)
+
+    # Initialize services
+    entity_service = EntityService(
+        entity_parser,
+        entity_repository,
+        observation_repository,
+        relation_repository,
+        file_service,
+        link_resolver,
+    )
+
+    # Create sync service
+    sync_service = SyncService(
+        scanner=file_change_scanner,
+        entity_service=entity_service,
+        entity_parser=entity_parser,
+        entity_repository=entity_repository,
+        relation_repository=relation_repository,
+        search_service=search_service,
+    )
+
+    return sync_service
 
 
 def group_issues_by_directory(issues: List[ValidationIssue]) -> Dict[str, List[ValidationIssue]]:
@@ -154,6 +153,7 @@ def display_detailed_sync_results(knowledge: SyncReport):
 
 async def run_sync(verbose: bool = False, watch: bool = False):
     """Run sync operation."""
+
     sync_service = await get_sync_service()
 
     # Start watching if requested

basic_memory/db.py

@@ -4,6 +4,10 @@ from enum import Enum, auto
 from pathlib import Path
 from typing import AsyncGenerator, Optional
 
+from basic_memory.config import ProjectConfig
+from alembic import command
+from alembic.config import Config
+
 from loguru import logger
 from sqlalchemy import text
 from sqlalchemy.ext.asyncio import (
@@ -14,8 +18,7 @@ from sqlalchemy.ext.asyncio import (
     async_scoped_session,
 )
 
-from basic_memory.models import Base
-from basic_memory.models.search import CREATE_SEARCH_INDEX
+from basic_memory.repository.search_repository import SearchRepository
 
 # Module level state
 _engine: Optional[AsyncEngine] = None
@@ -35,7 +38,7 @@ class DatabaseType(Enum):
             logger.info("Using in-memory SQLite database")
             return "sqlite+aiosqlite://"
 
-        return f"sqlite+aiosqlite:///{db_path}"
+        return f"sqlite+aiosqlite:///{db_path}"  # pragma: no cover
 
 
 def get_scoped_session_factory(
@@ -69,24 +72,6 @@ async def scoped_session(
         await factory.remove()
 
 
-async def init_db() -> None:
-    """Initialize database with required tables."""
-    if _session_maker is None:  # pragma: no cover
-        raise RuntimeError("Database session maker not initialized")
-
-    logger.info("Initializing database...")
-
-    async with scoped_session(_session_maker) as session:
-        await session.execute(text("PRAGMA foreign_keys=ON"))
-        conn = await session.connection()
-        await conn.run_sync(Base.metadata.create_all)
-
-        # recreate search index
-        await session.execute(CREATE_SEARCH_INDEX)
-
-        await session.commit()
-
-
 async def get_or_create_db(
     db_path: Path,
     db_type: DatabaseType = DatabaseType.FILESYSTEM,
@@ -100,9 +85,6 @@ async def get_or_create_db(
         _engine = create_async_engine(db_url, connect_args={"check_same_thread": False})
         _session_maker = async_sessionmaker(_engine, expire_on_commit=False)
 
-        # Initialize database
-        await init_db()
-
     assert _engine is not None  # for type checker
     assert _session_maker is not None  # for type checker
     return _engine, _session_maker
@@ -122,7 +104,6 @@ async def shutdown_db() -> None:  # pragma: no cover
 async def engine_session_factory(
     db_path: Path,
     db_type: DatabaseType = DatabaseType.MEMORY,
-    init: bool = True,
 ) -> AsyncGenerator[tuple[AsyncEngine, async_sessionmaker[AsyncSession]], None]:
     """Create engine and session factory.
 
@@ -139,9 +120,6 @@ async def engine_session_factory(
     try:
         _session_maker = async_sessionmaker(_engine, expire_on_commit=False)
 
-        if init:
-            await init_db()
-
         assert _engine is not None  # for type checker
         assert _session_maker is not None  # for type checker
         yield _engine, _session_maker
@@ -150,3 +128,18 @@ async def engine_session_factory(
             await _engine.dispose()
             _engine = None
             _session_maker = None
+
+
+async def run_migrations(app_config: ProjectConfig, database_type=DatabaseType.FILESYSTEM):
+    """Run any pending alembic migrations."""
+    logger.info("Running database migrations...")
+    try:
+        config = Config("alembic.ini")
+        command.upgrade(config, "head")
+        logger.info("Migrations completed successfully")
+
+        _, session_maker = await get_or_create_db(app_config.database_path, database_type)
+        await SearchRepository(session_maker).init_search_index()
+    except Exception as e:  # pragma: no cover
+        logger.error(f"Error running migrations: {e}")
+        raise

basic_memory/mcp/async_client.py

@@ -2,7 +2,7 @@ from httpx import ASGITransport, AsyncClient
 
 from basic_memory.api.app import app as fastapi_app
 
-BASE_URL = "http://test"
+BASE_URL = "memory://"
 
