arrayview 0.43.4__py3-none-any.whl → 0.44.0__py3-none-any.whl

arrayview/_analysis.py

@@ -42,6 +42,11 @@ def _build_metadata(session) -> dict:
             # Collection axes are appended after the image dimensions. They
             # select a case; they must not influence the startup plane.
             default_shape = target_shape[:spatial_ndim]
+            # NIfTI metadata identifies the first three axes as anatomical.
+            # Later axes may be echoes, parameters, or time points, so they
+            # must not change which anatomical plane opens first.
+            if getattr(session, "spatial_meta", None) is not None:
+                default_shape = default_shape[:3]
     default_dims = _session_mod._startup_dims_for_data(session.data, default_shape)
     if default_dims is not None:
         meta["default_dims"] = [int(default_dims[0]), int(default_dims[1])]

arrayview/_io.py

@@ -172,7 +172,9 @@ def _nifti_header_with_meta(filepath, *, native=False):
         (abs(norm_rot[i, j]) for i in range(3) for j in range(3) if i != j),
         default=0.0,
     )
-    canonical_shape = tuple(int(img.shape[int(axis)]) for axis in transform[:, 0])
+    canonical_shape = tuple(
+        int(img.shape[int(axis)]) for axis in transform[:, 0]
+    ) + tuple(int(size) for size in img.shape[3:])
     meta = {
         "affine": original_affine,
         "affine_canonical": affine_canonical,