basepair 1.5__0-py3.8.egg

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Files changed (65) hide show
  1. EGG-INFO/PKG-INFO +27 -0
  2. EGG-INFO/SOURCES.txt +38 -0
  3. EGG-INFO/dependency_links.txt +1 -0
  4. EGG-INFO/requires.txt +5 -0
  5. EGG-INFO/scripts/basepair +637 -0
  6. EGG-INFO/top_level.txt +1 -0
  7. EGG-INFO/zip-safe +1 -0
  8. basepair/__init__.py +32 -0
  9. basepair/__pycache__/__init__.cpython-38.pyc +0 -0
  10. basepair/__pycache__/api.cpython-38.pyc +0 -0
  11. basepair/api.py +1353 -0
  12. basepair/helpers/__init__.py +3 -0
  13. basepair/helpers/__pycache__/__init__.cpython-38.pyc +0 -0
  14. basepair/helpers/__pycache__/eprint.cpython-38.pyc +0 -0
  15. basepair/helpers/__pycache__/nice_print.cpython-38.pyc +0 -0
  16. basepair/helpers/__pycache__/set_filter.cpython-38.pyc +0 -0
  17. basepair/helpers/eprint.py +8 -0
  18. basepair/helpers/nice_print.py +170 -0
  19. basepair/helpers/set_filter.py +18 -0
  20. basepair/infra/__init__.py +0 -0
  21. basepair/infra/__pycache__/__init__.cpython-38.pyc +0 -0
  22. basepair/infra/configuration/__init__.py +1 -0
  23. basepair/infra/configuration/__pycache__/__init__.cpython-38.pyc +0 -0
  24. basepair/infra/configuration/__pycache__/parser.cpython-38.pyc +0 -0
  25. basepair/infra/configuration/parser.py +67 -0
  26. basepair/infra/webapp/__init__.py +12 -0
  27. basepair/infra/webapp/__pycache__/__init__.cpython-38.pyc +0 -0
  28. basepair/infra/webapp/__pycache__/abstract.cpython-38.pyc +0 -0
  29. basepair/infra/webapp/__pycache__/analysis.cpython-38.pyc +0 -0
  30. basepair/infra/webapp/__pycache__/file.cpython-38.pyc +0 -0
  31. basepair/infra/webapp/__pycache__/gene.cpython-38.pyc +0 -0
  32. basepair/infra/webapp/__pycache__/genome.cpython-38.pyc +0 -0
  33. basepair/infra/webapp/__pycache__/genome_file.cpython-38.pyc +0 -0
  34. basepair/infra/webapp/__pycache__/host.cpython-38.pyc +0 -0
  35. basepair/infra/webapp/__pycache__/module.cpython-38.pyc +0 -0
  36. basepair/infra/webapp/__pycache__/pipeline.cpython-38.pyc +0 -0
  37. basepair/infra/webapp/__pycache__/project.cpython-38.pyc +0 -0
  38. basepair/infra/webapp/__pycache__/sample.cpython-38.pyc +0 -0
  39. basepair/infra/webapp/__pycache__/upload.cpython-38.pyc +0 -0
  40. basepair/infra/webapp/__pycache__/user.cpython-38.pyc +0 -0
  41. basepair/infra/webapp/abstract.py +128 -0
  42. basepair/infra/webapp/analysis.py +10 -0
  43. basepair/infra/webapp/file.py +10 -0
  44. basepair/infra/webapp/gene.py +10 -0
  45. basepair/infra/webapp/genome.py +10 -0
  46. basepair/infra/webapp/genome_file.py +10 -0
  47. basepair/infra/webapp/host.py +10 -0
  48. basepair/infra/webapp/module.py +10 -0
  49. basepair/infra/webapp/pipeline.py +10 -0
  50. basepair/infra/webapp/project.py +10 -0
  51. basepair/infra/webapp/sample.py +10 -0
  52. basepair/infra/webapp/upload.py +10 -0
  53. basepair/infra/webapp/user.py +48 -0
  54. basepair/utils/__init__.py +0 -0
  55. basepair/utils/__pycache__/__init__.cpython-38.pyc +0 -0
  56. basepair/utils/__pycache__/colors.cpython-38.pyc +0 -0
  57. basepair/utils/__pycache__/monitor.cpython-38.pyc +0 -0
  58. basepair/utils/__pycache__/s3.cpython-38.pyc +0 -0
  59. basepair/utils/__pycache__/sqs.cpython-38.pyc +0 -0
  60. basepair/utils/__pycache__/swf.cpython-38.pyc +0 -0
  61. basepair/utils/colors.py +43 -0
  62. basepair/utils/monitor.py +38 -0
  63. basepair/utils/s3.py +77 -0
  64. basepair/utils/sqs.py +147 -0
  65. basepair/utils/swf.py +129 -0
EGG-INFO/PKG-INFO ADDED
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+ Metadata-Version: 2.1
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+ Name: basepair
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+ Version: 1.5.0
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+ Summary: Python client for Basepair's API
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+ Home-page: https://bitbucket.org/basepair/basepair
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+ Author: Basepair
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+ Author-email: info@basepairtech.com
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+ License: UNKNOWN
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+ Download-URL: https://bitbucket.org/basepair/basepair/get/1.5.0.tar.gz
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+ Description: Python client for Basepair
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+ ======================
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+
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+ Python bindings for Basepair's API and command line interface (CLI).
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+
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+ Keywords: bioinformatics,ngs analysis,dna-seq,rna-seq,chip-seq,atac-seq
