ararpy 0.1.13__py3-none-any.whl → 0.1.15__py3-none-any.whl

ararpy/smp/initial.py

@@ -49,6 +49,12 @@ spectra_res_keys = [
 SPECTRA_RES = dict(zip(
     spectra_res_keys, [np.nan for i in spectra_res_keys])
 )
+settings_keys = [
+    'sigma_level'
+]
+SETTINGS_RES = dict(zip(
+    settings_keys, [np.nan for i in settings_keys])
+)
 
 
 # create sample instance
@@ -176,8 +182,11 @@ def initial(smp: Sample):
         reference=ArArBasic(
             name='REFERENCE', journal='JOURNAL', doi='DOI'
         ),
+        settings=copy.deepcopy(SETTINGS_RES)
     ))
 
+    smp.Info.settings.update({'sigma_level': 1})
+
     # Plots and Tables
     setattr(smp, 'UnknownTable', Table(
         id='1', name='Unknown', header=samples.SAMPLE_INTERCEPT_HEADERS,

ararpy/smp/json.py

@@ -14,6 +14,7 @@ import json
 import numpy as np
 import pandas as pd
 from .sample import Sample, Table, Plot, RawData, Sequence, ArArBasic
+from django.db.models import QuerySet
 
 
 def dumps(a):
@@ -31,6 +32,9 @@ class MyEncoder(json.JSONEncoder):
         # np.array
         if isinstance(obj, np.ndarray):
             return obj.tolist()
+        # np.array
+        if isinstance(obj, QuerySet):
+            return list(obj)
         # pd.DataFrame
         if isinstance(obj, pd.DataFrame):
             print(obj)
@@ -49,6 +53,9 @@ class MyEncoder(json.JSONEncoder):
                     'is_blank': obj.is_blank(), 'is_unknown': obj.is_unknown(),
                     'is_air': obj.is_air()})
             return obj.__dict__
+        # Error
+        if isinstance(obj, BaseException):
+            return obj.args[0]
         if not isinstance(obj, (int, str, list, dict, tuple, float)):
             print(f"Special type, {type(obj) = }, {obj = }")
         return super(MyEncoder, self).default(obj)

ararpy/smp/plots.py

@@ -434,8 +434,9 @@ def recalc_age_plateaus(sample: Sample, **kwargs):
     # Get ages and line data points for each set
     try:
         set1_res, set1_age, set1_data = \
-            get_plateau_results(sample, sample.SelectedSequence1, calc_ar40ar39(*ratio_set1, smp=sample))
+            get_plateau_results(sample, sample.SelectedSequence1, calc_ar40ar39(*ratio_set1, smp=sample), **kwargs)
     except ValueError:
+        # print(traceback.format_exc())
         pass
         # raise ValueError(f"Set 1 Plateau results calculation error.")
     else:
@@ -444,8 +445,9 @@ def recalc_age_plateaus(sample: Sample, **kwargs):
         sample.AgeSpectraPlot.text1.text = ""  # 注意和js的配合，js那边根据text是否为空判断是否重新生成文字
     try:
         set2_res, set2_age, set2_data = \
-            get_plateau_results(sample, sample.SelectedSequence2, calc_ar40ar39(*ratio_set2, smp=sample))
+            get_plateau_results(sample, sample.SelectedSequence2, calc_ar40ar39(*ratio_set2, smp=sample), **kwargs)
     except ValueError:
+        # print(traceback.format_exc())
         pass
         # raise ValueError(f"Set 2 Plateau results calculation error.")
     else:
@@ -579,7 +581,7 @@ def calc_ar40ar39(r, sr, smp):
 
 
 def get_plateau_results(sample: Sample, sequence: list, ar40rar39k: list = None,
-                        ar39k_percentage: list = None):
+                        ar39k_percentage: list = None, **kwargs):
     """
     Get initial ratio re-corrected plateau results
     Parameters
@@ -613,7 +615,7 @@ def get_plateau_results(sample: Sample, sequence: list, ar40rar39k: list = None,
         ar39k_percentage = sample.ApparentAgeValues[7]
 
     age = basic.calc_age(ar40ar39=ar40rar39k, smp=sample)[0:2]
-    plot_data = calc.spectra.get_data(*age, ar39k_percentage, indices=sequence)
+    plot_data = calc.spectra.get_data(*age, ar39k_percentage, indices=sequence, **kwargs)
     f_values = _get_partial(sequence, *ar40rar39k)
     age = _get_partial(sequence, *age)
     sum_ar39k = sum(_get_partial(sequence, ar39k_percentage)[0])

