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aspcap 0.2.0__py3-none-any.whl

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Files changed (16) hide show

aspcap/__init__.py +8 -0
aspcap/abundances.py +73 -0
aspcap/cli.py +64 -0
aspcap/continuum.py +437 -0
aspcap/data/apogee-dr17-mgiant-full-weights.json +1 -0
aspcap/data/apogee-dr17-mgiant-full.hdr +15 -0
aspcap/data/apogee-dr17-mgiant-full.unf +0 -0
aspcap/ferre.py +456 -0
aspcap/spectrum.py +551 -0
aspcap-0.2.0.dist-info/METADATA +185 -0
aspcap-0.2.0.dist-info/RECORD +16 -0
aspcap-0.2.0.dist-info/WHEEL +5 -0
aspcap-0.2.0.dist-info/entry_points.txt +2 -0
aspcap-0.2.0.dist-info/licenses/LICENSE +21 -0
aspcap-0.2.0.dist-info/licenses/LICENSE-DOPPLER +21 -0
aspcap-0.2.0.dist-info/top_level.txt +1 -0

aspcap/__init__.py ADDED Viewed

@@ -0,0 +1,8 @@
+"""Spectral data, external continuum normalization, and FERRE abundance fits."""
+from .abundances import fit_abundance
+from .ferre import Grid
+from .spectrum import Spec1D
+from . import continuum
+__all__ = ["Grid", "fit_abundance", "Spec1D", "continuum"]

aspcap/abundances.py ADDED Viewed

@@ -0,0 +1,73 @@
+"""Fit an individual species using the continuum and labels of a global fit."""
+from math import isclose, isfinite
+import numpy as np
+from .ferre import run_ferre
+def fit_abundance(grid, wavelength, flux, error, continuum, parameters, *,
+                  star_id, species, label, windows, add_labels=(),
+                  executable="ferre", keep_runs=False, run_root=None, mask=None):
+    """Return a result row and a model on the native grid.
+    Inputs are in the grid's wavelength units and air/vacuum convention.
+    The optional mask uses True for unusable pixels.
+    Windows are inclusive (lower, upper) pairs with unit weights. The optional
+    add_labels are fixed global-fit coordinates added to report [X/H].
+    """
+    npix = len(grid.wavelengths)
+    badmask = np.zeros(npix, bool) if mask is None else np.asarray(mask, dtype=bool)
+    if badmask.shape != (npix,):
+        raise ValueError("mask must have one Boolean value per grid pixel (True means bad)")
+    if any(len(values) != npix for values in (wavelength, flux, error, continuum)):
+        raise ValueError("Spectrum and continuum must have one row per grid pixel")
+    if not all(isclose(a, b, rel_tol=0, abs_tol=1e-4 * (grid.wavelengths[1] - grid.wavelengths[0]))
+               for a, b in zip(wavelength, grid.wavelengths)):
+        raise ValueError("Spectrum wavelengths do not match the native grid")
+    if label not in grid.labels:
+        raise ValueError(f"Unknown abundance label {label!r}. Available: {grid.labels}")
+    if (label in add_labels or len(set(add_labels)) != len(add_labels)
+            or any(name not in parameters or name not in grid.labels for name in add_labels)):
+        raise ValueError("Abundance conversion labels must be distinct fixed grid labels")
+    if not windows or any(not (isfinite(lo) and isfinite(hi) and lo <= hi)
+                          for lo, hi in windows):
+        raise ValueError("Provide one or more finite wavelength windows (lower, upper)")
+    normalized_flux, normalized_error, weights = [], [], []
+    for wave, value, sigma, scale, bad in zip(wavelength, flux, error, continuum, badmask):
+        if not isfinite(scale) or scale <= 0:
+            raise ValueError("Global continuum values must be finite and positive")
+        value, sigma = value / scale, sigma / scale
+        good = not bad and isfinite(value) and isfinite(sigma) and sigma > 0
+        normalized_flux.append(value if good else 1.0)
+        normalized_error.append(sigma if good else 1e10)
+        weights.append(int(good and any(lo <= wave <= hi for lo, hi in windows)))
+    pixels_used = sum(weights)
+    if pixels_used < 2:
+        raise ValueError(f"{species}: fewer than two usable pixels in the element windows")
+    fit = run_ferre(grid, normalized_flux, normalized_error, parameters, label, weights,
+                    executable=executable, keep_runs=keep_runs, run_root=run_root)
+    axis = grid.labels.index(label)
+    raw = fit.parameters[label]
+    low, step = grid.lower[axis], grid.step[axis]
+    high = low + (grid.counts[axis] - 1) * step
+    flags = []
+    if min(raw - low, high - raw) <= 0.125 * step:
+        flags.append("GRID_EDGE")
+    if fit.errors[label] is None:
+        flags.append("NO_UNCERTAINTY")
+    result = {
+        "star_id": star_id,
+        "species": species,
+        "grid_label": label,
+        "raw_value": raw,
+        "abundance_scale": f"[{species}/H]",
+        "abundance": raw + sum(parameters[name] for name in add_labels),
+        "conditional_error": fit.errors[label],
+        "ferre_reduced_chi2": fit.reduced_chi2,
+        "pixels_used": pixels_used,
+        "flags": "|".join(flags),
+    }
+    pixels = zip(wavelength, normalized_flux, normalized_error, fit.model, weights)
+    return result, pixels