 # Create shared async client
 client = AsyncClient(transport=ASGITransport(app=fastapi_app), base_url=BASE_URL)

basic_memory/mcp/tools/notes.py

@@ -13,6 +13,7 @@ from basic_memory.mcp.async_client import client
 from basic_memory.schemas import EntityResponse, DeleteEntitiesResponse
 from basic_memory.schemas.base import Entity
 from basic_memory.mcp.tools.utils import call_get, call_put, call_delete
+from basic_memory.schemas.memory import memory_url_path
 
 
 @mcp.tool(
@@ -96,7 +97,9 @@ async def read_note(identifier: str) -> str:
     Raises:
         ValueError: If the note cannot be found
     """
-    response = await call_get(client, f"/resource/{identifier}")
+    logger.info(f"Reading note {identifier}")
+    url = memory_url_path(identifier)
+    response = await call_get(client, f"/resource/{url}")
     return response.text
 
 

basic_memory/sync/utils.py

@@ -1,10 +1,7 @@
 """Types and utilities for file sync."""
 
 from dataclasses import dataclass, field
-from typing import Set, Dict, Optional
-
-from watchfiles import Change
-
+from typing import Set, Dict
 
 
 @dataclass

{basic_memory-0.2.21.dist-info → basic_memory-0.3.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: basic-memory
-Version: 0.2.21
+Version: 0.3.0
 Summary: Local-first knowledge management combining Zettelkasten with knowledge graphs
 Project-URL: Homepage, https://github.com/basicmachines-co/basic-memory
 Project-URL: Repository, https://github.com/basicmachines-co/basic-memory

