ararpy 0.1.18__py3-none-any.whl → 0.1.20__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- ararpy/__init__.py +4 -2
- ararpy/calc/age.py +2 -1
- ararpy/calc/arr.py +16 -6
- ararpy/calc/corr.py +9 -7
- ararpy/calc/jvalue.py +1 -1
- ararpy/calc/plot.py +5 -2
- ararpy/files/calc_file.py +2 -5
- ararpy/files/raw_file.py +3 -4
- ararpy/files/xls.py +1 -2
- ararpy/smp/basic.py +119 -70
- ararpy/smp/corr.py +69 -51
- ararpy/smp/export.py +223 -250
- ararpy/smp/initial.py +49 -18
- ararpy/smp/plots.py +129 -92
- ararpy/smp/sample.py +56 -17
- ararpy/smp/style.py +23 -16
- {ararpy-0.1.18.dist-info → ararpy-0.1.20.dist-info}/METADATA +1 -1
- {ararpy-0.1.18.dist-info → ararpy-0.1.20.dist-info}/RECORD +21 -21
- {ararpy-0.1.18.dist-info → ararpy-0.1.20.dist-info}/WHEEL +1 -1
- {ararpy-0.1.18.dist-info → ararpy-0.1.20.dist-info}/licenses/LICENSE +0 -0
- {ararpy-0.1.18.dist-info → ararpy-0.1.20.dist-info}/top_level.txt +0 -0
ararpy/smp/sample.py
CHANGED
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@@ -54,7 +54,21 @@ PUBLISH_TABLE_HEADERS = [
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'Sequence', '', # 0-1
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'\u00B3\u2076Ar[a]', '\u00B3\u2077Ar[Ca]', '\u00B3\u2078Ar[Cl]', # 2-4
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'\u00B3\u2079Ar[K]', '\u2074\u2070Ar[r]', # 5-6
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'Apparent Age', '1\u03C3', '\u2074\
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'Apparent Age', '1\u03C3', '\u2074\u2070Ar[r]%', '\u00B3\u2079Ar[K]%', # 7-10
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'Ca/K', '1\u03C3', # 11-12
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]
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PUBLISH_TABLE_HEADERS_AIR = [
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'Sequence', '', # 0-1
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'\u00B3\u2076Ar[a]', '\u00B3\u2077Ar[Ca]', '\u00B3\u2078Ar[Cl]', # 2-4
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'\u00B3\u2079Ar[K]', '\u2074\u2070Ar[r]', # 5-6
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'MDF', '1\u03C3', '\u2074\u2070Ar[r]%', '\u00B3\u2076Ar%', # 7-10
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'Ca/K', '1\u03C3', # 11-12
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]
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PUBLISH_TABLE_HEADERS_STD = [
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'Sequence', '', # 0-1
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'\u00B3\u2076Ar[a]', '\u00B3\u2077Ar[Ca]', '\u00B3\u2078Ar[Cl]', # 2-4
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'\u00B3\u2079Ar[K]', '\u2074\u2070Ar[r]', # 5-6
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'J', '1\u03C3', '\u2074\u2070Ar[r]%', '\u00B3\u2076Ar%', # 7-10
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'Ca/K', '1\u03C3', # 11-12
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]
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SPECTRUM_TABLE_HEADERS = [
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@@ -63,6 +77,18 @@ SPECTRUM_TABLE_HEADERS = [
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'Apparent Age', '1\u03C3', '1\u03C3', '1\u03C3', # 4-7
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'\u2074\u2070Ar[r]%', '\u00B3\u2079Ar[K]%', # 8-9
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]
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SPECTRUM_TABLE_HEADERS_AIR = [
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'Sequence', '', # 0-1
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'\u2074\u2070Ar/\u00B3\u2076Ar', '1\u03C3', # 2-3
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'MDF', '1\u03C3', '1\u03C3', '1\u03C3', # 4-7
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'\u2074\u2070Ar[r]%', '\u00B3\u2076Ar%', # 8-9
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]
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SPECTRUM_TABLE_HEADERS_STD = [
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'Sequence', '', # 0-1
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'\u2074\u2070Ar/\u00B3\u2076Ar', '1\u03C3', # 2-3
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'J', '1\u03C3', '1\u03C3', '1\u03C3', # 4-7
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'\u2074\u2070Ar[r]%', '\u00B3\u2076Ar%', # 8-9
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]
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ISOCHRON_TABLE_HEADERS = [
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'Sequence', '', 'Mark', # 0-2
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'\u00B3\u2079Ar[K]/\u00B3\u2076Ar[a]', '1\u03C3', # 3-4
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@@ -108,16 +134,16 @@ TOTAL_PARAMS_HEADERS = [
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'Decay Activity \u2074\u2070K(\u03B2<sup>-</sup>)', '%1\u03C3', # 54-55
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'Decay Activity \u2074\u2070K(\u03B2<sup>+</sup>)', '%1\u03C3', # 56-57
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'\u00B3\u2076Cl/\u00B3\u2078Cl Productivity', '%1\u03C3', # 58-59
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'Std Name', 'Std Age', '1\u03C3', '\u2074\u2070Ar%', '1\u03C3', 'K%', '1\u03C3',
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'\u2074\u2070Ar<sup>*</sup>/K', '1\u03C3', #
