arekit 0.23.1__py3-none-any.whl → 0.25.0__py3-none-any.whl

arekit/contrib/utils/pipelines/opinion_collections.py

@@ -1,4 +1,4 @@
-import collections
+from collections.abc import Iterable
 
 from arekit.common.labels.scaler.base import BaseLabelScaler
 from arekit.common.linkage.base import LinkedDataWrapper
@@ -14,11 +14,11 @@ def __create_labeled_opinion(item, label):
     assert(isinstance(item, Opinion))
     return Opinion(source_value=item.SourceValue,
                    target_value=item.TargetValue,
-                   sentiment=label)
+                   label=label)
 
 
 def __linkages_to_opinions(linkages_iter, labels_helper, label_calc_mode):
-    assert(isinstance(linkages_iter, collections.Iterable))
+    assert(isinstance(linkages_iter, Iterable))
 
     for linkage in linkages_iter:
         assert(isinstance(linkage, LinkedDataWrapper))
@@ -31,7 +31,7 @@ def __linkages_to_opinions(linkages_iter, labels_helper, label_calc_mode):
 
 
 def __fill_opinion_collection(opinions_iter, collection, supported_labels):
-    assert(isinstance(opinions_iter, collections.Iterable))
+    assert(isinstance(opinions_iter, Iterable))
     assert(isinstance(collection, OpinionCollection))
     assert(isinstance(supported_labels, set) or supported_labels is None)
 
@@ -39,7 +39,7 @@ def __fill_opinion_collection(opinions_iter, collection, supported_labels):
         assert(isinstance(opinion, Opinion))
 
         if supported_labels is not None:
-            if opinion.Sentiment not in supported_labels:
+            if opinion.Label not in supported_labels:
                 continue
 
         if collection.has_synonymous_opinion(opinion):

arekit/contrib/utils/pipelines/text_opinion/annot/algo_based.py

@@ -1,5 +1,5 @@
-from arekit.common.news.parsed.providers.text_opinion_pairs import TextOpinionPairsProvider
-from arekit.common.news.parsed.service import ParsedNewsService
+from arekit.common.docs.parsed.providers.text_opinion_pairs import TextOpinionPairsProvider
+from arekit.common.docs.parsed.service import ParsedDocumentService
 from arekit.common.opinions.annot.algo_based import AlgorithmBasedOpinionAnnotator
 
 
@@ -21,14 +21,14 @@ class AlgorithmBasedTextOpinionAnnotator(AlgorithmBasedOpinionAnnotator):
             get_doc_existed_opinions_func=get_doc_existed_opinions_func)
         self.__value_to_group_id_func = value_to_group_id_func
 
-    def __create_service(self, parsed_news):
-        return ParsedNewsService(parsed_news=parsed_news, providers=[
+    def __create_service(self, parsed_doc):
+        return ParsedDocumentService(parsed_doc=parsed_doc, providers=[
             TextOpinionPairsProvider(self.__value_to_group_id_func)
         ])
 
-    def annotate_collection(self, parsed_news):
-        service = self.__create_service(parsed_news)
+    def annotate_collection(self, parsed_doc):
+        service = self.__create_service(parsed_doc)
         topp = service.get_provider(TextOpinionPairsProvider.NAME)
-        for opinion in super(AlgorithmBasedTextOpinionAnnotator, self).annotate_collection(parsed_news):
+        for opinion in super(AlgorithmBasedTextOpinionAnnotator, self).annotate_collection(parsed_doc):
             for text_opinion in topp.iter_from_opinion(opinion):
                 yield text_opinion

arekit/contrib/utils/pipelines/text_opinion/extraction.py

@@ -1,39 +1,45 @@
+from arekit.common.linkage.meta import MetaEmptyLinkedDataWrapper
 from arekit.common.linkage.text_opinions import TextOpinionsLinkage
-from arekit.common.news.parsed.base import ParsedNews
-from arekit.common.news.parsed.providers.entity_service import EntityServiceProvider
-from arekit.common.news.parsed.service import ParsedNewsService
-from arekit.common.news.parser import NewsParser
-from arekit.common.pipeline.base import BasePipeline
+from arekit.common.docs.parsed.base import ParsedDocument
+from arekit.common.docs.parsed.providers.entity_service import EntityServiceProvider
+from arekit.common.docs.parsed.service import ParsedDocumentService
+from arekit.common.docs.parser import DocumentParsers
 from arekit.common.pipeline.items.flatten import FlattenIterPipelineItem
 from arekit.common.pipeline.items.map import MapPipelineItem
 from arekit.common.pipeline.items.map_nested import MapNestedPipelineItem
-from arekit.common.text.parser import BaseTextParser
 from arekit.common.text_opinions.base import TextOpinion
 from arekit.contrib.utils.pipelines.text_opinion.filters.base import TextOpinionFilter
 from arekit.contrib.utils.pipelines.text_opinion.filters.limitation import FrameworkLimitationsTextOpinionFilter
 
