ararpy 0.0.24__py3-none-any.whl → 0.1.11__py3-none-any.whl

ararpy/smp/sample.py

@@ -22,16 +22,22 @@ from types import MethodType
 import pandas as pd
 
 SAMPLE_INTERCEPT_HEADERS = [
-    'Sequence', '', '\u00B3\u2076Ar', '1\u03C3', '\u00B3\u2077Ar', '1\u03C3',
-    '\u00B3\u2078Ar', '1\u03C3', '\u00B3\u2079Ar', '1\u03C3', '\u2074\u2070Ar', '1\u03C3'
+    'Sequence', '',  # 0-1
+    '\u00B3\u2076Ar', '1\u03C3', '\u00B3\u2077Ar', '1\u03C3',  # 2-5
+    '\u00B3\u2078Ar', '1\u03C3', '\u00B3\u2079Ar', '1\u03C3',  # 6-9
+    '\u2074\u2070Ar', '1\u03C3',  # 10-11
 ]
 BLANK_INTERCEPT_HEADERS = [
-    'Sequence', '', '\u00B3\u2076Ar', '1\u03C3', '\u00B3\u2077Ar', '1\u03C3',
-    '\u00B3\u2078Ar', '1\u03C3', '\u00B3\u2079Ar', '1\u03C3', '\u2074\u2070Ar', '1\u03C3'
+    'Sequence', '',  # 0-1
+    '\u00B3\u2076Ar', '1\u03C3', '\u00B3\u2077Ar', '1\u03C3',  # 2-5
+    '\u00B3\u2078Ar', '1\u03C3', '\u00B3\u2079Ar', '1\u03C3',  # 6-9
+    '\u2074\u2070Ar', '1\u03C3',  # 10-11
 ]
 CORRECTED_HEADERS = [
-    'Sequence', '', '\u00B3\u2076Ar', '1\u03C3', '\u00B3\u2077Ar', '1\u03C3',
-    '\u00B3\u2078Ar', '1\u03C3', '\u00B3\u2079Ar', '1\u03C3', '\u2074\u2070Ar', '1\u03C3'
+    'Sequence', '',  # 0-1
+    '\u00B3\u2076Ar', '1\u03C3', '\u00B3\u2077Ar', '1\u03C3',  # 2-5
+    '\u00B3\u2078Ar', '1\u03C3', '\u00B3\u2079Ar', '1\u03C3',  # 6-9
+    '\u2074\u2070Ar', '1\u03C3',  # 10-11
 ]
 DEGAS_HEADERS = [
     'Sequence', '',  # 0-1
@@ -42,16 +48,20 @@ DEGAS_HEADERS = [
     '\u00B3\u2078Ar[K]', '1\u03C3', '\u00B3\u2078Ar[Ca]', '1\u03C3',  # 18-21
     '\u00B3\u2079Ar[K]', '1\u03C3', '\u00B3\u2079Ar[Ca]', '1\u03C3',  # 22-25
     '\u2074\u2070Ar[r]', '1\u03C3', '\u2074\u2070Ar[a]', '1\u03C3',  # 26-29
-    '\u2074\u2070Ar[c]', '1\u03C3', '\u2074\u2070Ar[K]', '1\u03C3'  # 29-32
+    '\u2074\u2070Ar[c]', '1\u03C3', '\u2074\u2070Ar[K]', '1\u03C3'  # 30-33
 ]
 PUBLISH_TABLE_HEADERS = [
-    'Sequence', '', '\u00B3\u2076Ar[a]', '\u00B3\u2077Ar[Ca]', '\u00B3\u2078Ar[Cl]',
-    '\u00B3\u2079Ar[K]', '\u2074\u2070Ar[r]', 'Apparent Age', '1\u03C3', '\u2074\u2070Arr%',
-    '\u00B3\u2079ArK%', 'Ca/K', '1\u03C3'
+    'Sequence', '',  # 0-1
+    '\u00B3\u2076Ar[a]', '\u00B3\u2077Ar[Ca]', '\u00B3\u2078Ar[Cl]',  # 2-4
+    '\u00B3\u2079Ar[K]', '\u2074\u2070Ar[r]',  # 5-6
+    'Apparent Age', '1\u03C3', '\u2074\u2070Arr%', '\u00B3\u2079ArK%',  # 7-10
+    'Ca/K', '1\u03C3',  # 11-12
 ]
 SPECTRUM_TABLE_HEADERS = [
-    'Sequence', '', '\u2074\u2070Ar/\u00B3\u2079Ar', '1\u03C3', 'Apparent Age',
-    '1\u03C3', '1\u03C3', '1\u03C3', '\u2074\u2070Ar[r]%', '\u00B3\u2079Ar[K]%'
+    'Sequence', '',  # 0-1
+    '\u2074\u2070Ar/\u00B3\u2079Ar', '1\u03C3',  # 2-3
+    'Apparent Age', '1\u03C3', '1\u03C3', '1\u03C3',  # 4-7
+    '\u2074\u2070Ar[r]%', '\u00B3\u2079Ar[K]%',  # 8-9
 ]
 ISOCHRON_TABLE_HEADERS = [
     'Sequence', '', 'Mark',  # 0-2
@@ -124,6 +134,9 @@ TOTAL_PARAMS_HEADERS = [
     'Isotopic Errors',  # 122
     'Parameter Errors',  # 123
     'Plot Errors',  # 124
+    'Heating Time (s)',  # 125
+    'Heating Actual Temp (C)',  # 126
+    'Heating AT 1\u03C3',  # 127
 ]
 