ararpy/smp/sample.py

@@ -122,9 +122,10 @@ TOTAL_PARAMS_HEADERS = [
     'Not Zero', 'Corr Blank', 'Corr Discr', 'Corr \u00B3\u2077Ar Decay',  # 103-106
     'Corr \u00B3\u2079Ar Decay',  # 107
     'Ca Degassing', 'K Degassing', 'Cl Degassing', 'Trap Degassing',  # 108-111
-    'Using Min Equation',
+    'Using Min Equation',  # 112
     # 'Recalibration', 'Using Std Age', 'Use Std Ratio',  # 112-115  to be completed
-    '', '', '',  # 112-115
+    'Apply Gain Corr to Blanks',  # 113
+    '', '',  # 114-115
     'Auto Plateau Method',  # 116 the index includes sequence name and unit
     'Initial Ratio Model',  # 117
     'Set1 initial Ratio',  # 118
@@ -235,9 +236,10 @@ TOTAL_PARAMS_SHORT_HEADERS = [
     'NotZero', 'CorrBlank', 'CorrDiscr', 'CorrAr37Decay',
     'CorrAr39Decay',  # 103-107
     'CaDegassing', 'KDegassing', 'ClDegassing', 'TrapDegassing',  # 108-111
-    'UsingMin',
+    'UsingMin',  # 112
     # 'Recalibration', 'Using Std Age', 'Use Std Ratio',  # 112-115  to be completed
-    '', '', '',  # 112-115
+    'BlankGainCorr',  # 113
+    '', '',  # 114-115
     'AutoPlateauMethod',  # 116 the index includes sequence name and unit
     'InitialRatioModel',  # 117
     'Set1InitialRatio',  # 118
@@ -741,7 +743,7 @@ DEFAULT_PLOT_STYLES = {
     },
 }
 
-VERSION = '20241028'
+VERSION = '20250301'
 
 NAMED_DICT = {
     "unknown": {"header": SAMPLE_INTERCEPT_HEADERS.copy()},
@@ -843,7 +845,9 @@ class Sample:
         # self.__version = '20230827'  # using merge smp to update arr version
         # self.__version = '20231116'  # change smp parameters
         # self.__version = '20240730'  # change parameter table for thermo calculation
-        self.__version = '20241028'  # gain correction
+        # self.__version = '20241028'  # gain correction
+        # self.__version = '20250102'  # gain correction to blanks
+        self.__version = '20250301'  # error sigma adjustment
 
     @property
     def version(self):
@@ -940,7 +944,7 @@ class Table:
         if header is None:
             header = ['']
         if data is None:
-            data = [['']]
+            data = [['' for i in range(len(header))]]
         if colcount is None:
             colcount = len(header)
         if rowcount is None:

{ararpy-0.1.13.dist-info → ararpy-0.1.15.dist-info}/METADATA

@@ -1,6 +1,6 @@
-Metadata-Version: 2.1
+Metadata-Version: 2.2
 Name: ararpy
-Version: 0.1.13
+Version: 0.1.15
 Summary: A project for Ar-Ar geochronology
 Home-page: https://github.com/wuyangchn/ararpy.git
 Author: Yang Wu
@@ -12,6 +12,14 @@ Classifier: Operating System :: OS Independent
 Requires-Python: >=3.5
 Description-Content-Type: text/markdown
 License-File: LICENSE
+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: home-page
+Dynamic: requires-python
+Dynamic: summary
 
