arrayview 0.25.0__py3-none-any.whl → 0.26.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- arrayview/__init__.py +1 -1
- arrayview/_io.py +2 -2
- arrayview/_launcher.py +183 -26
- arrayview/_server.py +3 -0
- arrayview/_stdio_server.py +2 -0
- arrayview/_viewer.html +304 -154
- {arrayview-0.25.0.dist-info → arrayview-0.26.0.dist-info}/METADATA +1 -1
- {arrayview-0.25.0.dist-info → arrayview-0.26.0.dist-info}/RECORD +11 -11
- {arrayview-0.25.0.dist-info → arrayview-0.26.0.dist-info}/WHEEL +0 -0
- {arrayview-0.25.0.dist-info → arrayview-0.26.0.dist-info}/entry_points.txt +0 -0
- {arrayview-0.25.0.dist-info → arrayview-0.26.0.dist-info}/licenses/LICENSE +0 -0
arrayview/__init__.py
CHANGED
arrayview/_io.py
CHANGED
|
@@ -67,7 +67,7 @@ def list_mat_keys(filepath):
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67
67
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for k, v in mat.items():
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68
68
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if k.startswith("_"):
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69
69
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continue
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70
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-
if isinstance(v, np.ndarray) and v.ndim >= 1:
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70
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+
if isinstance(v, np.ndarray) and v.ndim >= 1 and v.dtype.kind in ("b", "i", "u", "f", "c"):
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71
71
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keys.append({"key": k, "shape": list(v.shape), "dtype": str(v.dtype)})
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72
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return keys
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73
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except NotImplementedError:
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@@ -77,7 +77,7 @@ def list_mat_keys(filepath):
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77
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keys = []
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78
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for k in f.keys():
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79
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ds = f[k]
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80
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-
if isinstance(ds, h5py.Dataset) and len(ds.shape) >= 1:
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80
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+
if isinstance(ds, h5py.Dataset) and len(ds.shape) >= 1 and ds.dtype.kind in ("b", "i", "u", "f", "c"):
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81
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keys.append({"key": k, "shape": list(ds.shape), "dtype": str(ds.dtype)})
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82
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f.close()
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83
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return keys
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arrayview/_launcher.py
CHANGED
|
@@ -448,6 +448,17 @@ def _open_webview_cli(
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448
448
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Returns True once the child has imported pywebview and created the window.
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449
449
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Returns False if it crashed; in that case the caller should fall back to browser.
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450
450
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"""
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451
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+
opened, _proc = _open_webview_cli_tracked(url, win_w, win_h, shell_port=shell_port)
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452
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+
return opened
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453
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+
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454
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+
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455
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+
def _open_webview_cli_tracked(
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456
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url: str,
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457
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+
win_w: int,
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458
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+
win_h: int,
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459
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+
shell_port: int | None = None,
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460
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+
) -> tuple[bool, subprocess.Popen | None]:
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461
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+
"""Launch pywebview and return the child process when startup succeeds."""
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451
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import tempfile
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452
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_vprint("[ArrayView] Launching native window (PyWebView)...", flush=True)
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@@ -483,21 +494,64 @@ def _open_webview_cli(
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)
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if stderr_out:
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_vprint(f"[ArrayView] webview stderr: {stderr_out}", flush=True)
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486
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-
return False
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497
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+
return False, None
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if os.path.exists(ready_file):
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try:
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os.unlink(ready_file)
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except OSError:
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pass
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_vprint("[ArrayView] Native window started successfully", flush=True)
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-
return True
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+
return True, proc
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time.sleep(0.02)
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try:
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os.unlink(ready_file)
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except OSError:
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pass
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_vprint("[ArrayView] Native window started successfully", flush=True)
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500
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-
return True
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511
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+
return True, proc
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512
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+
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513
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+
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514
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+
def _server_viewer_connections_seen(port: int, timeout: float = 0.5) -> int:
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515
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+
"""Return the daemon's monotonic viewer WebSocket connection count."""
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516
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+
url = f"http://{_LOOPBACK_HOST}:{port}/ping"
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517
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+
try:
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518
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+
with urllib.request.urlopen(url, timeout=timeout) as resp:
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519
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+
if resp.status != 200:
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520
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return 0
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521
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payload = json.loads(resp.read().decode("utf-8"))
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522
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if payload.get("ok") is True and payload.get("service") == "arrayview":
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return int(
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+
payload.get("viewer_connections_seen")
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525
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+
or payload.get("viewer_sockets")
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526
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or 0
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527
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)
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+
except Exception:
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pass
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530
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+
return 0
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+
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+
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def _wait_for_viewer_connection(
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534
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+
port: int,
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535
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*,
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536
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+
before: int,
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537
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+
timeout: float = 8.0,
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538
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+
) -> bool:
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539
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"""Wait until the backend has accepted a new viewer WebSocket connection."""