 SAMPLE_INTERCEPT_SHORT_HEADERS = [
@@ -229,6 +242,9 @@ TOTAL_PARAMS_SHORT_HEADERS = [
     'IsotopicErrors',  # 122
     'ParameterErrors',  # 123
     'PlotErrors',  # 124
+    'HeatingTime',  # 125
+    'HeatingActualTemp',  # 126
+    'HeatingActualTempError',  # 127
 ]
 
 DEFAULT_PLOT_STYLES = {
@@ -715,7 +731,7 @@ DEFAULT_PLOT_STYLES = {
     },
 }
 
-VERSION = '20231208'
+VERSION = '20240730'
 
 NAMED_DICT = {
     "unknown": {"header": SAMPLE_INTERCEPT_HEADERS.copy()},
@@ -815,14 +831,15 @@ class Sample:
         # self.__version = '20230724'  # change header
         # self.__version = '20230730'  # delete calcparams attribute
         # self.__version = '20230827'  # using merge smp to update arr version
-        self.__version = '20231116'  # change smp parameters
+        # self.__version = '20231116'  # change smp parameters
+        self.__version = '20240730'  # change parameter table for thermo calculation
 
     @property
     def version(self):
         return self.__version
 
     def help(self) -> str: ...
-
+    
     def name(self) -> str: ...
 
     def doi(self) -> str: ...
@@ -859,7 +876,7 @@ class Sample:
 
     def set_selection(self): ...
 
-    def update_table(self): ...
+    def update_table(self, data: list, table_id: name): ...
 
     def unknown(self) -> ArArData: ...
 
@@ -901,6 +918,8 @@ class Sample:
 
     def set_info(self, info: dict): ...
 
+    def get_comp(self, name: str):...
+
     def to_pdf(self, file_path: str, figure: str = "figure_3"): ...
 
 
@@ -1031,19 +1050,12 @@ class Plot:
                 setattr(self, k, v)
 