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+ Platform: UNKNOWN
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+ Classifier: Development Status :: 5 - Production/Stable
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+ Classifier: Intended Audience :: Healthcare Industry
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+ Classifier: Intended Audience :: Science/Research
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+ Classifier: License :: Free for non-commercial use
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+ Classifier: Natural Language :: English
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+ Classifier: Operating System :: OS Independent
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+ Classifier: Programming Language :: Python
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+ Classifier: Programming Language :: Python :: 2.7
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+ Classifier: Programming Language :: Python :: 3.6
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+ Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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+ Description-Content-Type: text/markdown
EGG-INFO/SOURCES.txt ADDED
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+ README.md
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+ setup.cfg
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+ setup.py
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+ basepair/__init__.py
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+ basepair/api.py
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+ basepair.egg-info/PKG-INFO
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+ basepair.egg-info/SOURCES.txt
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+ basepair.egg-info/dependency_links.txt
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+ basepair.egg-info/requires.txt
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+ basepair.egg-info/top_level.txt
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+ basepair/helpers/__init__.py
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+ basepair/helpers/eprint.py
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+ basepair/helpers/nice_print.py
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+ basepair/helpers/set_filter.py
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+ basepair/infra/__init__.py
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+ basepair/infra/configuration/__init__.py
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+ basepair/infra/configuration/parser.py
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+ basepair/infra/webapp/__init__.py
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+ basepair/infra/webapp/abstract.py
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+ basepair/infra/webapp/analysis.py
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+ basepair/infra/webapp/file.py
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+ basepair/infra/webapp/gene.py
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+ basepair/infra/webapp/genome.py
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+ basepair/infra/webapp/genome_file.py
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+ basepair/infra/webapp/host.py
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+ basepair/infra/webapp/module.py
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+ basepair/infra/webapp/pipeline.py
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+ basepair/infra/webapp/project.py
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+ basepair/infra/webapp/sample.py
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+ basepair/infra/webapp/upload.py
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+ basepair/infra/webapp/user.py
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+ basepair/utils/__init__.py
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+ basepair/utils/colors.py
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+ basepair/utils/monitor.py
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+ basepair/utils/s3.py
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+ basepair/utils/sqs.py
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+ basepair/utils/swf.py
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+ bin/basepair
EGG-INFO/dependency_links.txt ADDED
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+
EGG-INFO/requires.txt ADDED
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+ boto3
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+ future
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+ requests
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+ awscli
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+ tabulate