aspcap/cli.py ADDED Viewed

@@ -0,0 +1,64 @@
+"""Command-line interface for a single HGE abundance fit."""
+import argparse
+import csv
+import json
+from pathlib import Path
+from . import Grid, fit_abundance
+def _run(args):
+    path = args.config.resolve()
+    config = json.loads(path.read_text())
+    species = json.loads((path.parent / config["species_file"]).read_text())
+    grid = Grid.read(path.parent / config["grid"])
+    expected_frame = "vacuum" if grid.vacuum else "air"
+    if config["wavelength_frame"] != expected_frame:
+        raise ValueError(f"Grid uses {expected_frame} wavelengths")
+    with (path.parent / config["spectrum"]).open(newline="") as file:
+        rows = list(csv.DictReader(file))
+    columns = [[float(row[name]) for row in rows]
+               for name in ("wavelength", "flux", "error", "continuum")]
+    executable = args.ferre or config.get("ferre", "ferre")
+    if not args.ferre and "/" in executable:
+        executable = path.parent / executable
+    result, pixels = fit_abundance(
+        grid, *columns, config["parameters"], star_id=config["star_id"],
+        species=species["species"], label=species["label"], windows=species["windows"],
+        add_labels=species.get("add_labels", ()), executable=executable,
+        keep_runs=args.keep_runs, run_root=args.run_root,
+    )
+    if args.pixels:
+        with args.pixels.open("w", newline="") as file:
+            writer = csv.writer(file)
+            writer.writerow(("wavelength", "normalized_flux", "normalized_error", "model", "weight"))
+            writer.writerows(pixels)
+    with args.output.open("w", newline="") as file:
+        writer = csv.DictWriter(file, fieldnames=result)
+        writer.writeheader()
+        writer.writerow(result)
+    print(f"Wrote {args.output}")
+def main():
+    parser = argparse.ArgumentParser(prog="aspcap", description=__doc__)
+    commands = parser.add_subparsers(dest="command", required=True)
+    abundances = commands.add_parser("abundances", help="fit an individual species")
+    abundances.add_argument("config", type=Path)
+    abundances.add_argument("--ferre", help="FERRE executable name or path")
+    abundances.add_argument("--output", type=Path, default=Path("abundance.csv"))
+    abundances.add_argument("--pixels", type=Path, help="save normalized data, model, and weights")
+    abundances.add_argument("--keep-runs", action="store_true")
+    abundances.add_argument("--run-root", type=Path, help="existing directory for FERRE run files")
+    args = parser.parse_args()
+    try:
+        if args.pixels and args.pixels.resolve() == args.output.resolve():
+            raise ValueError("--pixels and --output must use different files")
+        _run(args)
+    except (OSError, ValueError, KeyError, TypeError, RuntimeError) as error:
+        parser.exit(1, f"aspcap: {error}\n")
+if __name__ == "__main__":
+    main()