 # ArArPy
 

{ararpy-0.1.13.dist-info → ararpy-0.1.15.dist-info}/RECORD

@@ -1,18 +1,20 @@
 ararpy/__init__.py,sha256=XKlsgklkzGfvqQkt59y-UST9aVhgCf-eXpEDiaZaynQ,6725
 ararpy/test.py,sha256=4F46-JJ1Ge12HGae0qO44Qc6kiEMHBgn2MsY_5LlHDo,3973
+ararpy/argon_diffusion_simulator/__init__.py,sha256=8VEdUP7sh17lNg6FcRVVK0JynthEsSk_qcTQtwisqU8,229
+ararpy/argon_diffusion_simulator/main.py,sha256=-EN7ndhzVslNctJSaQTn_JwumA6Cnt37yiPxuLtahXQ,25490
 ararpy/calc/__init__.py,sha256=kUjRuLE8TLuKOv3i976RnGJoEMj23QBZDu37LWs81U4,322
-ararpy/calc/age.py,sha256=CUex9UxZbYinl9ypd7o86R3VRQFzahku3gW__fBeoss,5811
+ararpy/calc/age.py,sha256=zaiy_2AgKEe1a-KfZoi6HmrLpyU_aLUuNVmSeJ_X5KQ,5820
 ararpy/calc/arr.py,sha256=w31bn6MXF8I8qPXYo5kI-TfMKCYspx1rZ5g_UpwwSd8,14939
-ararpy/calc/basic.py,sha256=0K0rbm9GpDpEZjQ1r7N-6w-dU-S3UzByOTrefLmjT0c,3231
-ararpy/calc/corr.py,sha256=wCkpUZDQ3VFxfmy0eG6ehkIuMjKRfTNfW8ozH3i1lQc,17928
+ararpy/calc/basic.py,sha256=QN__j0JrEZA-W29iPAnwT7XtR6PCuvgDptLtyTgGp_k,3236
+ararpy/calc/corr.py,sha256=i0ku_L0dV4Cex0SLZxyDHYML8lF_njA0yfIufX8DXXo,17926
 ararpy/calc/err.py,sha256=63LtprqjemlIb1QGDst4Ggcv5KMSDHdlAIL-nyQs1eA,2691
 ararpy/calc/histogram.py,sha256=0GVbDdsjd91KQ1sa2B7NtZ4KGo0XpRIJapgIrzAwQUo,5777
 ararpy/calc/isochron.py,sha256=ej9G2e68k6yszonWHsLcEubh3TA7eh1upTJP_X0ttAA,5726
 ararpy/calc/jvalue.py,sha256=zHUhJ1iYe5mPrY95mGYxoUPAp7hwu4coUgiHKiruKfM,1138
-ararpy/calc/plot.py,sha256=v-vJwciJIhKrdXKWAUZbYslez0zBrIa6awI-DopmRZg,1956
-ararpy/calc/raw_funcs.py,sha256=UNNdehMBZxrb8QpFsWXDXvDYae6y5veygI_St_hjp_U,2558
-ararpy/calc/regression.py,sha256=dpyEiU1MKSn3lzcSF3A4AcQlS01dmhNvhatJvVQ9ZrY,40207
-ararpy/calc/spectra.py,sha256=iBhuQ03PyIKHbAQSexx3fZ6ZYaxM6P_uMyWdUeeMck4,1936
+ararpy/calc/plot.py,sha256=iWxPYIaT0OmJBiho7X9wFY7m-QrvYexu6nWHp24T_VY,1962
+ararpy/calc/raw_funcs.py,sha256=UC01lvA6GyZ5FJv43jgoUULAFoLnZJMxeSa0BeVFCAM,2637
+ararpy/calc/regression.py,sha256=Xes0rvIX5a9e_gje3n6iTXYbNtRuZZMKRcADp2b-5Dw,40091
+ararpy/calc/spectra.py,sha256=_Q23eP9necHlaCoHf3_UfW1N3JmVZj5rcWFro8GS-CA,1995
 ararpy/examples/022_VU124-M11a.ahd,sha256=3m0Gd-ZObou3KsnRNFMf77QwzT1Uz3nu3vA33Sqeyng,5414
 ararpy/examples/20WHA0103.age,sha256=cT-a4d7Wt77aotx6v0G47vulY_TZIcZUcaVHB3pqTPM,380416
 ararpy/examples/22WHA0078.xls,sha256=1XAAHmIhuswwZ3toCT-qTLrYzqXNDYWGjDyCTI3xaMY,2611729
@@ -35,7 +37,7 @@ ararpy/examples/sample-default.smp,sha256=YNkoQGgPrsL_fXS7ZHxfRtLQWekCDqT9czS6vB
 ararpy/files/__init__.py,sha256=l5B5ZQ01WdtvjjN0aMkyAFNgpwANdM_1I0tQbqnRuEY,69
 ararpy/files/arr_file.py,sha256=KqksGlEA6nmMQofTgi7v45flscQZVtefxaNCKrV3Am4,837
 ararpy/files/basic.py,sha256=nc7Hgo_qLSkdmtKzZmd5SQ8Jy0dhW46ly4gh-oisUDs,2095
-ararpy/files/calc_file.py,sha256=fYPwJxazhxxHS1BCI9q7CJW-VIyJZ8UAh6Z8bO9DmLY,27864
+ararpy/files/calc_file.py,sha256=ezKtP2PFSW5W2w6cPY3p4l9VJ4uUPAjc5guHeZxxERA,28303
 ararpy/files/new_file.py,sha256=efblARIBROVLWS2w3-98BxLX5VZ8grRpiTkJFtf_rAk,214