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'Std Name', 'Std Age', '1\u03C3', '\u2074\u2070Ar%', '1\u03C3', 'K%', '1\u03C3', # 60-66
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'\u2074\u2070Ar<sup>*</sup>/K', '1\u03C3', # 67-68
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'J', '%1\u03C3', 'MDF', '%1\u03C3', # 69-72
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'Mass \u00B3\u2076Ar', '%1\u03C3', 'Mass \u00B3\u2077Ar', '%1\u03C3',
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'Mass \u00B3\u2078Ar', '%1\u03C3', 'Mass \u00B3\u2079Ar', '%1\u03C3',
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'Mass \u2074\u2070', '%1\u03C3', 'K Mass', '%1\u03C3', #
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'Mass \u00B3\u2076Ar', '%1\u03C3', 'Mass \u00B3\u2077Ar', '%1\u03C3', # 73-76
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'Mass \u00B3\u2078Ar', '%1\u03C3', 'Mass \u00B3\u2079Ar', '%1\u03C3', # 77-80
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'Mass \u2074\u2070', '%1\u03C3', 'K Mass', '%1\u03C3', # 81-84
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'No', '%1\u03C3', 'Year', '%1\u03C3', '\u2074\u2070K/K', '%1\u03C3',
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'\u00B3\
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'\u2074\u2070Ar/\u00B3\u2076Ar air', '%1\u03C3',
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'\u00B3\u2078Ar/\u00B3\u2076Ar air', '%1\u03C3', #
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'\u00B3\u2075Cl/\u00B3\u2077Cl', '%1\u03C3', 'HCl/Cl', '%1\u03C3', # 85-94
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'\u2074\u2070Ar/\u00B3\u2076Ar air', '%1\u03C3', # 95-96
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'\u00B3\u2078Ar/\u00B3\u2076Ar air', '%1\u03C3', # 97-98
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'Isochron Fitting', 'Convergence', 'Iteration', 'Discrimination', # 99-102
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'Not Zero', 'Corr Blank', 'Corr Discr', 'Corr \u00B3\u2077Ar Decay', # 103-106
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'Corr \u00B3\u2079Ar Decay', # 107
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@@ -259,19 +285,26 @@ TOTAL_PARAMS_SHORT_HEADERS = [
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'40Gain', '%1s', # 136-137
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]
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DEFAULT_PLOT_STYLES = {
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DEFAULT_PLOT_STYLES = lambda sample_type, age_unit: {
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'figure_1': {
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'id': 'figure_1', 'name': 'Age Spectra'
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'id': 'figure_1', 'name': 'Age Spectra' if sample_type == "Unknown" else 'J Spectra' if sample_type == "Standard" else "MDF" if sample_type == "Air" else "Unkown Title",
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'type': 'spectra', 'attr_name': 'AgeSpectraPlot',
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'rightside_text': [],
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'title': {'id': 'title', 'show': True,
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'title': {'id': 'title', 'show': True,
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'text': 'Age Spectra' if sample_type == "Unknown" else 'J Spectra' if sample_type == "Standard" else "MDF" if sample_type == "Air" else "Unkown Title",
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'position': 'center',
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'font_size': 18, 'color': '#333333', 'opacity': 1, 'type': 'text', 'font_weight': 'bolder',
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'font_family': 'Microsoft Sans Serif', },
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'xaxis': {
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'title': {'text': 'Cumulative {sup|39}Ar Released (%)'
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'title': {'text': 'Cumulative {sup|39}Ar Released (%)' if sample_type == "Unknown" or sample_type == "Standard" else "Cumulative {sup|36}Ar Released (%)" if sample_type == "Air" else "Unkown Title",
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'type': 'text', }, 'type': 'axis',
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'min': 0, 'max': 100, 'show_splitline': False, 'ticks_inside': False, 'split_number': 5, 'interval': 10,
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},
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'yaxis': {
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'title': {
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'title': {
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'text': f'Apparent Age ({age_unit})' if sample_type == "Unknown" else 'J Values' if sample_type == "Standard" else "MDF" if sample_type == "Air" else "Unkown Title",
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'type': 'text',
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}, 'type': 'axis',
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'min': 0, 'max': 100, 'show_splitline': False, 'ticks_inside': False, 'split_number': 5, 'interval': 10,
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},