{basic_memory-0.2.21.dist-info → basic_memory-0.3.0.dist-info}/RECORD

@@ -1,6 +1,6 @@
-basic_memory/__init__.py,sha256=_ij75bUYM3LqRQYHrJ1kLnDuUyauuHilEBF96OFw9hA,122
+basic_memory/__init__.py,sha256=-7V4k4cOLWxlII4cUrwXI3O7dNeKe4KfomyyMZla3ws,122
 basic_memory/config.py,sha256=PZA2qgwKACvKfRcM3H-BPB_8FYVhgZAwTmlKJ3ROfhU,1643
-basic_memory/db.py,sha256=BFZCp4aJ7Xj9_ZCMz0rnSBuCy5xIMvvWjSImmuKzdWg,4605
+basic_memory/db.py,sha256=cN8g_5dTMjQZKCvy_NwWs3dXV5lZZL7DCeu99guIK5k,4613
 basic_memory/deps.py,sha256=UzivBw6e6iYcU_8SQ8LNCmSsmFyHfjdzfWvnfNzqbRc,5375
 basic_memory/file_utils.py,sha256=gp7RCFWaddFnELIyTc1E19Rk8jJsrKshG2n8ZZR-kKA,5751
 basic_memory/utils.py,sha256=HiLorP5_YCQeNeTcDqvnkrwY7OBaFRS3i_hdV9iWKLs,2374
@@ -10,21 +10,21 @@ basic_memory/alembic/migrations.py,sha256=CIbkMHEKZ60aDUhFGSQjv8kDNM7sazfvEYHGGc
 basic_memory/alembic/script.py.mako,sha256=MEqL-2qATlST9TAOeYgscMn1uy6HUS9NFvDgl93dMj8,635
 basic_memory/alembic/versions/3dae7c7b1564_initial_schema.py,sha256=lTbWlAnd1es7xU99DoJgfaRe1_Kte8TL98riqeKGV80,4363
 basic_memory/api/__init__.py,sha256=wCpj-21j1D0KzKl9Ql6unLBVFY0K1uGp_FeSZRKtqpk,72
-basic_memory/api/app.py,sha256=AEHcslN4SBq5Ni7q7wkG4jDH0-SwMWV2DeTdaUSQKns,2083
+basic_memory/api/app.py,sha256=3ddcWTxVjMy_5SUq89kROhMwosZqcr67Q5evOlSR9GE,1389
 basic_memory/api/routers/__init__.py,sha256=iviQ1QVYobC8huUuyRhEjcA0BDjrOUm1lXHXhJkxP9A,239
 basic_memory/api/routers/knowledge_router.py,sha256=cMLhRczOfSRnsZdyR0bSS8PENPRTu70dlwaV27O34bs,5705
 basic_memory/api/routers/memory_router.py,sha256=pF0GzmWoxmjhtxZM8jCmfLwqjey_fmXER5vYbD8fsQw,4556
 basic_memory/api/routers/resource_router.py,sha256=_Gp5HSJr-L-GUkQKbEP2bAZvCY8Smd-sBNWpGyqXS4c,1056
 basic_memory/api/routers/search_router.py,sha256=dCRnBbp3r966U8UYwgAaxZBbg7yX7pC8QJqagdACUi0,1086
 basic_memory/cli/__init__.py,sha256=arcKLAWRDhPD7x5t80MlviZeYzwHZ0GZigyy3NKVoGk,33
-basic_memory/cli/app.py,sha256=hF4MgYCgFql4J6qi3lguqc6HQdP2gm6PpvtSxKBSjZc,34
+basic_memory/cli/app.py,sha256=y7wU5kOPPpfnRc_J018tE_5dj23S2c4KVa9T-7ak1Ss,285
 basic_memory/cli/main.py,sha256=Vvpmh33MSZJftCENEjzJH3yBbxD4B40Pl6IBIumiVX4,505
 basic_memory/cli/commands/__init__.py,sha256=OQGLaKTsOdPsp2INM_pHzmOlbVfdL0sytBNgvqTqCDY,159
-basic_memory/cli/commands/db.py,sha256=I92CRufPskvHl9c90f5Eg7U7D0uIzLBiwngQuAh5cLk,772
+basic_memory/cli/commands/db.py,sha256=XW2ujzas5j2Gf01NOPQI89L4NK-21GksO_OIekKxv6c,770
 basic_memory/cli/commands/import_memory_json.py,sha256=ZXSRHH_3GgJzmMLvDulakKIpzsKxrZIUmEuWgJmwMOE,5138
-basic_memory/cli/commands/mcp.py,sha256=a0v54iFL01_eykODHuWIupTHCn-COm-WZGdSO5iinc0,563
-basic_memory/cli/commands/status.py,sha256=aNpP8u-ECoVTiL5MIb-D2cXXLJtv6z2z8CMCh5nt2KY,5782
-basic_memory/cli/commands/sync.py,sha256=sb6OGl9IVZLmGfHUm0-aexD365BRTaHJhpwqt0O5yxk,7035
+basic_memory/cli/commands/mcp.py,sha256=BPdThcufdriIvrDskc87a0oCC1BkZ0PZsgNao_-oNKk,611
+basic_memory/cli/commands/status.py,sha256=G7aAdbCuiFe38VFxMTcAfY2DKqol3WIQxYa491ui4yM,5728
+basic_memory/cli/commands/sync.py,sha256=LpoEPstcguhRPT2bwsbAI3ypiY0cDoNn_gxUmLpX21Q,6827