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540
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+
deadline = time.monotonic() + timeout
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541
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+
while time.monotonic() < deadline:
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542
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if _server_viewer_connections_seen(port, timeout=0.3) > before:
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543
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+
return True
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544
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+
time.sleep(0.1)
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545
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+
return False
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546
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+
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547
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+
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548
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+
def _terminate_native_process(proc: subprocess.Popen | None) -> None:
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549
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+
if proc is None or proc.poll() is not None:
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550
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+
return
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551
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+
try:
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552
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+
proc.terminate()
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553
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+
except Exception:
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554
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+
return
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501
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502
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503
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# ── Server Port Utilities ─────────────────────────────────────────
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@@ -809,7 +863,15 @@ def _open_cli_existing_server_view(
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809
863
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return
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810
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if notify_webview and not notified:
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811
865
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url_shell = _shell_url(port, sid, name, compare_sids=compare_sids)
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812
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-
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866
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+
seen_before = _server_viewer_connections_seen(port)
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867
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+
opened, proc = _open_webview_cli_tracked(url_shell, 1200, 800)
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868
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+
if not opened or not _wait_for_viewer_connection(port, before=seen_before):
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869
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+
if opened:
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870
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+
_vprint(
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871
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"[ArrayView] Native window did not connect to the backend; falling back to browser",
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872
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flush=True,
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873
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+
)
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874
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+
_terminate_native_process(proc)
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813
875
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_vprint("[ArrayView] Falling back to browser", flush=True)
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814
876
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_print_viewer_location(url)
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815
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_open_browser(
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@@ -993,7 +1055,9 @@ def _handle_cli_spawned_daemon(
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993
1055
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)
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994
1056
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995
1057
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early_webview_opened = False
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1058
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+