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'set1': {'id': 'Points Set 1', 'type': 'set', },
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},
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}
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VERSION = '
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VERSION = '20250404'
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NAMED_DICT = {
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"unknown": {"header": SAMPLE_INTERCEPT_HEADERS.copy()},
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@@ -812,6 +845,7 @@ class Sample:
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self.SelectedSequence2 = []
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self.UnselectedSequence = []
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self.IsochronMark = []
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self.NormalizeFactor = [[], []]
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# Tables and Plots
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self.UnknownTable = Table()
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@@ -847,7 +881,10 @@ class Sample:
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# self.__version = '20240730' # change parameter table for thermo calculation
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# self.__version = '20241028' # gain correction
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# self.__version = '20250102' # gain correction to blanks
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self.__version = '20250301' #
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# self.__version = '20250301' # update sample info
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# self.__version = '20250321' # error sigma adjustment
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# self.__version = '20250328' # Experiment info
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self.__version = '20250404' # J normalization factor
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@property
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def version(self):
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@@ -929,7 +966,7 @@ class Sample:
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def show_data(self): ...
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def set_params(self, params: Union[List, str], flag: Optional[str] = None): ...
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def set_params(self, params: Union[List, str], flag: Optional[str] = None, rows: Optional[List] = None): ...
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def set_info(self, info: dict): ...
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def to_pdf(self, file_path: str, figure: str = "figure_3"): ...
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def to_excel(self, file_path: str, *args, **kwargs): ...
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class Table:
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def __init__(self, id='', name='Table', colcount=None, rowcount=None, header=None,
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ararpy/smp/style.py
CHANGED
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@@ -19,13 +19,26 @@ Sample = samples.Sample
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Table = samples.Table
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Plot = samples.Plot
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TABLEHEADER = lambda index:
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'',
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]
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TABLEHEADER = lambda sample_type, index: {
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'Unknown': ['',
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samples.SAMPLE_INTERCEPT_HEADERS, samples.BLANK_INTERCEPT_HEADERS,
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samples.CORRECTED_HEADERS, samples.DEGAS_HEADERS, samples.PUBLISH_TABLE_HEADERS,
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samples.SPECTRUM_TABLE_HEADERS, samples.ISOCHRON_TABLE_HEADERS,
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samples.TOTAL_PARAMS_HEADERS
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],
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'Standard': ['',
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samples.SAMPLE_INTERCEPT_HEADERS, samples.BLANK_INTERCEPT_HEADERS,
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samples.CORRECTED_HEADERS, samples.DEGAS_HEADERS, samples.PUBLISH_TABLE_HEADERS_STD,
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samples.SPECTRUM_TABLE_HEADERS_STD, samples.ISOCHRON_TABLE_HEADERS,
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samples.TOTAL_PARAMS_HEADERS
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],
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'Air': ['',
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samples.SAMPLE_INTERCEPT_HEADERS, samples.BLANK_INTERCEPT_HEADERS,
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samples.CORRECTED_HEADERS, samples.DEGAS_HEADERS, samples.PUBLISH_TABLE_HEADERS_AIR,
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samples.SPECTRUM_TABLE_HEADERS_AIR, samples.ISOCHRON_TABLE_HEADERS,