aspcap/continuum.py ADDED Viewed

@@ -0,0 +1,437 @@
+"""External, order-by-order continuum estimation. No FERRE calls are made.
+Methods are deliberately explicit: polynomial/spline fits, a running median,
+a binned percentile envelope, or a median correction to a data/model ratio.
+These are configurable estimators, not claims of exact DR17 reproduction.
+"""
+from copy import deepcopy
+from dataclasses import dataclass, field
+import numpy as np
+from .spectrum import Spec1D
+def _aligned(a, b):
+    return (
+        a is None
+        and b is None
+        or (a is not None and b is not None and np.array_equal(a, b, equal_nan=True))
+    )
+@dataclass
+class ContinuumResult:
+    """Continuum estimate and diagnostics, independent of a spectrum object.
+    continuum : ndarray
+        Estimated divisor in the input flux units; dimensionless for model_ratio.
+        Invalid orders and padding contain NaN.
+    fit_mask : ndarray of bool
+        True where an original sample contributed to the estimate (opposite to
+        the spectrum's bad-pixel mask). Interpolated bad pixels are not fit data.
+    flags : tuple of tuples
+        Per-order quality flags. Empty tuples indicate successful estimation.
+    settings, parameters : dict, tuple
+        Method settings and per-order coefficients/support diagnostics.
+    Pixel errors rescaled by ``apply`` remain conditional on this continuum;
+    continuum-estimation uncertainty is not added to the error array.
+    """
+    continuum: np.ndarray
+    fit_mask: np.ndarray
+    flags: tuple
+    settings: dict
+    parameters: tuple
+    _wave: object = field(repr=False)
+    _numpix: np.ndarray = field(repr=False)
+    def apply(self, spectrum, *, inplace=False):
+        """Divide flux/errors by the same scale; copy by default.
+        Accepts Doppler-compatible objects and preserves their type. Invalid
+        scales remain masked with NaN flux/infinite errors. This method does not
+        change wavelength, bitmasks, or uncertainty floors. Repeated explicit
+        applications compose cached continuum factors and retain the raw data.
+        """
+        data = Spec1D.from_spectrum(spectrum)
+        if (
+            data.shape != self.continuum.shape
+            or not _aligned(data.wave, self._wave)
+            or not np.array_equal(data.numpix, self._numpix)
+        ):
+            raise ValueError(
+                "Continuum result does not match the spectrum wavelengths/order layout"
+            )
+        out = spectrum if inplace else deepcopy(spectrum)
+        scale = self.continuum
+        good_scale = np.isfinite(scale) & (scale > 0)
+        good = data.valid & good_scale
+        old = getattr(spectrum, "_cont", None) if data.normalized else None
+        if data.normalized and old is None:
+            raise ValueError(
+                "Normalized input has no cached continuum for composing corrections"
+            )
+        flux = np.full(data.shape, np.nan)
+        np.divide(data.flux, scale, out=flux, where=good)
+        error = None
+        if data.err is not None:
+            error = np.full(data.shape, np.inf)
+            np.divide(data.err, scale, out=error, where=good)
+        if not data.normalized:
+            out._flux = data.flux.copy()
+            out._err = None if data.err is None else data.err.copy()
+            out._flux_unit = data.flux_unit
+        out.flux, out.err, out.mask = flux, error, ~good
+        out.cont = scale.copy() if old is None else np.asarray(old) * scale
+        out.normalized = True
+        out.flux_unit = (
+            data.flux_unit if self.settings["method"] == "model_ratio" else ""
+        )
+        history = deepcopy(getattr(out, "continuum_history", []))
+        history.append(
+            dict(settings=deepcopy(self.settings), flags=deepcopy(self.flags))
+        )
+        out.continuum_history = history
+        return out
+def from_array(spectrum, continuum):
+    """Wrap a supplied/callback continuum without fitting or changing inputs."""
+    data = Spec1D.from_spectrum(spectrum)
+    array = np.asarray(continuum, dtype=float)
+    if array.shape != data.shape:
+        raise ValueError("Continuum must match the flux shape")
+    valid = np.isfinite(array) & (array > 0) & data.valid
+    flags = tuple(
+        () if np.any(Spec1D._column(valid, i)[:n]) else ("INVALID_CONTINUUM",)
+        for i, n in enumerate(data.numpix)
+    )
+    return ContinuumResult(
+        array.copy(),
+        valid,
+        flags,
+        {"method": "provided"},
+        tuple({} for _ in data.numpix),
+        None if data.wave is None else data.wave.copy(),
+        data.numpix.copy(),
+    )
+def fit(
+    spectrum,
+    *,
+    method="chebyshev",
+    degree=None,
+    coordinate="pixel",
+    weighted=False,
+    clip=None,
+    max_iterations=5,
+    window=151,
+    percentile=90.0,
+    bins=20,
+    smoothing=None,