early_webview_proc = None
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996
1059
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early_webview_notified = False
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1060
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+
early_webview_connected = False
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997
1061
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if (
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998
1062
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use_webview
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999
1063
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and not is_remote
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@@ -1001,7 +1065,7 @@ def _handle_cli_spawned_daemon(
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1001
1065
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and not compare_files
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1002
1066
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):
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1003
1067
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url_shell_early = _shell_url(port, sid, name)
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1004
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-
early_webview_opened =
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1068
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+
early_webview_opened, early_webview_proc = _open_webview_cli_tracked(
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1005
1069
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url_shell_early, 1400, 900, shell_port=port
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1006
1070
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)
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1007
1071
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@@ -1019,6 +1083,7 @@ def _handle_cli_spawned_daemon(
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1019
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sys.exit(1)
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1020
1084
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1021
1085
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if early_webview_opened:
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1086
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+
seen_before = _server_viewer_connections_seen(port)
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1022
1087
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try:
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1023
1088
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notify_result = _notify_existing_session(
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1024
1089
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port,
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@@ -1030,6 +1095,21 @@ def _handle_cli_spawned_daemon(
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1030
1095
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early_webview_notified = bool(notify_result.get("notified"))
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1031
1096
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except Exception:
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1032
1097
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early_webview_notified = False
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1098
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+
if early_webview_notified:
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1099
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+
early_webview_connected = _wait_for_viewer_connection(
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1100
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+
port,
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1101
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+
before=seen_before,
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1102
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+
)
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1103
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+
if not early_webview_connected:
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1104
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+
_vprint(
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1105
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+
"[ArrayView] Native window did not connect to the backend; falling back to browser",
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1106
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+
flush=True,
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1107
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+
)
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1108
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+
_terminate_native_process(early_webview_proc)
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1109
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+
|
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1110
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+
should_retry_webview = use_webview and not (
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1111