 
-class Info:
-    def __init__(self, id='', name='', type='Info', **kwargs):
-        self.id = id
-        self.name = name
-        self.type = type
-        for k, v in kwargs.items():
-            setattr(self, k, v)
-
-
 class Sequence:
     def __init__(self, index=None, data=None, flag=None, name=None, datetime=None,
                  type_str=None, results=None, coefficients=None, fitting_method=None,
-                 is_estimated=False, **kwargs):
+                 is_estimated=False, options=None, **kwargs):
+        if options is None:
+            options = {}
         self.index = index
         if name is None or not isinstance(name, str):
             name = ""
@@ -1065,6 +1077,8 @@ class Sequence:
         self.coefficients = coefficients
         self.fitting_method = fitting_method
         self.is_estimated = is_estimated
+        self.is_removed = False
+        self.options = options
 
         for k, v in kwargs.items():
             if hasattr(self, k) and type(getattr(self, k)) is MethodType:
@@ -1109,8 +1123,8 @@ class Sequence:
 
 
 class RawData:
-    def __init__(self, id='', name='', type='raw', data=None, sequence_num=0,
-                 isotopic_num=10, source=None, sequence=None, **kwargs):
+    def __init__(self, id='', name='', type='Unknown', data=None, sequence_num=0,
+                 isotopic_num=10, source=None, sequence=None, unit='fA', **kwargs):
         """
         Parameters
         ----------
@@ -1126,6 +1140,7 @@ class RawData:
         self.name = name
         self.type = type
         self.source = source
+        self.unit = unit
         self.isotopic_num = isotopic_num
         self.sequence_num = sequence_num
         self.interpolated_blank = None
@@ -1133,7 +1148,7 @@ class RawData:
             self.sequence: List[Sequence] = [
                 Sequence(index=index, name=item[0][0] if isinstance(item[0][0], str) and item[0][
                     0] != '' else f"{self.name}-{index + 1:02d}", data=item[1:], datetime=item[0][1], type_str=item[0][2],
-                         fitting_method=[0] * 5)
+                         fitting_method=[0] * 5, options=item[0][3])
                 for index, item in enumerate(data)]
         else:
             self.sequence: List[Sequence] = []

ararpy/smp/style.py

@@ -16,7 +16,6 @@ from .. import calc
 from . import (sample as samples, basic, initial, plots, )
 
 Sample = samples.Sample
-Info = samples.Info
 Table = samples.Table
 Plot = samples.Plot
 
@@ -49,8 +48,8 @@ def set_plot_style(smp: Sample):
     reset_plot_scale(smp)
     # Reset isochron data
     plots.reset_isochron_line_data(smp)
-    # Auto position of text
-    reset_text_position(smp)
+    # Auto position and contents of texts
+    reset_text(smp)
     # Set title, which are deleted in initializing
     suffix = f"{smp.Info.sample.name} {smp.Info.sample.material}"
     for figure_id, figure in basic.get_components(smp).items():
@@ -142,7 +141,7 @@ def reset_plot_scale(smp: Sample, only_figure: str = None):
             return xscale, yscale
 
 
-def reset_text_position(smp: Sample, only_figure: str = None):
+def reset_text(smp: Sample, only_figure: str = None):
     """
     Reset text position to default, if only figure is defined, only this figure will be reset.
     Parameters
@@ -161,9 +160,11 @@ def reset_text_position(smp: Sample, only_figure: str = None):
         text_1 = basic.get_plot_set(figure, 'Text for Set 1')
         if text_1 is not None:
             setattr(text_1, 'pos', [20, 40])
+            setattr(text_1, 'text', "")
         text_2 = basic.get_plot_set(figure, 'Text for Set 2')
         if text_2 is not None:
             setattr(text_2, 'pos', [70, 40])
+            setattr(text_2, 'text', "")
 
 
 # =======================

ararpy/smp/table.py

@@ -85,52 +85,103 @@ def update_handsontable(smp: Sample, data: list, id: str):
 