+    model=None,
+    ratio_bounds=(0.1, 10.0),
+    mode="mirror",
+    on_failure="raise",
+):
+    """Estimate a continuum independently in each spectral order.
+    Parameters
+    ----------
+    spectrum : Spec1D or Doppler-compatible object
+        Supplies flux, wave, optional err/mask, and optional numpix. Not modified.
+    method : {'chebyshev', 'polynomial', 'spline', 'median', 'percentile', 'model_ratio'}
+        Polynomial is an alias of Chebyshev (same polynomial space). Percentile
+        bins positive flux and linearly interpolates bin estimates, with constant
+        endpoints. Model_ratio smooths flux/model; both inputs must already use
+        comparable normalization, wavelength sampling, frame, and resolution.
+    degree : int, optional
+        Polynomial degree (default 4) or spline degree (default 3, range 1..5).
+    coordinate : {'pixel', 'wavelength'}
+        Fitting coordinate, rescaled per order. Pixel is suitable for APOGEE's
+        regular log-wavelength grid. Wavelength mode requires distinct samples.
+    weighted : bool
+        Inverse-variance polynomial/spline least squares; requires errors.
+        False by default. Filtering methods do not accept weighted fitting.
+    clip : (lower, upper), optional
+        Iterative residual rejection in robust MAD sigma units for polynomial or
+        spline fits only. Each side can be None. Disabled by default. This is
+        independent of FERRE's REJECTCONT; no FERRE setting is changed.
+    max_iterations : int
+        Maximum rejection/refit rounds after the initial fit.
+    window : odd int
+        Running filter width in pixels, for median/model_ratio (default 151).
+    percentile, bins : float, int
+        Percentile (0..100) and number of bins for the percentile estimator.
+    smoothing : nonnegative float, optional
+        Spline weighted residual sum bound. Default uses supplied errors, or a
+        robust adjacent-difference noise estimate; it scales with flux units.
+    model : array or spectrum object, optional
+        Required for model_ratio; same order layout. A spectrum's masks are used.
+    ratio_bounds : (float, float)
+        Positive allowed data/model ratio range before filtering.
+    mode : str
+        scipy.ndimage median-filter boundary mode; default mirror. Filtering
+        fills rejected positions by within-order linear interpolation first.
+    on_failure : {'raise', 'mask'}
+        Raise for insufficient support/nonpositive continuum, or return NaN for
+        that order with a quality flag. Never substitute a valid unity continuum.
+    Returns
+    -------
+    ContinuumResult
+        Divisor, original-sample fit mask, method parameters, and per-order flags.
+        Applying the result is a separate operation with copy-by-default behavior.
+    """
+    data = Spec1D.from_spectrum(spectrum)
+    methods = (
+        "chebyshev",
+        "polynomial",
+        "spline",
+        "median",
+        "percentile",
+        "model_ratio",
+    )
+    if method not in methods:
+        raise ValueError(f"Unknown method {method!r}; choose from {methods}")
+    if coordinate not in ("pixel", "wavelength") or on_failure not in ("raise", "mask"):
+        raise ValueError("Invalid coordinate or on_failure setting")
+    fitted = method in ("chebyshev", "polynomial", "spline")
+    if weighted and (not fitted or data.err is None):
+        raise ValueError(
+            "Weighted fitting requires a polynomial/spline method and uncertainties"
+        )
+    if degree is None:
+        degree = 3 if method == "spline" else 4
+    if (
+        not isinstance(degree, (int, np.integer))
+        or degree < 0
+        or (method == "spline" and not 1 <= degree <= 5)
+    ):
+        raise ValueError("Invalid fitting degree")
+    if not isinstance(max_iterations, (int, np.integer)) or max_iterations < 0:
+        raise ValueError("max_iterations must be a nonnegative integer")
+    if clip is not None:
+        if (
+            not fitted
+            or len(clip) != 2
+            or any(v is not None and (not np.isfinite(v) or v <= 0) for v in clip)
+        ):
+            raise ValueError(
+                "clip requires a fit method and positive lower/upper limits or None"
+            )
+    if method in ("median", "model_ratio"):
+        if not isinstance(window, (int, np.integer)) or window < 1 or window % 2 != 1:
+            raise ValueError("window must be a positive odd number of pixels")
+        if mode not in ("reflect", "constant", "nearest", "mirror", "wrap"):
+            raise ValueError("Invalid median-filter boundary mode")
+    if method == "percentile" and (
+        not np.isfinite(percentile)
+        or not 0 <= percentile <= 100
+        or not isinstance(bins, (int, np.integer))
+        or bins < 2
+    ):
+        raise ValueError("percentile must be 0..100 and bins an integer >=2")