 
-def __iter_text_opinion_linkages(parsed_news, annotators, text_opinion_filters):
+def __iter_text_opinion_linkages(parsed_doc, annotators, entity_index_func,
+                                 text_opinion_filters, use_meta):
+    """ use_meta: bool
+            this is mainly for tqdm and other console parameters to stay up-to-date
+            with the state in the case we do not have that much output results
+            across multiple amount of documents.
+    """
     assert(isinstance(annotators, list))
-    assert(isinstance(parsed_news, ParsedNews))
+    assert(isinstance(parsed_doc, ParsedDocument))
     assert(isinstance(text_opinion_filters, list))
+    assert(isinstance(use_meta, bool))
 
     def __to_id(text_opinion):
         return "{}_{}".format(text_opinion.SourceId, text_opinion.TargetId)
 
-    service = ParsedNewsService(parsed_news=parsed_news, providers=[EntityServiceProvider(None)])
+    service = ParsedDocumentService(parsed_doc=parsed_doc, providers=[EntityServiceProvider(entity_index_func)])
     esp = service.get_provider(EntityServiceProvider.NAME)
 
     predefined = set()
 
     for annotator in annotators:
-        for text_opinion in annotator.annotate_collection(parsed_news=parsed_news):
+        for text_opinion in annotator.annotate_collection(parsed_doc=parsed_doc):
             assert(isinstance(text_opinion, TextOpinion))
 
             passed = True
             for f in text_opinion_filters:
                 assert(isinstance(f, TextOpinionFilter))
-                if not f.filter(text_opinion=text_opinion, parsed_news=parsed_news, entity_service_provider=esp):
+                if not f.filter(text_opinion=text_opinion, parsed_doc=parsed_doc, entity_service_provider=esp):
                     passed = False
                     break
 
@@ -51,28 +57,34 @@ def __iter_text_opinion_linkages(parsed_news, annotators, text_opinion_filters):
             text_opinion_linkage.set_tag(service)
             yield text_opinion_linkage
 
+    # This is the case to consider the end of the document.
+    if use_meta:
+        yield MetaEmptyLinkedDataWrapper(doc_id=parsed_doc.RelatedDocID)
 
-def text_opinion_extraction_pipeline(text_parser, get_doc_by_id_func, annotators, text_opinion_filters=None):
-    assert(isinstance(text_parser, BaseTextParser))
+
+def text_opinion_extraction_pipeline(pipeline_items, get_doc_by_id_func, annotators, entity_index_func,
+                                     text_opinion_filters=None, use_meta_between_docs=True):
     assert(callable(get_doc_by_id_func))
     assert(isinstance(annotators, list))
     assert(isinstance(text_opinion_filters, list) or text_opinion_filters is None)
+    assert(isinstance(use_meta_between_docs, bool))
 
     extra_filters = [] if text_opinion_filters is None else text_opinion_filters
     actual_text_opinion_filters = [FrameworkLimitationsTextOpinionFilter()] + extra_filters
 
-    return BasePipeline([
-        # (doc_id) -> (news)
+    return [
+        # (doc_id) -> (doc)
         MapPipelineItem(map_func=lambda doc_id: get_doc_by_id_func(doc_id)),
 
-        # (news, ppl_ctx) -> (parsed_news)
-        MapNestedPipelineItem(map_func=lambda news, ppl_ctx: NewsParser.parse(
-            news=news, text_parser=text_parser, parent_ppl_ctx=ppl_ctx)),
+        # (doc, ppl_ctx) -> (parsed_doc)
+        MapNestedPipelineItem(map_func=lambda doc, ppl_ctx: DocumentParsers.parse(
+            doc=doc, pipeline_items=pipeline_items, parent_ppl_ctx=ppl_ctx)),
 
-        # (parsed_news) -> (text_opinions)
-        MapPipelineItem(map_func=lambda parsed_news: __iter_text_opinion_linkages(
-            annotators=annotators, parsed_news=parsed_news, text_opinion_filters=actual_text_opinion_filters)),
+        # (parsed_doc) -> (text_opinions)
+        MapPipelineItem(map_func=lambda parsed_doc: __iter_text_opinion_linkages(
+            annotators=annotators, parsed_doc=parsed_doc, entity_index_func=entity_index_func,
+            text_opinion_filters=actual_text_opinion_filters, use_meta=use_meta_between_docs)),
 
         # linkages[] -> linkages
         FlattenIterPipelineItem()
-    ])
+    ]

arekit/contrib/utils/pipelines/text_opinion/filters/base.py

@@ -1,4 +1,4 @@
 class TextOpinionFilter(object):
 