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+
early_webview_opened and not early_webview_connected
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1112
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+
)
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1033
1113
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|
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1034
1114
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_open_cli_spawned_view(
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1035
1115
|
port=port,
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@@ -1037,14 +1117,14 @@ def _handle_cli_spawned_daemon(
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|
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1037
1117
|
compare_sids=compare_sids,
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1038
1118
|
overlay_sid=overlay_sid,
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1039
1119
|
dims_override=dims_override,
|
|
1040
|
-
use_webview=
|
|
1120
|
+
use_webview=should_retry_webview,
|
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1041
1121
|
name=name,
|
|
1042
1122
|
base_file=base_file,
|
|
1043
1123
|
watch=watch,
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1044
1124
|
window_mode=window_mode,
|
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1045
1125
|
floating=floating,
|
|
1046
1126
|
is_remote=is_remote,
|
|
1047
|
-
webview_already_opened=
|
|
1127
|
+
webview_already_opened=early_webview_connected,
|
|
1048
1128
|
)
|
|
1049
1129
|
|
|
1050
1130
|
|
|
@@ -1075,7 +1155,15 @@ def _open_cli_spawned_view(
|
|
|
1075
1155
|
if webview_already_opened:
|
|
1076
1156
|
return
|
|
1077
1157
|
url_shell = _shell_url(port, sid, name, compare_sids=compare_sids)
|
|
1078
|
-
|
|
1158
|
+
seen_before = _server_viewer_connections_seen(port)
|
|
1159
|
+
opened, proc = _open_webview_cli_tracked(url_shell, 1400, 900)
|
|
1160
|
+
if not opened or not _wait_for_viewer_connection(port, before=seen_before):
|
|
1161
|
+
if opened:
|
|
1162
|
+
_vprint(
|
|
1163
|
+
"[ArrayView] Native window did not connect to the backend; falling back to browser",
|
|
1164
|
+
flush=True,
|
|
1165
|
+
)
|
|
1166
|
+
_terminate_native_process(proc)
|
|
1079
1167
|
_vprint("[ArrayView] Falling back to browser", flush=True)
|
|
1080
1168
|
_print_viewer_location(url)
|
|
1081
1169
|
_open_browser(
|
|
@@ -2621,7 +2709,16 @@ def _serve_daemon(
|
|
|
2621
2709
|
from arrayview._io import load_data, load_data_with_meta, list_array_keys
|
|
2622
2710
|
|
|
2623
2711
|
try:
|
|
2624
|
-
|
|
2712
|
+
# Multi-array .npz/.mat: load the first array so the session is
|
|
2713
|
+
# created, then store keys so the viewer can show a picker.
|
|
2714
|
+
_array_keys = None
|
|
2715
|
+
if (filepath.endswith(".npz") or filepath.endswith(".mat")) and not cleanup:
|
|
2716
|
+
try:
|
|
2717
|
+
_array_keys = list_array_keys(filepath)
|
|
2718
|
+
except Exception:
|
|
2719
|
+
pass
|
|
2720
|
+
_load_key = _array_keys[0]["key"] if _array_keys and len(_array_keys) > 1 else None
|
|
2721
|
+
data, spatial_meta = load_data_with_meta(filepath, key=_load_key)
|
|
2625
2722
|
if cleanup:
|
|
2626
2723
|
try:
|
|
2627
2724
|
os.unlink(filepath)
|
|
@@ -2632,15 +2729,9 @@ def _serve_daemon(
|
|
|
2632
2729
|
)
|
|
2633
2730
|
session.sid = sid
|
|
2634
2731
|
session.spatial_meta = spatial_meta
|
|
2635
|
-
|
|
2636
|
-
|
|
2637
|
-
|
|
2638
|
-
keys = list_array_keys(filepath)
|
|
2639
|
-
if len(keys) > 1:
|
|
2640
|
-
session.array_keys = keys
|
|
2641
|
-
session.array_filepath = filepath
|
|
2642
|
-
except Exception:
|
|
2643
|
-
pass
|
|
2732
|
+
if _array_keys and len(_array_keys) > 1:
|
|
2733
|
+
session.array_keys = _array_keys
|
|
2734
|
+
session.array_filepath = filepath
|
|
2644
2735
|
if spatial_meta is not None:
|
|
2645
2736
|
session.original_volume = data
|
|
2646
2737
|
if rgb:
|
|
@@ -2905,6 +2996,8 @@ def arrayview():
|
|
|
2905
2996
|
return
|
|
2906
2997
|
|
|
2907
2998
|
parser = argparse.ArgumentParser(description="Lightning Fast ND Array Viewer")
|
|
2999
|
+
from arrayview import __version__ as _av_version
|
|
3000
|
+
parser.add_argument("--version", action="version", version=f"arrayview {_av_version}")
|
|
2908
3001
|
parser.add_argument(
|
|
2909
3002
|
"files",
|
|
2910
3003
|
nargs="*",
|
|
@@ -3165,10 +3258,62 @@ def arrayview():
|
|
|
3165
3258
|
# --diagnose: print detection results and exit
|
|
3166
3259
|
if getattr(args, "diagnose", False):
|
|
3167
3260
|
import json as _json
|
|
3261
|
+
import importlib.util as _importlib_util
|
|
3168
3262
|
from ._platform import (
|
|
3169
3263
|
_find_vscode_ipc_hook,
|
|
3170
3264
|
_in_jupyter,
|
|
3171
3265
|
)
|
|
3266
|
+
from arrayview._config import CONFIG_PATH, get_window_default, load_config
|
|
3267
|
+
from arrayview._platform import detect_environment
|
|
3268
|
+
|
|
3269
|
+
_det_env = detect_environment()
|
|
3270
|
+
_config_window = get_window_default(_det_env)
|
|
3271
|
+
_in_vs = _in_vscode_terminal()
|
|
3272
|
+
_is_remote = _is_vscode_remote()
|
|
3273
|
+
_can_native = _can_native_window()
|
|
3274
|
+
_window_plan = _resolve_cli_window_mode(
|
|
3275
|
+
explicit_window=args.window,
|
|
3276
|
+
browser_flag=args.browser,
|
|
3277
|
+
config_window=_config_window,
|
|
3278
|
+