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samples.TOTAL_PARAMS_HEADERS
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],
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}[sample_type][index]
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# =======================
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@@ -58,13 +71,6 @@ def set_plot_style(smp: Sample):
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setattr(figure, 'title', Plot.Text())
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setattr(getattr(figure, 'title'), 'text', f"{suffix} {getattr(figure, 'name', '')}")
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age_unit = "Undefined"
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try:
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age_unit = str(smp.Info.preference['ageUnit']).capitalize()
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except:
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print(traceback.format_exc())
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smp.AgeSpectraPlot.yaxis.title.text = f"Apparent Age ({age_unit})"
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def reset_plot_scale(smp: Sample, only_figure: str = None):
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"""
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@@ -160,7 +166,8 @@ def reset_text(smp: Sample, only_figure: str = None):
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-------
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None
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"""
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default_styles = initial.get_default_plot_style(smp)
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for figure_id in list(default_styles.keys()):
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if only_figure is not None and figure_id != only_figure:
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continue
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figure = basic.get_component_byid(smp, figure_id)
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@@ -190,7 +197,7 @@ def set_table_style(sample: Sample):
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"""
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for key, comp in basic.get_components(sample).items():
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if isinstance(comp, Table):
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comp.header = TABLEHEADER(index=int(comp.id))
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comp.header = TABLEHEADER(sample_type=sample.Info.sample.type, index=int(comp.id))
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comp.set_coltypes()
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# comp.colcount = len(comp.header)
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# comp.coltypes = [{'type': 'numeric'}] * (comp.colcount)
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@@ -1,15 +1,15 @@
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ararpy/__init__.py,sha256=
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ararpy/__init__.py,sha256=V5si5FQDT72N9e7Nf_GuCgS_ZNJdcFEdGAvhIDS_E2I,6857
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ararpy/test.py,sha256=4F46-JJ1Ge12HGae0qO44Qc6kiEMHBgn2MsY_5LlHDo,3973
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ararpy/calc/__init__.py,sha256=kUjRuLE8TLuKOv3i976RnGJoEMj23QBZDu37LWs81U4,322
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ararpy/calc/age.py,sha256=
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ararpy/calc/arr.py,sha256=
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ararpy/calc/age.py,sha256=OcStt55LoYW1brs7a5_Ovv1NUSR5uZVQHDVGGmA_Pqg,5784
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ararpy/calc/arr.py,sha256=jD1Fd0Cj3xc7NqgnG4cp3VWQWxUlV0qCtPBZZokDG8o,15246
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ararpy/calc/basic.py,sha256=uJCCUFaPd9zvfkggrdbFYSGLl2pt7UJ7ENgXanzHy68,4036
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ararpy/calc/corr.py,sha256=
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ararpy/calc/corr.py,sha256=6hlBlFIM8HyN6CDuWPGqiLpVM88pZJLEuRm8vAyg9ng,18747
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ararpy/calc/err.py,sha256=63LtprqjemlIb1QGDst4Ggcv5KMSDHdlAIL-nyQs1eA,2691
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ararpy/calc/histogram.py,sha256=0GVbDdsjd91KQ1sa2B7NtZ4KGo0XpRIJapgIrzAwQUo,5777
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ararpy/calc/isochron.py,sha256=ej9G2e68k6yszonWHsLcEubh3TA7eh1upTJP_X0ttAA,5726
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ararpy/calc/jvalue.py,sha256=
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ararpy/calc/plot.py,sha256=
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ararpy/calc/jvalue.py,sha256=OL5zPYU8Pac-wOxUWPCgu3onh2n01xDnhpi2mlUsjJM,1146
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ararpy/calc/plot.py,sha256=sUqjKBdAEjFarUoSCLqf8cbUM0rEAdZhmtyXB2K7LkA,2139
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ararpy/calc/raw_funcs.py,sha256=UC01lvA6GyZ5FJv43jgoUULAFoLnZJMxeSa0BeVFCAM,2637
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ararpy/calc/regression.py,sha256=w5kni6LGqvISvlvbBZnJ3N2c5eQjgkz3bBbj0PXPyGs,40251
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ararpy/calc/spectra.py,sha256=_Q23eP9necHlaCoHf3_UfW1N3JmVZj5rcWFro8GS-CA,1995