-    def filter(self, text_opinion, parsed_news, entity_service_provider):
+    def filter(self, text_opinion, parsed_doc, entity_service_provider):
         raise NotImplementedError()

arekit/contrib/utils/pipelines/text_opinion/filters/distance_based.py

@@ -8,7 +8,7 @@ class DistanceLimitedTextOpinionFilter(TextOpinionFilter):
         super(DistanceLimitedTextOpinionFilter, self).__init__()
         self.__terms_per_context = terms_per_context
 
-    def filter(self, text_opinion, parsed_news, entity_service_provider):
+    def filter(self, text_opinion, parsed_doc, entity_service_provider):
 
         return InputSampleBase.check_ability_to_create_sample(
             entity_service=entity_service_provider,

arekit/contrib/utils/pipelines/text_opinion/filters/entity_based.py

@@ -1,5 +1,5 @@
 from arekit.common.entities.types import OpinionEntityType
-from arekit.common.news.parsed.base import ParsedNews
+from arekit.common.docs.parsed.base import ParsedDocument
 from arekit.common.text_opinions.base import TextOpinion
 
 from arekit.contrib.utils.entities.filter import EntityFilter
@@ -13,9 +13,9 @@ class EntityBasedTextOpinionFilter(TextOpinionFilter):
         assert(isinstance(entity_filter, EntityFilter) or entity_filter is None)
         self.__entity_filter = entity_filter
 
-    def filter(self, text_opinion, parsed_news, entity_service_provider):
+    def filter(self, text_opinion, parsed_doc, entity_service_provider):
         assert(isinstance(text_opinion, TextOpinion))
-        assert(isinstance(parsed_news, ParsedNews))
+        assert(isinstance(parsed_doc, ParsedDocument))
 
         if self.__entity_filter is not None:
             e_source = entity_service_provider._doc_entities[text_opinion.SourceId]

arekit/contrib/utils/pipelines/text_opinion/filters/limitation.py

@@ -1,5 +1,5 @@
-from arekit.common.news.parsed.base import ParsedNews
-from arekit.common.news.parsed.term_position import TermPositionTypes
+from arekit.common.docs.parsed.base import ParsedDocument
+from arekit.common.docs.parsed.term_position import TermPositionTypes
 from arekit.common.text_opinions.base import TextOpinion
 from arekit.contrib.utils.pipelines.text_opinion.filters.base import TextOpinionFilter
 
@@ -10,9 +10,9 @@ class FrameworkLimitationsTextOpinionFilter(TextOpinionFilter):
         It is require to hide and provide known limitations.
     """
 
-    def filter(self, text_opinion, parsed_news, entity_service_provider):
+    def filter(self, text_opinion, parsed_doc, entity_service_provider):
         assert(isinstance(text_opinion, TextOpinion))
-        assert(isinstance(parsed_news, ParsedNews))
+        assert(isinstance(parsed_doc, ParsedDocument))
 
         s_ind = entity_service_provider.get_entity_position(
             text_opinion.SourceId, position_type=TermPositionTypes.SentenceIndex)

arekit/contrib/utils/serializer.py

@@ -1,17 +1,13 @@
-import collections
 import logging
 
-from arekit.common.data import const
+from collections.abc import Iterable
 
 from arekit.common.data.input.providers.columns.sample import SampleColumnsProvider
 from arekit.common.data.input.providers.rows.base import BaseRowProvider
 from arekit.common.data.input.repositories.base import BaseInputRepository
 from arekit.common.data.input.repositories.sample import BaseInputSamplesRepository
 from arekit.common.data.storages.base import BaseRowsStorage
-from arekit.common.pipeline.base import BasePipeline
 from arekit.contrib.utils.data.contents.opinions import InputTextOpinionProvider
-from arekit.contrib.utils.data.readers.csv_pd import PandasCsvReader
-from arekit.contrib.utils.data.service.balance import PandasBasedStorageBalancing
 
 logger = logging.getLogger(__name__)
 logging.basicConfig(level=logging.INFO)
@@ -30,11 +26,10 @@ class InputDataSerializationHelper(object):
             storage=storage)
 
     @staticmethod
-    def fill_and_write(pipeline, repo, target, writer, doc_ids_iter, desc="", do_balance=False):
-        assert(isinstance(pipeline, BasePipeline))
-        assert(isinstance(doc_ids_iter, collections.Iterable))
+    def fill_and_write(pipeline, repo, target, writer, doc_ids_iter, desc=""):
+        assert(isinstance(pipeline, list))
+        assert(isinstance(doc_ids_iter, Iterable))
         assert(isinstance(repo, BaseInputRepository))
-        assert(isinstance(do_balance, bool))
 
         doc_ids = list(doc_ids_iter)
 