 ararpy/files/raw_file.py,sha256=aVHlebiGpxHGj_z9mrTR-Y2JEivxa4k1MJZ1TFXyMnA,22319
 ararpy/files/xls.py,sha256=8ibT4ZRY2grK34ikKm1pDmlWFlVTgDL7vSMO6mphzrY,702
@@ -44,19 +46,19 @@ ararpy/smp/__init__.py,sha256=k6_fa27UJsQK7K7oC5GYlwMo6l0Xd8af3QtOrZz2XJk,478
 ararpy/smp/basic.py,sha256=Jufv_4zXO1-XbmwM4UUrvZsp4tRGD05ec-035u8CiEs,21533
 ararpy/smp/calculation.py,sha256=LCFJWjLVLEKEQ5b7RFUIxsMahEzgLdodW4kCYXV5Z34,2919
 ararpy/smp/consts.py,sha256=XIdjdz8cYxspG2jMnoItdlUsxr3hKbNFJjMZJh1bpzw,393
-ararpy/smp/corr.py,sha256=5dzCI92xg8kL12wA5GLx4kV7YZnwP9g3xGErKZ--bGE,24998
-ararpy/smp/diffusion_funcs.py,sha256=mYK7czYaEZqd18UBI1CjyBb6b7cnjnq7slGXAU-A7ZQ,174874
-ararpy/smp/export.py,sha256=UTC71CdkintOp5jHspzcs_rTSeI7chvwFnx-bXtrTDw,97173
+ararpy/smp/corr.py,sha256=ga3OsRSwPeLd4VV7DbOjZ3T4qlOYweUZhFfAM9MkM5s,25484
+ararpy/smp/diffusion_funcs.py,sha256=_8SchTD27CAS8SmQVDoXJscTRB7M-BqtpASEgg_izBM,175748
+ararpy/smp/export.py,sha256=4RtoDvItQ2ysWXY78gS_tDocTgSY9ftP9Vb-YKrOGQI,107646
 ararpy/smp/info.py,sha256=iKUELm-BuUduDlJKC1d8tKKNHbwwbNmhUg2pi6bcBvA,489
-ararpy/smp/initial.py,sha256=nZNrV4fv_PlNXYfqqIOOOkcQjnSOTLymVpJyJ9d_QtM,15359
-ararpy/smp/json.py,sha256=Y7xoTZczSTrvVHlhfLmpu-zoxgLw9MFn2lgRYkjgHTY,2079
-ararpy/smp/plots.py,sha256=bM4ofS12NedBUXXleEy7-xcK9C8svVuSrTXYmeiMY3k,31495
+ararpy/smp/initial.py,sha256=J30NYDpccRJ1TSP6Fl_nHSZ12J6PDMtIic-iT5fSlC4,15580
+ararpy/smp/json.py,sha256=BTZCjVN0aj9epc700nwkYEYMKN2lHBYo-pLmtnz5oHY,2300
+ararpy/smp/plots.py,sha256=jYvi4oNEdI1r4371Wh3cB6vkL-1rrzgbyClK87Uw6YM,31617
 ararpy/smp/raw.py,sha256=51n-rrbW2FqeZHQyevuG7iObPLGvIBzTe414QDVM1FE,6523
-ararpy/smp/sample.py,sha256=3POkIxVXiCkZqa4ocePC76690umMa-7zYEM-iiEF7Cc,55192
+ararpy/smp/sample.py,sha256=2aqyszY81GXzbZWRKip9BEaeYaFV32-gxmhue3gCvfs,55429
 ararpy/smp/style.py,sha256=NZwTeodhtHBBdCyjvupF64nh2B5EDdMHzlT8oE360zg,6746
 ararpy/smp/table.py,sha256=yNr4PLxbH4ezeUXpKBxLjRfq4RuYiW-G3sMWFDtjlVM,6802
-ararpy-0.1.13.dist-info/LICENSE,sha256=cvG5t_C1qY_zUyJI7sNOa7gCArdngNPaOrfujl2LYuc,1085
-ararpy-0.1.13.dist-info/METADATA,sha256=Fcxg6Sb9jDsFq2zlBT6iGPxgam-sNRFLgBapjUbzYck,24331
-ararpy-0.1.13.dist-info/WHEEL,sha256=P9jw-gEje8ByB7_hXoICnHtVCrEwMQh-630tKvQWehc,91
-ararpy-0.1.13.dist-info/top_level.txt,sha256=9iTpsPCYuRYq09yQTk9d2lqB8JtTEOmbN-IcGB-K3vY,7
-ararpy-0.1.13.dist-info/RECORD,,
+ararpy-0.1.15.dist-info/LICENSE,sha256=cvG5t_C1qY_zUyJI7sNOa7gCArdngNPaOrfujl2LYuc,1085
+ararpy-0.1.15.dist-info/METADATA,sha256=_zC9lSFdJP2rU_a6zTZlmrz231SNMTGtLR0iMHnLR1E,24513
+ararpy-0.1.15.dist-info/WHEEL,sha256=jB7zZ3N9hIM9adW7qlTAyycLYW9npaWKLRzaoVcLKcM,91
+ararpy-0.1.15.dist-info/top_level.txt,sha256=9iTpsPCYuRYq09yQTk9d2lqB8JtTEOmbN-IcGB-K3vY,7
+ararpy-0.1.15.dist-info/RECORD,,

{ararpy-0.1.13.dist-info → ararpy-0.1.15.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (75.3.0)
+Generator: setuptools (75.8.2)
 Root-Is-Purelib: true
 Tag: py3-none-any