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@@ -35,32 +35,32 @@ ararpy/examples/sample-default.smp,sha256=YNkoQGgPrsL_fXS7ZHxfRtLQWekCDqT9czS6vB
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ararpy/files/__init__.py,sha256=l5B5ZQ01WdtvjjN0aMkyAFNgpwANdM_1I0tQbqnRuEY,69
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ararpy/files/arr_file.py,sha256=KqksGlEA6nmMQofTgi7v45flscQZVtefxaNCKrV3Am4,837
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ararpy/files/basic.py,sha256=nc7Hgo_qLSkdmtKzZmd5SQ8Jy0dhW46ly4gh-oisUDs,2095
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ararpy/files/calc_file.py,sha256=
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ararpy/files/calc_file.py,sha256=nqv_VfbOzz8ejcnjNoHJafGiYldhYSOLusUGtuZ8jR0,28207
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ararpy/files/new_file.py,sha256=efblARIBROVLWS2w3-98BxLX5VZ8grRpiTkJFtf_rAk,214
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ararpy/files/raw_file.py,sha256=
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ararpy/files/xls.py,sha256=
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ararpy/files/raw_file.py,sha256=5hnZMS7r78lA0ZXrBEN5SWVurQyl0QsHOI9rJz5BQv8,22302
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ararpy/files/xls.py,sha256=DVcZ_yRnc19p-m4leGGjt-YPDpSa2udYKmGyrM0qub0,640
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ararpy/smp/EXPORT_TO_PDF_DATA_PROPERTIES.py,sha256=baDM437tu6hsPv0uYfod0TREXlPd6kvMBFT1S9ZZlkk,3024
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ararpy/smp/__init__.py,sha256=k6_fa27UJsQK7K7oC5GYlwMo6l0Xd8af3QtOrZz2XJk,478
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ararpy/smp/basic.py,sha256=
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ararpy/smp/basic.py,sha256=FjntKS61vdUFtwrBJcL2HTiTJthR288Q-DDNuFoUND4,24825
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ararpy/smp/calculation.py,sha256=LCFJWjLVLEKEQ5b7RFUIxsMahEzgLdodW4kCYXV5Z34,2919
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ararpy/smp/consts.py,sha256=XIdjdz8cYxspG2jMnoItdlUsxr3hKbNFJjMZJh1bpzw,393
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ararpy/smp/corr.py,sha256=
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ararpy/smp/corr.py,sha256=tE8nVv7DrL9ktou_HvxfYQaYwhJ3MA4l0fAXasKVph8,26499
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ararpy/smp/diffusion_funcs.py,sha256=4-PMMIZWzjk2HOYYWNgSp4GmApygp1MmOxJ2g3xrqWc,175049
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ararpy/smp/export.py,sha256=
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ararpy/smp/export.py,sha256=s89L5B1aHoCeJIjcw6nXA6NtV0j_5XXaWnOETWnomCs,115043
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ararpy/smp/info.py,sha256=iKUELm-BuUduDlJKC1d8tKKNHbwwbNmhUg2pi6bcBvA,489
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ararpy/smp/initial.py,sha256=
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ararpy/smp/initial.py,sha256=VSNku2fYD1xGkpHxMqnSJCAhSQawfsDCdqYCxtDJryQ,17196
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ararpy/smp/json.py,sha256=BTZCjVN0aj9epc700nwkYEYMKN2lHBYo-pLmtnz5oHY,2300
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ararpy/smp/plots.py,sha256=
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ararpy/smp/plots.py,sha256=rF0vrFu9dMt2Eu1EHiDfDRC9232M6dH0Unc_3qNDxLY,33579
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ararpy/smp/raw.py,sha256=51n-rrbW2FqeZHQyevuG7iObPLGvIBzTe414QDVM1FE,6523
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ararpy/smp/sample.py,sha256=
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ararpy/smp/style.py,sha256=
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ararpy/smp/sample.py,sha256=ZOrQt3Ilm6tJbQCwh_btoZOXdkCngZFHCt10Nh0UmpI,57727
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ararpy/smp/style.py,sha256=wCygwtpCflhzwmI7u08X-feYGPytOyfR98YcgJx813c,7678
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ararpy/smp/table.py,sha256=9bNAOqAIOc0nSC3LNeqjJKUYSJSM28Ji3o9VimwMU8A,6645
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ararpy/thermo/__init__.py,sha256=6VBuqTRFl403PVqOuMkVrut0nKaQsAosBmfW91X1dMg,263
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ararpy/thermo/arrhenius.py,sha256=Ass1ichHfqIAtpv8eLlgrUc1UOb3Urh1qzr1E3gLB4U,233
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ararpy/thermo/atomic_level_random_walk.py,sha256=Q97zfe2h2RaxADkoBAqd0uEiP16BFOajrTmXHMkL2EQ,25502
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ararpy/thermo/basic.py,sha256=nBGHI9uK7VdJwThwBIOcKAzdnYqPyQseFoY6s4zKizk,11504
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ararpy-0.1.
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ararpy-0.1.20.dist-info/licenses/LICENSE,sha256=cvG5t_C1qY_zUyJI7sNOa7gCArdngNPaOrfujl2LYuc,1085
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ararpy-0.1.20.dist-info/METADATA,sha256=-3UiJOtxnZz1wNj81B591579TjQq3rzQ5K5DlVvHxyA,24516
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ararpy-0.1.20.dist-info/WHEEL,sha256=CmyFI0kx5cdEMTLiONQRbGQwjIoR1aIYB7eCAQ4KPJ0,91
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ararpy-0.1.20.dist-info/top_level.txt,sha256=9iTpsPCYuRYq09yQTk9d2lqB8JtTEOmbN-IcGB-K3vY,7
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ararpy-0.1.20.dist-info/RECORD,,
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