     def _strToBool(cols):
         bools_dict = {
-            'true': True, 'false': False, '1': True, '0': False, 'none': False,
+            'true': True, 'false': False, 'True': True, 'False': False, '1': True, '0': False, 'none': False,
         }
         return [bools_dict.get(str(col).lower(), False) for col in cols]
     try:
         smp.SequenceName = data[0]
     except IndexError:
         pass
+
+    update_all_table = False
     try:
-        smp.SequenceValue = data[1]
+        if data[1] != smp.SequenceValue:
+            smp.SequenceValue = data[1]
     except IndexError:
         pass
+    else:
+        update_all_table = True
+
     if id == '1':  # 样品值
-        data = _normalize_data(data, 12, 2)
+        data = _normalize_data(data, len(samples.SAMPLE_INTERCEPT_HEADERS), 2)
         smp.SampleIntercept = data
     elif id == '2':  # 本底值
-        data = _normalize_data(data, 12, 2)
+        data = _normalize_data(data, len(samples.BLANK_INTERCEPT_HEADERS), 2)
         smp.BlankIntercept = data
     elif id == '3':  # 校正值
-        data = _normalize_data(data, 12, 2)
+        data = _normalize_data(data, len(samples.CORRECTED_HEADERS), 2)
         smp.CorrectedValues = data
-    elif id == '4':  #
-        data = _normalize_data(data, 34, 2)
+    elif id == '4':  # Degas table
+        data = _normalize_data(data, len(samples.DEGAS_HEADERS), 2)
         smp.DegasValues = data
     elif id == '5':  # 发行表
-        data = _normalize_data(data, 13, 2)
+        data = _normalize_data(data, len(samples.PUBLISH_TABLE_HEADERS), 2)
         smp.PublishValues = data
     elif id == '6':  # 年龄谱
-        data = _normalize_data(data, 10, 2)
+        data = _normalize_data(data, len(samples.SPECTRUM_TABLE_HEADERS), 2)
         smp.ApparentAgeValues = data
     elif id == '7':  # 等时线
         smp.IsochronMark = data[2]
-        data = _normalize_data(data, 42, 3)
+        data = _normalize_data(data, len(samples.ISOCHRON_TABLE_HEADERS), 3)
         smp.IsochronValues = data
         smp.SelectedSequence1 = [
-            i for i in range(len(smp.IsochronMark)) if smp.IsochronMark[i] == 1]
+            i for i in range(len(smp.IsochronMark)) if str(smp.IsochronMark[i]) == "1"]
         smp.SelectedSequence2 = [
-            i for i in range(len(smp.IsochronMark)) if smp.IsochronMark[i] == 2]
+            i for i in range(len(smp.IsochronMark)) if str(smp.IsochronMark[i]) == "2"]
         smp.UnselectedSequence = [
             i for i in range(len(smp.IsochronMark)) if
             i not in smp.SelectedSequence1 + smp.SelectedSequence2]
+        #
+        smp.Info.results.selection[0]['data'] = smp.SelectedSequence1
+        smp.Info.results.selection[1]['data'] = smp.SelectedSequence2
+        smp.Info.results.selection[2]['data'] = smp.UnselectedSequence
     elif id == '8':  # 总参数
-        data = _normalize_data(data, 125, 2)
-        data[103: 115] = [_strToBool(i) for i in data[103: 115]]
+        data = _normalize_data(data, len(samples.TOTAL_PARAMS_HEADERS), 2)
+        data[101: 112] = [_strToBool(i) for i in data[101: 112]]
         smp.TotalParam = data
     else:
         raise ValueError(f"{id = }, The table id is not supported.")
-    update_table_data(smp, only_table=id)  # Update data of tables after changes of a table
+    if update_all_table:
+        update_table_data(smp)
+    else:
+        update_table_data(smp, only_table=id)  # Update data of tables after changes of a table
+
+
+def update_data_from_table(smp: Sample, only_table: str = None):
+    """
+    Update table data
+    Parameters
+    ----------
+    smp
+    only_table
+
+    Returns
+    -------
+
+    """
+    for key, comp in basic.get_components(smp).items():
+        if not isinstance(comp, Table):
+            continue
+        if only_table is not None and key != only_table:
+            continue
+        if key == '1':
+            smp.SampleIntercept = calc.arr.transpose(comp.data)[2:]
+        elif key == '2':
+            smp.BlankIntercept = calc.arr.transpose(comp.data)[2:]
+        elif key == '3':
+            smp.CorrectedValues = calc.arr.transpose(comp.data)[2:]
+        elif key == '4':
+            smp.DegasValues = calc.arr.transpose(comp.data)[2:]
+        elif key == '5':
+            smp.PublishValues = calc.arr.transpose(comp.data)[2:]
+        elif key == '6':
+            smp.ApparentAgeValues = calc.arr.transpose(comp.data)[2:]
+        elif key == '7':
+            smp.IsochronValues = calc.arr.transpose(comp.data)[3:]
+        elif key == '8':
+            smp.TotalParam = calc.arr.transpose(comp.data)[2:]
+        else:
+            pass
+
 