+    if smoothing is not None and (not np.isfinite(smoothing) or smoothing < 0):
+        raise ValueError("smoothing must be finite and nonnegative")
+    if coordinate == "wavelength" and data.wave is None:
+        raise ValueError("Wavelength-coordinate fitting requires wavelengths")
+    model_data = None
+    model_flux = None
+    if method == "model_ratio":
+        if model is None:
+            raise ValueError("model_ratio requires a reference model")
+        if (
+            len(ratio_bounds) != 2
+            or not np.isfinite(ratio_bounds).all()
+            or not 0 < ratio_bounds[0] < ratio_bounds[1]
+        ):
+            raise ValueError("Invalid ratio bounds")
+        if hasattr(model, "flux"):
+            model_data = Spec1D.from_spectrum(model)
+            if not _aligned(data.wave, model_data.wave) or not np.array_equal(
+                data.numpix, model_data.numpix
+            ):
+                raise ValueError(
+                    "Reference model wavelengths/order layout do not match"
+                )
+            if (
+                data.wavevac != model_data.wavevac
+                or data.wave_unit != model_data.wave_unit
+            ):
+                raise ValueError(
+                    "Reference model wavelength convention/units do not match"
+                )
+            if (
+                data.flux_unit is not None
+                and model_data.flux_unit is not None
+                and data.flux_unit != model_data.flux_unit
+            ):
+                raise ValueError("Reference model flux units do not match")
+            model_flux = model_data.flux
+        else:
+            model_flux = np.asarray(model, dtype=float)
+        if model_flux.shape != data.shape:
+            raise ValueError("Reference model must match the flux shape")
+    continuum = np.full(data.shape, np.nan)
+    used = np.zeros(data.shape, bool)
+    flags, parameters = [], []
+    for order, count in enumerate(data.numpix):
+        y = Spec1D._column(data.flux, order)[:count].copy()
+        good = Spec1D._column(data.valid, order)[:count].copy()
+        errors = None if data.err is None else Spec1D._column(data.err, order)[:count]
+        x = (
+            np.arange(count, dtype=float)
+            if coordinate == "pixel"
+            else Spec1D._column(data.wave, order)[:count].copy()
+        )
+        good &= np.isfinite(x) & np.isfinite(y)
+        if method == "model_ratio":
+            m = Spec1D._column(model_flux, order)[:count]
+            valid_model = np.isfinite(m) & (m > 0)
+            if model_data is not None:
+                valid_model &= Spec1D._column(model_data.valid, order)[:count]
+            ratio = np.full(count, np.nan)
+            np.divide(y, m, out=ratio, where=valid_model)
+            y = ratio
+            good &= valid_model & (y >= ratio_bounds[0]) & (y <= ratio_bounds[1])
+        if method == "percentile":
+            good &= y > 0
+        try:
+            minimum = degree + 1 if fitted else 2
+            if np.sum(good) < minimum:
+                raise ValueError("INSUFFICIENT_PIXELS")
+            xmin, xmax = np.min(x[good]), np.max(x[good])
+            z = np.zeros(count) if xmax == xmin else 2 * (x - xmin) / (xmax - xmin) - 1
+            details = {}
+            for iteration in range((max_iterations if clip else 0) + 1):
+                if np.sum(good) < minimum:
+                    raise ValueError("INSUFFICIENT_PIXELS")
+                if method in ("chebyshev", "polynomial"):
+                    matrix = np.polynomial.chebyshev.chebvander(z[good], degree)
+                    rhs = y[good]
+                    if weighted:
+                        matrix = matrix / errors[good, None]
+                        rhs = rhs / errors[good]
+                    coef, _, rank, _ = np.linalg.lstsq(matrix, rhs, rcond=None)
+                    if rank < degree + 1:
+                        raise ValueError("SINGULAR_FIT")
+                    curve = np.polynomial.chebyshev.chebval(z, coef)
+                    details = dict(
+                        coefficients=coef.tolist(), domain=[float(xmin), float(xmax)]
+                    )
+                elif method == "spline":
+                    from scipy.interpolate import UnivariateSpline
+                    select = np.flatnonzero(good)
+                    select = select[np.argsort(z[select])]
+                    if np.any(np.diff(z[select]) <= 0):
+                        raise ValueError("DUPLICATE_COORDINATES")
+                    bound = smoothing
+                    if bound is None:
+                        if weighted:
+                            bound = len(select)
+                        elif errors is not None:
+                            bound = float(np.sum(errors[select] ** 2))
+                        else:
+                            diff = np.diff(y[select])
+                            noise = (