 basic_memory/markdown/__init__.py,sha256=DdzioCWtDnKaq05BHYLgL_78FawEHLpLXnp-kPSVfIc,501
 basic_memory/markdown/entity_parser.py,sha256=sJk8TRUd9cAaIjATiJn7dBQRorrYngRbd7MRVfc0Oc4,3781
 basic_memory/markdown/markdown_processor.py,sha256=mV3pYoDTaQMEl1tA5n_XztBvNlYyH2SzKs4vnKdAet4,4952
@@ -32,12 +32,12 @@ basic_memory/markdown/plugins.py,sha256=gtIzKRjoZsyvBqLpVNnrmzl_cbTZ5ZGn8kcuXxQj
 basic_memory/markdown/schemas.py,sha256=mzVEDUhH98kwETMknjkKw5H697vg_zUapsJkJVi17ho,1894
 basic_memory/markdown/utils.py,sha256=ZtHa-dG--ZwFEUC3jfl04KZGhM_ZWo5b-8d8KpJ90gY,2758
 basic_memory/mcp/__init__.py,sha256=dsDOhKqjYeIbCULbHIxfcItTbqudEuEg1Np86eq0GEQ,35
-basic_memory/mcp/async_client.py,sha256=Eo345wANiBRSM4u3j_Vd6Ax4YtMg7qbWd9PIoFfj61I,236
+basic_memory/mcp/async_client.py,sha256=vMN5nApPA428Oz4Siq2mNTiBjTcM5A5OSZTnX7_sDxE,234
 basic_memory/mcp/server.py,sha256=L92Vit7llaKT9NlPZfxdp67C33niObmRH2QFyUhmnD0,355
 basic_memory/mcp/tools/__init__.py,sha256=MHZmWw016N0qbtC3f186Jg1tPzh2g88_ZsCKJ0oyrrs,873
 basic_memory/mcp/tools/knowledge.py,sha256=2U8YUKCizsAETHCC1mBVKMfCEef6tlc_pa2wOmA9mD4,2016
 basic_memory/mcp/tools/memory.py,sha256=gl4MBm9l2lMOfu_xmUqjoZacWSIHOAYZiAm8z7oDuY8,5203
-basic_memory/mcp/tools/notes.py,sha256=4GKnhDK53UkeZtpZENQ9id9XdemKxLzGwMQJeuX-Kok,3772
+basic_memory/mcp/tools/notes.py,sha256=pe7n0f0_nrkjnq6E4PCr7L8oOvzMnQgthfJNy9Vr3DE,3905
 basic_memory/mcp/tools/search.py,sha256=tx6aIuB2FWmmrvzu3RHSQvszlk-zHcwrWhkLLHWjuZc,1105
 basic_memory/mcp/tools/utils.py,sha256=icm-Xyqw3GxooGYkXqjEjoZvIGy_Z3CPw-uUYBxR_YQ,4831
 basic_memory/models/__init__.py,sha256=Bf0xXV_ryndogvZDiVM_Wb6iV2fHUxYNGMZNWNcZi0s,307
@@ -69,10 +69,10 @@ basic_memory/services/service.py,sha256=V-d_8gOV07zGIQDpL-Ksqs3ZN9l3qf3HZOK1f_YN
 basic_memory/sync/__init__.py,sha256=ko0xLQv1S5U7sAOmIP2XKl03akVPzoY-a9m3TFPcMh4,193
 basic_memory/sync/file_change_scanner.py,sha256=4whJej6t9sxwUp1ox93efJ0bBHSnAr6STpk_PsKU6to,5784
 basic_memory/sync/sync_service.py,sha256=nAOX4N90lbpRJeq5tRR_7PYptIoWwhXMUljE7yrneF4,7087
-basic_memory/sync/utils.py,sha256=uc7VLK34HufKyKavGwTPGU-ARfoQr_jYbjs4fsmUvuo,1233
+basic_memory/sync/utils.py,sha256=wz1Fe7Mb_M5N9vYRQnDKGODiMGcj5MEK16KVJ3eoQ9g,1191
 basic_memory/sync/watch_service.py,sha256=CtKBrP1imI3ZSEgJl7Ffi-JZ_oDGKrhiyGgs41h5QYI,7563
-basic_memory-0.2.21.dist-info/METADATA,sha256=QaWTyvDXjBu1VPbqUJcbncos7QQEsy6MGTFVTyyIkQQ,7540
-basic_memory-0.2.21.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-basic_memory-0.2.21.dist-info/entry_points.txt,sha256=IDQa_VmVTzmvMrpnjhEfM0S3F--XsVGEj3MpdJfuo-Q,59
-basic_memory-0.2.21.dist-info/licenses/LICENSE,sha256=hIahDEOTzuHCU5J2nd07LWwkLW7Hko4UFO__ffsvB-8,34523
-basic_memory-0.2.21.dist-info/RECORD,,
+basic_memory-0.3.0.dist-info/METADATA,sha256=ACdUnxrfMPaAGPhpaQsxlTktIJm-6Dqoyi3x8jBak4Q,7539
+basic_memory-0.3.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+basic_memory-0.3.0.dist-info/entry_points.txt,sha256=IDQa_VmVTzmvMrpnjhEfM0S3F--XsVGEj3MpdJfuo-Q,59
+basic_memory-0.3.0.dist-info/licenses/LICENSE,sha256=hIahDEOTzuHCU5J2nd07LWwkLW7Hko4UFO__ffsvB-8,34523
+basic_memory-0.3.0.dist-info/RECORD,,