@@ -45,17 +40,3 @@ class InputDataSerializationHelper(object):
                       target=target)
 
         repo.push(writer=writer, target=target)
-
-        if do_balance:
-
-            # We perform a complete and clean data reading from scratch.
-            reader = PandasCsvReader()
-            balanced_storage = PandasBasedStorageBalancing.create_balanced_from(
-                storage=reader.read(target=target), column_name=const.LABEL, free_origin=True)
-
-            # Initializing the new repository instance.
-            repo = BaseInputSamplesRepository(columns_provider=repo._columns_provider,
-                                              rows_provider=repo._rows_provider,
-                                              storage=balanced_storage)
-
-            repo.push(writer=writer, target=target)

arekit-0.25.0.dist-info/METADATA

@@ -0,0 +1,82 @@
+Metadata-Version: 2.1
+Name: arekit
+Version: 0.25.0
+Summary: Document level Attitude and Relation Extraction toolkit (AREkit) for sampling and prompting mass-media news into datasets for ML-model training
+Home-page: https://github.com/nicolay-r/AREkit
+Author: Nicolay Rusnachenko
+Author-email: rusnicolay@gmail.com
+License: MIT License
+Keywords: natural language processing,relation extraction,sentiment analysis
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3.6
+Classifier: Topic :: Software Development :: Libraries :: Python Modules
+Classifier: Topic :: Scientific/Engineering :: Information Analysis
+Classifier: Topic :: Text Processing :: Linguistic
+Requires-Python: >=3.6
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: tqdm
+Requires-Dist: enum34==1.1.10
+Requires-Dist: numpy>=1.14.5
+Requires-Dist: pymystem3==0.2.0
+
+# AREkit 0.25.0
+
+![](https://img.shields.io/badge/Python-3.9+-brightgreen.svg)
+
+<p align="center">
+    <img src="logo.png"/>
+</p>
+
+**AREkit** (Attitude and Relation Extraction Toolkit) --
+is a python toolkit, devoted to document level Attitude and Relation Extraction between text objects from mass-media news. 
+
+## Description
+
+
+This toolkit aims at memory-effective data processing in Relation Extraction (RE) related tasks.
+
+<p align="center">
+    <img src="docs/arekit-pipeline-concept.png"/>
+</p>
+
+> Figure: AREkit pipelines design. More on 
+> **[ARElight: Context Sampling of Large Texts for Deep Learning Relation Extraction](https://link.springer.com/chapter/10.1007/978-3-031-56069-9_23)** paper
+
+In particular, this framework serves the following features: 
+* ➿ [pipelines](https://github.com/nicolay-r/AREkit/wiki/Pipelines:-Text-Opinion-Annotation) and iterators for handling large-scale collections serialization without out-of-memory issues.
+* 🔗 EL (entity-linking) API support for objects, 
+* ➰ avoidance of cyclic connections,
+* :straight_ruler: distance consideration between relation participants (in `terms` or `sentences`),
+* 📑 relations annotations and filtering rules,
+* *️⃣ entities formatting or masking, and more.
+
+The core functionality includes: 
+* API for document presentation with EL (Entity Linking, i.e. Object Synonymy) support 
+for sentence level relations preparation (dubbed as contexts);
+* API for contexts extraction;
+* Relations transferring from sentence-level onto document-level, and more.
+
+## Installation 
+
+```bash
+pip install git+https://github.com/nicolay-r/AREkit.git@0.25.0-rc
+```
+
+## Usage
+
+Please follow the **[tutorial section on project Wiki](https://github.com/nicolay-r/AREkit/wiki/Tutorials)** for mode details.
+
+## How to cite
+A great research is also accompanied by the faithful reference. 
+if you use or extend our work, please cite as follows:
+
+```bibtex
+@inproceedings{rusnachenko2024arelight,
+  title={ARElight: Context Sampling of Large Texts for Deep Learning Relation Extraction},
+  author={Rusnachenko, Nicolay and Liang, Huizhi and Kolomeets, Maxim and Shi, Lei},
+  booktitle={European Conference on Information Retrieval},
+  year={2024},
+  organization={Springer}
+}
+```

arekit-0.25.0.dist-info/RECORD

@@ -0,0 +1,259 @@
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+arekit/common/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+arekit/common/bound.py,sha256=lPpHY6ct_CU9e4qXeYjhJfWbTj6Sb_NVtZ1CJheQPNE,1402
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+arekit/common/context/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+arekit/common/context/terms_mapper.py,sha256=QA02Cv7D2JKTlXkez_0w0J8HuvNziNF2vrqLgy4Bwc8,1447
+arekit/common/context/token.py,sha256=CpWAlvprUnJfCtYvO8lwdfU_ofSKAOGOudXTwppyzSk,459
+arekit/common/data/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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