 

ararpy/test.py

@@ -23,9 +23,11 @@ def test():
     print(f"{file_path = }")
     print(f"sample = from_arr(file_path=file_path)")
     print(f"{sample.name() = }")
-    print(f"{sample.help = }")
-    print(f"sample.parameters() = {sample.parameters()}")
-    print(f"sample.parameters().to_df() = \n{sample.parameters().to_df()}")
+    sample.name("new name")
+    print(f"{sample.name() = }")
+    print(f"{sample.help() = }")
+    print(f"{sample.parameters() = }")
+    print(f"{sample.parameters().to_df() = }")
     print(sample.show_data())
     print(sample.sample())
     print(sample.blank().to_df().iloc[:, [1, 2, 3]])

{ararpy-0.0.24.dist-info → ararpy-0.1.11.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: ararpy
-Version: 0.0.24
+Version: 0.1.11
 Summary: A project for Ar-Ar geochronology
 Home-page: https://github.com/wuyangchn/ararpy.git
 Author: Yang Wu

ararpy-0.1.11.dist-info/RECORD

@@ -0,0 +1,60 @@
+ararpy/__init__.py,sha256=XKlsgklkzGfvqQkt59y-UST9aVhgCf-eXpEDiaZaynQ,6725
+ararpy/test.py,sha256=jdHhBvMbvDlxi0o2eRVG99nsUBNDA-0s2bbGbnXweo8,1130
+ararpy/calc/__init__.py,sha256=kUjRuLE8TLuKOv3i976RnGJoEMj23QBZDu37LWs81U4,322
+ararpy/calc/age.py,sha256=CUex9UxZbYinl9ypd7o86R3VRQFzahku3gW__fBeoss,5811
+ararpy/calc/arr.py,sha256=ntu6p3lUcF654SxLnFNrToLubXRWl101LRNFVJFulTQ,14871
+ararpy/calc/basic.py,sha256=wPzUXmrHAXdFkvd53JsH9Vae-o7O3LxYWztGQ5OpDhw,2871
+ararpy/calc/corr.py,sha256=n-mz-Uw-oC7ig6kSdbcq1Uca22NY21PeXgHY9Z-MZY4,18686
+ararpy/calc/err.py,sha256=63LtprqjemlIb1QGDst4Ggcv5KMSDHdlAIL-nyQs1eA,2691
+ararpy/calc/histogram.py,sha256=0GVbDdsjd91KQ1sa2B7NtZ4KGo0XpRIJapgIrzAwQUo,5777
+ararpy/calc/isochron.py,sha256=wJOiNKftwi8ipvNVanEcTfEgHV6slsZ1RL-y4v3rvq4,5610
+ararpy/calc/jvalue.py,sha256=zHUhJ1iYe5mPrY95mGYxoUPAp7hwu4coUgiHKiruKfM,1138
+ararpy/calc/plot.py,sha256=v-vJwciJIhKrdXKWAUZbYslez0zBrIa6awI-DopmRZg,1956
+ararpy/calc/raw_funcs.py,sha256=fhAmqpvTvWUegbLi2PNbFRIbKgbDmycDIWNic3z25hU,2536
+ararpy/calc/regression.py,sha256=UQ7e6_u_FUpIllKTUgPa6-HqFvRBI7qDqyKli7fFInE,40172
+ararpy/calc/spectra.py,sha256=iBhuQ03PyIKHbAQSexx3fZ6ZYaxM6P_uMyWdUeeMck4,1936
+ararpy/examples/022_VU124-M11a.ahd,sha256=3m0Gd-ZObou3KsnRNFMf77QwzT1Uz3nu3vA33Sqeyng,5414