+                                1.4826
+                                * np.median(np.abs(diff - np.median(diff)))
+                                / np.sqrt(2)
+                            )
+                            bound = len(select) * noise**2
+                    spline = UnivariateSpline(
+                        z[select],
+                        y[select],
+                        w=1 / errors[select] if weighted else None,
+                        k=degree,
+                        s=bound,
+                        ext=0,
+                    )
+                    curve = spline(z)
+                    details = dict(
+                        knots=spline.get_knots().tolist(),
+                        coefficients=spline.get_coeffs().tolist(),
+                        domain=[float(xmin), float(xmax)],
+                        smoothing=float(bound),
+                    )
+                elif method == "percentile":
+                    edges = np.linspace(xmin, xmax, bins + 1)
+                    groups = np.clip(
+                        np.searchsorted(edges, x[good], side="right") - 1, 0, bins - 1
+                    )
+                    centres, levels = [], []
+                    for group in np.unique(groups):
+                        sel = groups == group
+                        centres.append(float(np.mean(x[good][sel])))
+                        levels.append(float(np.percentile(y[good][sel], percentile)))
+                    if len(centres) < 2:
+                        raise ValueError("INSUFFICIENT_BINS")
+                    curve = np.interp(x, centres, levels)
+                    details = dict(bin_coordinates=centres, bin_levels=levels)
+                else:
+                    from scipy.ndimage import median_filter
+                    # Filtering is in pixel space even when fitting coordinates
+                    # are wavelengths; there is never interpolation across orders.
+                    pixels = np.arange(count)
+                    filled = np.interp(pixels, pixels[good], y[good])
+                    curve = median_filter(filled, size=window, mode=mode)
+                if clip is None or iteration == max_iterations:
+                    break
+                residual = y - curve
+                centre = np.median(residual[good])
+                sigma = max(
+                    1.4826 * np.median(np.abs(residual[good] - centre)),
+                    32 * np.finfo(float).eps * max(1.0, float(np.max(abs(y[good])))),
+                )
+                keep = good.copy()
+                if clip[0] is not None:
+                    keep &= residual - centre >= -clip[0] * sigma
+                if clip[1] is not None:
+                    keep &= residual - centre <= clip[1] * sigma
+                if np.array_equal(keep, good):
+                    break
+                good = keep
+            if not np.all(np.isfinite(curve[good])) or np.any(curve[good] <= 0):
+                raise ValueError("INVALID_CONTINUUM")
+            # Masked samples cannot become fit data, but a valid polynomial may
+            # still be evaluated at their positions. Invalid scales stay NaN.
+            curve[~np.isfinite(curve) | (curve <= 0)] = np.nan
+            Spec1D._column(continuum, order)[:count] = curve
+            Spec1D._column(used, order)[:count] = good
+            details["pixels_used"] = int(sum(good))
+            flags.append(())
+            parameters.append(details)
+        except (ValueError, np.linalg.LinAlgError) as error:
+            if on_failure == "raise":
+                raise ValueError(f"Order {order}: {error}") from error
+            flags.append((str(error),))
+            parameters.append({"pixels_used": int(sum(good))})
+    settings = dict(
+        method=method,
+        degree=degree,
+        coordinate=coordinate,
+        weighted=weighted,
+        clip=clip,
+        max_iterations=max_iterations,
+        window=window,
+        percentile=percentile,
+        bins=bins,
+        smoothing=smoothing,
+        ratio_bounds=ratio_bounds if method == "model_ratio" else None,
+        mode=mode,
+        on_failure=on_failure,
+    )
+    return ContinuumResult(
+        continuum,
+        used,
+        tuple(flags),
+        settings,
+        tuple(parameters),
+        None if data.wave is None else data.wave.copy(),
+        data.numpix.copy(),
+    )

aspcap/data/apogee-dr17-mgiant-full-weights.json ADDED Viewed

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aspcap/data/apogee-dr17-mgiant-full.hdr ADDED Viewed

@@ -0,0 +1,15 @@
+&SYNTH
+ ID = 'APOGEE DR17 M giant 5x5x5'
+ N_OF_DIM = 3
+ N_P = 5 5 5
+ LABEL(1) = 'METALS'
+ LABEL(2) = 'LOGG'
+ LABEL(3) = 'TEFF'
+ LLIMITS = -1.0 0.0 3400
+ STEPS = 0.25 0.5 100
+ NPIX = 8575
+ WAVE = 4.179000 0.000006
+ LOGW = 1
+ VACUUM = 1
+ RESOLUTION = 22500
+/

aspcap/data/apogee-dr17-mgiant-full.unf ADDED Viewed

Binary file