in_vscode_terminal=_in_vs,
|
|
3279
|
+
is_vscode_remote=_is_remote,
|
|
3280
|
+
can_native_window=_can_native,
|
|
3281
|
+
)
|
|
3282
|
+
|
|
3283
|
+
def _localhost_candidates() -> list[dict[str, object]]:
|
|
3284
|
+
out = []
|
|
3285
|
+
try:
|
|
3286
|
+
infos = socket.getaddrinfo(
|
|
3287
|
+
_LOOPBACK_HOST,
|
|
3288
|
+
args.port,
|
|
3289
|
+
type=socket.SOCK_STREAM,
|
|
3290
|
+
)
|
|
3291
|
+
except Exception as exc:
|
|
3292
|
+
return [{"error": str(exc)}]
|
|
3293
|
+
for family, socktype, proto, _canon, sockaddr in infos:
|
|
3294
|
+
out.append(
|
|
3295
|
+
{
|
|
3296
|
+
"family": getattr(socket.AddressFamily(family), "name", str(family)),
|
|
3297
|
+
"socktype": socktype,
|
|
3298
|
+
"proto": proto,
|
|
3299
|
+
"sockaddr": str(sockaddr),
|
|
3300
|
+
}
|
|
3301
|
+
)
|
|
3302
|
+
return out
|
|
3303
|
+
|
|
3304
|
+
def _bind_probe(port: int) -> dict[str, object]:
|
|
3305
|
+
try:
|
|
3306
|
+
sock = _make_loopback_socket(port)
|
|
3307
|
+
except Exception as exc:
|
|
3308
|
+
return {"ok": False, "error": str(exc)}
|
|
3309
|
+
try:
|
|
3310
|
+
return {
|
|
3311
|
+
"ok": True,
|
|
3312
|
+
"family": getattr(socket.AddressFamily(sock.family), "name", str(sock.family)),
|
|
3313
|
+
"sockname": str(sock.getsockname()),
|
|
3314
|
+
}
|
|
3315
|
+
finally:
|
|
3316
|
+
sock.close()
|
|
3172
3317
|
|
|
3173
3318
|
diag: dict = {
|
|
3174
3319
|
"env": {
|
|
@@ -3182,28 +3327,40 @@ def arrayview():
|
|
|
3182
3327
|
"WAYLAND_DISPLAY": os.environ.get("WAYLAND_DISPLAY"),
|
|
3183
3328
|
},
|
|
3184
3329
|
"detection": {
|
|
3185
|
-
"in_vscode_terminal":
|
|
3186
|
-
"is_vscode_remote":
|
|
3330
|
+
"in_vscode_terminal": _in_vs,
|
|
3331
|
+
"is_vscode_remote": _is_remote,
|
|
3187
3332
|
"in_vscode_tunnel": _in_vscode_tunnel(),
|
|
3188
|
-
"can_native_window":
|
|
3333
|
+
"can_native_window": _can_native,
|
|
3189
3334
|
"in_jupyter": _in_jupyter(),
|
|
3190
3335
|
"vscode_ipc_hook_recovered": _find_vscode_ipc_hook(),
|
|
3191
3336
|
},
|
|
3337
|
+
"launch_plan": {
|
|
3338
|
+
**_window_plan,
|
|
3339
|
+
"port": args.port,
|
|
3340
|
+
"port_in_use": _port_in_use(args.port),
|
|
3341
|
+
"arrayview_server_alive": _server_alive(args.port),
|
|
3342
|
+
},
|
|
3343
|
+
"loopback": {
|
|
3344
|
+
"host": _LOOPBACK_HOST,
|
|
3345
|
+
"getaddrinfo": _localhost_candidates(),
|
|
3346
|
+
"bind_probe": _bind_probe(0),
|
|
3347
|
+
},
|
|
3348
|
+
"native_dependencies": {
|
|
3349
|
+
"qtpy": _importlib_util.find_spec("qtpy") is not None,
|
|
3350
|
+
"gi": _importlib_util.find_spec("gi") is not None,
|
|
3351
|
+
"webview": _importlib_util.find_spec("webview") is not None,
|
|
3352
|
+
},
|
|
3192
3353
|
"pid": os.getpid(),
|
|
3193
3354
|
"ppid": os.getppid(),
|
|
3194
3355
|
"platform": sys.platform,
|
|
3195
3356
|
"python": sys.executable,
|
|
3196
3357
|
}
|
|
3197
|
-
from arrayview._config import CONFIG_PATH, get_window_default, load_config
|
|
3198
|
-
from arrayview._platform import detect_environment
|
|
3199
|
-
|
|
3200
|
-
_det_env = detect_environment()
|
|
3201
3358
|
diag["config"] = {
|
|
3202
3359
|
"detected_environment": _det_env,
|
|
3203
3360
|
"config_file": CONFIG_PATH,
|
|
3204
3361
|
"config_contents": load_config() or None,
|
|
3205
3362
|
"ARRAYVIEW_WINDOW": os.environ.get("ARRAYVIEW_WINDOW") or None,
|
|
3206
|
-
"resolved_window_pref":
|
|
3363
|
+
"resolved_window_pref": _config_window,
|
|
3207
3364
|
}
|
|
3208
3365
|
print(_json.dumps(diag, indent=2))
|
|
3209
3366
|
return
|
arrayview/_server.py
CHANGED
|
@@ -20,6 +20,7 @@ from arrayview._session import (
|
|
|
20
20
|
SESSIONS,
|
|
21
21
|
COLORMAPS,
|
|
22
22
|
)
|
|
23
|
+
from arrayview import __version__ as _av_version
|
|
23
24
|
import arrayview._session as _session_mod # for mutable VIEWER_SOCKETS
|
|
24
25
|
|
|
25
26
|
from arrayview._render import (
|
|
@@ -152,6 +153,7 @@ def ping():
|
|
|
152
153
|
"pid": os.getpid(),
|
|
153
154
|
"hostname": socket.gethostname(),
|
|
154
155
|
"viewer_sockets": _session_mod.VIEWER_SOCKETS,
|
|
156
|
+
"viewer_connections_seen": _session_mod.VIEWER_CONNECTIONS_SEEN,
|
|
155
157
|
}
|
|
156
158
|
|
|
157
159
|
|
|
@@ -194,6 +196,7 @@ def get_ui(sid: str = None):
|
|
|
194
196
|
.replace("__DEFAULT_THEME_IDX__", str(_default_theme_idx))
|
|
195
197
|
.replace("__DEFAULT_ROUNDED_PANES__", _default_rounded_panes)
|
|
196
198
|
.replace("__BODY_CLASS__", "av-loading" if sid else "")
|
|
199
|
+
.replace("__ARRAYVIEW_VERSION__", _av_version)
|
|
197
200
|
)
|
|
198
201
|
headers = {"Cache-Control": "no-store"}
|
|
199
202
|
return HTMLResponse(content=html, headers=headers)
|
arrayview/_stdio_server.py
CHANGED
|
@@ -23,6 +23,7 @@ import uuid
|
|
|
23
23
|
|
|
24
24
|
import numpy as np
|
|
25
25
|
|
|
26
|
+
from arrayview import __version__ as _av_version
|
|
26
27
|
from arrayview._analysis import (
|
|
27
28
|
_build_metadata,
|
|
28
29
|
_lebesgue_slice,
|
|
@@ -686,6 +687,7 @@ def _handle_get_viewer_html(msg: dict) -> None:
|
|
|
686
687
|
.replace("__DEFAULT_THEME_IDX__", str(_default_theme_idx))
|
|
687
688
|
.replace("__DEFAULT_ROUNDED_PANES__", _default_rounded_panes)
|
|
688
689
|
.replace("__BODY_CLASS__", "av-loading" if sid else "")
|
|
690
|
+
.replace("__ARRAYVIEW_VERSION__", _av_version)
|
|
689
691
|
)
|
|
690
692
|
|
|
691
693
|
_write_json({"html": html})
|