+ararpy/examples/20WHA0103.age,sha256=cT-a4d7Wt77aotx6v0G47vulY_TZIcZUcaVHB3pqTPM,380416
+ararpy/examples/22WHA0078.xls,sha256=1XAAHmIhuswwZ3toCT-qTLrYzqXNDYWGjDyCTI3xaMY,2611729
+ararpy/examples/22WHA0433.age,sha256=YRM9l5S0cU20eD7en_5iR3a-eZk7btmjcU1Drae2QwM,421888
+ararpy/examples/22WHA0433.arr,sha256=ddfeVEXXw5T4LoIicK1GGxXHjwtpXcuPbO8Oj0Vui04,238259
+ararpy/examples/22WHA0433.full.xls,sha256=bupB_YZxtQKd6hh0MRBCKu7cRtiIhchtjHJ4Tjss_9Q,335872
+ararpy/examples/24WHN0001-51-592.XLS,sha256=hwTNoJf-ZyAVSd3SPNrwhRGO7dVS7brr2Ys-Sf8LbBI,140800
+ararpy/examples/AHD.input-filter,sha256=qJpqULIX-3b7JANzfg1sB61tf8cU2nxoncna8nTWwio,441
+ararpy/examples/ArAr.calc,sha256=i7da0rx-M4l0-j1vXOqsaCw3T8txQNGH3gON70-qmyA,599
+ararpy/examples/ArArCALC.age,sha256=Ft4I9BnWjbqsgn6ACCklioLyhHSKuIlbmqgFwOyb9M0,231936
+ararpy/examples/NGX-600 - Copy.TXT,sha256=EBaQZ6nVbR6R0bqtZVphcfXX2QaoD0R4INeaPMs_UoM,83752
+ararpy/examples/NGX-600.TXT,sha256=RQc5we9kTYetXmsCN8ThFPMhNLN2q82umeszSoCzMJE,81731
+ararpy/examples/NGX-XLS.input-filter,sha256=iyfTLsLHf0h58ePOsNQoBtG6UBLIf7V-zTGioRoWkxA,501
+ararpy/examples/Qtegra-exported-xls.input-filter,sha256=KuD3Dey82ecuKnqNMQqOcY3VXHgKbpE9Yxfl1ZC4_so,441
+ararpy/examples/S01-239.csv,sha256=J_PHT85XCxPd3TEGzBARGwKSkiAzz1nzNbrKUf00GBU,39566
+ararpy/examples/WH01.irra,sha256=Ws78m5p3fD4oybtkOWoAtvFyuLPxpL_A_ueIg2tnhnw,365
+ararpy/examples/raw_example.xls,sha256=ftcSiXRx_7nYnbqJVma1Yl3Yr_iuceAWlEjhJwlAvFM,1929895
+ararpy/examples/sample-default.smp,sha256=YNkoQGgPrsL_fXS7ZHxfRtLQWekCDqT9czS6vBScImk,432
+ararpy/files/__init__.py,sha256=l5B5ZQ01WdtvjjN0aMkyAFNgpwANdM_1I0tQbqnRuEY,69
+ararpy/files/arr_file.py,sha256=KqksGlEA6nmMQofTgi7v45flscQZVtefxaNCKrV3Am4,837
+ararpy/files/basic.py,sha256=nc7Hgo_qLSkdmtKzZmd5SQ8Jy0dhW46ly4gh-oisUDs,2095
+ararpy/files/calc_file.py,sha256=b4bzPsoVD9y5wDqFw-2HmhK6Rd7qwufnEjaYz_FLxos,27865
+ararpy/files/new_file.py,sha256=efblARIBROVLWS2w3-98BxLX5VZ8grRpiTkJFtf_rAk,214
+ararpy/files/raw_file.py,sha256=B2k4RjAp4EViwHKv6CbI5400Liaa7OW_eBjGSPlN9Ek,22768
+ararpy/files/xls.py,sha256=8ibT4ZRY2grK34ikKm1pDmlWFlVTgDL7vSMO6mphzrY,702
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 Root-Is-Purelib: true
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