antspymm 1.2.7__py3-none-any.whl → 1.3.1__py3-none-any.whl

{antspymm-1.2.7.dist-info → antspymm-1.3.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: antspymm
-Version: 1.2.7
+Version: 1.3.1
 Summary: multi-channel/time-series medical image processing with antspyx
 Home-page: https://github.com/stnava/ANTsPyMM
 Author: Avants, Gosselin, Tustison, Reardon
@@ -22,8 +22,7 @@ Requires-Dist: scikit-learn
 
 # ANTsPyMM
 
-
-[mapping](https://imgur.com/a/XzpXI3i)
+![mapping](https://i.imgur.com/qKqYjU9.jpeg)
 
 ## processing utilities for timeseries/multichannel images - mostly neuroimaging
 
@@ -57,16 +56,18 @@ ANTsPyMM will process several types of brain MRI into tabular form as well as no
 
     * basal forebrain (Avants et al HBM 2022 abstract)
 
-    * other regions (egMTL) 10.1101/2023.01.17.23284693
+    * other regions (eg MTL) 10.1101/2023.01.17.23284693
 
     * also produces jacobian data
 
 * rsfMRI: resting state functional MRI
 
-    * uses 10.1016/j.conb.2012.12.009 to estimate network specific correlations
+    * uses [a recent homotopic parcellation](https://pubmed.ncbi.nlm.nih.gov/36918136/) to estimate network specific correlations
 
     * f/ALFF 10.1016/j.jneumeth.2008.04.012
 
+    * [percent absolute fluctuation](https://www.frontiersin.org/journals/neuroscience/articles/10.3389/fnins.2022.888174/full)
+
 * NM2DMT: neuromelanin mid-brain images
 
     * CIT168 template 10.1101/211201
@@ -124,6 +125,8 @@ package data is installed.
 
 NOTE: some functions in `antspynet` will download deep network model weights on the fly.  if one is containerizing, then it would be worth running a test case through in the container to make sure all the relevant weights are pre-downloaded.
 
+NOTE: an example process for BIDS data on a cluster is [here](https://github.com/stnava/ANTPD_antspymm).  this repo is also a good place to try to learn how to use this tool.
+
 # example processing
 
 see the latest help but this snippet gives an idea of how one might use the package:
@@ -205,7 +208,7 @@ matched_mm_data2.to_csv( "matched_mm_data2.csv", index=False )
 
 ## an example on open neuro (BIDS) data
 
-from : [ANT PD](https://openneuro.org/datasets/ds001907/versions/3.0.2)
+from : [ANT PD](https://openneuro.org/datasets/ds001907/versions/3.0.2)   see also [this repo](https://github.com/stnava/ANTPD_antspymm).
 
 ```
 imagesBIDS/

antspymm-1.3.1.dist-info/RECORD

@@ -0,0 +1,7 @@
+antspymm/__init__.py,sha256=1fHqufHndrkJwz473av8qOf5-1xm5r-aKHuMAETGIiE,4462
+antspymm/mm.py,sha256=pJY1DIRTLf3ai6znZFoEnvuMHR7JUbusAq__3aahi2E,476486
+antspymm-1.3.1.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+antspymm-1.3.1.dist-info/METADATA,sha256=rfgI7TXJi7yRVNE-h4_QFNN_J1gBI2JQMGDQn_-_qkE,14590
+antspymm-1.3.1.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+antspymm-1.3.1.dist-info/top_level.txt,sha256=iyD1sRhCKzfwKRJLq5ZUeV9xsv1cGQl8Ejp6QwXM1Zg,9
+antspymm-1.3.1.dist-info/RECORD,,

{antspymm-1.2.7.dist-info → antspymm-1.3.1.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.42.0)
+Generator: bdist_wheel (0.43.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

antspymm-1.2.7.dist-info/RECORD

@@ -1,7 +0,0 @@
-antspymm/__init__.py,sha256=v2o6JW5xPArtVV5bq7Ly7y1_2eQVxZC9G1uK8__8a8Y,4133
-antspymm/mm.py,sha256=y7tdp0TtC28fJ_lYJwXqPsfrqDYKbRos9OhhdyMHdKk,438807
-antspymm-1.2.7.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-antspymm-1.2.7.dist-info/METADATA,sha256=ydvrVCmR5lbaHuTQSB9yb8W8YlaJd6qf9q7fj7W3MLE,14163
-antspymm-1.2.7.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
-antspymm-1.2.7.dist-info/top_level.txt,sha256=iyD1sRhCKzfwKRJLq5ZUeV9xsv1cGQl8Ejp6QwXM1Zg,9
-antspymm-1.2.7.dist-info/RECORD,,