anemoi-datasets 0.5.27__py3-none-any.whl → 0.5.28__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- anemoi/datasets/_version.py +2 -2
- anemoi/datasets/commands/recipe/__init__.py +93 -0
- anemoi/datasets/commands/recipe/format.py +55 -0
- anemoi/datasets/commands/recipe/migrate.py +555 -0
- anemoi/datasets/create/__init__.py +42 -1
- anemoi/datasets/create/config.py +2 -0
- anemoi/datasets/create/input/__init__.py +43 -63
- anemoi/datasets/create/input/action.py +296 -236
- anemoi/datasets/create/input/context/__init__.py +71 -0
- anemoi/datasets/create/input/context/field.py +54 -0
- anemoi/datasets/create/input/data_sources.py +2 -1
- anemoi/datasets/create/input/misc.py +0 -71
- anemoi/datasets/create/input/repeated_dates.py +0 -114
- anemoi/datasets/create/input/result/__init__.py +17 -0
- anemoi/datasets/create/input/{result.py → result/field.py} +9 -89
- anemoi/datasets/create/sources/accumulations.py +74 -94
- anemoi/datasets/create/sources/accumulations2.py +16 -45
- anemoi/datasets/create/sources/anemoi_dataset.py +46 -42
- anemoi/datasets/create/sources/constants.py +39 -38
- anemoi/datasets/create/sources/empty.py +26 -22
- anemoi/datasets/create/sources/forcings.py +29 -28
- anemoi/datasets/create/sources/grib.py +92 -72
- anemoi/datasets/create/sources/grib_index.py +46 -42
- anemoi/datasets/create/sources/hindcasts.py +56 -55
- anemoi/datasets/create/sources/legacy.py +10 -62
- anemoi/datasets/create/sources/mars.py +107 -131
- anemoi/datasets/create/sources/netcdf.py +28 -24
- anemoi/datasets/create/sources/opendap.py +28 -24
- anemoi/datasets/create/sources/recentre.py +42 -41
- anemoi/datasets/create/sources/repeated_dates.py +44 -0
- anemoi/datasets/create/sources/source.py +26 -48
- anemoi/datasets/create/sources/tendencies.py +67 -94
- anemoi/datasets/create/sources/xarray_support/__init__.py +29 -24
- anemoi/datasets/create/sources/xarray_support/field.py +4 -4
- anemoi/datasets/create/sources/xarray_zarr.py +28 -24
- anemoi/datasets/create/sources/zenodo.py +43 -39
- anemoi/datasets/create/utils.py +0 -42
- anemoi/datasets/data/dataset.py +6 -0
- anemoi/datasets/data/grids.py +0 -152
- anemoi/datasets/data/rolling_average.py +141 -0
- anemoi/datasets/data/stores.py +7 -9
- anemoi/datasets/dates/__init__.py +2 -0
- anemoi/datasets/dumper.py +76 -0
- anemoi/datasets/grids.py +1 -178
- anemoi/datasets/schemas/recipe.json +131 -0
- {anemoi_datasets-0.5.27.dist-info → anemoi_datasets-0.5.28.dist-info}/METADATA +5 -2
- {anemoi_datasets-0.5.27.dist-info → anemoi_datasets-0.5.28.dist-info}/RECORD +51 -51
- anemoi/datasets/create/filter.py +0 -47
- anemoi/datasets/create/input/concat.py +0 -161
- anemoi/datasets/create/input/context.py +0 -86
- anemoi/datasets/create/input/empty.py +0 -53
- anemoi/datasets/create/input/filter.py +0 -117
- anemoi/datasets/create/input/function.py +0 -232
- anemoi/datasets/create/input/join.py +0 -129
- anemoi/datasets/create/input/pipe.py +0 -66
- anemoi/datasets/create/input/step.py +0 -173
- anemoi/datasets/create/input/template.py +0 -161
- {anemoi_datasets-0.5.27.dist-info → anemoi_datasets-0.5.28.dist-info}/WHEEL +0 -0
- {anemoi_datasets-0.5.27.dist-info → anemoi_datasets-0.5.28.dist-info}/entry_points.txt +0 -0
- {anemoi_datasets-0.5.27.dist-info → anemoi_datasets-0.5.28.dist-info}/licenses/LICENSE +0 -0
- {anemoi_datasets-0.5.27.dist-info → anemoi_datasets-0.5.28.dist-info}/top_level.txt +0 -0
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# (C) Copyright 2024 Anemoi contributors.
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#
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# This software is licensed under the terms of the Apache Licence Version 2.0
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# which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
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#
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# In applying this licence, ECMWF does not waive the privileges and immunities
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# granted to it by virtue of its status as an intergovernmental organisation
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# nor does it submit to any jurisdiction.
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import logging
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from copy import deepcopy
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from typing import Any
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from .action import Action
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from .action import ActionContext
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from .context import Context
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from .result import Result
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from .template import notify_result
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from .trace import trace_datasource
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from .trace import trace_select
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LOG = logging.getLogger(__name__)
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class StepResult(Result):
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"""Represents the result of a step in the data processing pipeline."""
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def __init__(
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self, context: Context, action_path: list[str], group_of_dates: Any, action: Action, upstream_result: Result
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) -> None:
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"""Initialize a StepResult instance.
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Parameters
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----------
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context
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The context in which the step is executed.
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action_path
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The path of actions leading to this step.
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group_of_dates
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The group of dates associated with this step.
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action
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The action associated with this step.
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upstream_result
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The result of the upstream step.
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"""
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super().__init__(context, action_path, group_of_dates)
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assert isinstance(upstream_result, Result), type(upstream_result)
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self.upstream_result: Result = upstream_result
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self.action: Action = action
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@property
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@notify_result
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@trace_datasource
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def datasource(self) -> Any:
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"""Retrieve the datasource associated with this step result."""
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raise NotImplementedError(f"Not implemented in {self.__class__.__name__}")
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class StepAction(Action):
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"""Represents an action that is part of a step in the data processing pipeline."""
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result_class: type[StepResult] | None = None
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def __init__(
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self, context: ActionContext, action_path: list[str], previous_step: Any, *args: Any, **kwargs: Any
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) -> None:
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"""Initialize a StepAction instance.
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Parameters
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----------
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context
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The context in which the action is executed.
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action_path
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The path of actions leading to this step.
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previous_step
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The previous step in the pipeline.
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"""
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super().__init__(context, action_path, *args, **kwargs)
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self.previous_step: Any = previous_step
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@trace_select
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def select(self, group_of_dates: Any) -> StepResult:
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"""Select the result for a given group of dates.
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Parameters
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----------
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group_of_dates
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The group of dates to select the result for.
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Returns
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-------
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unknown
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The result of the step.
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"""
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return self.result_class(
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self.context,
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self.action_path,
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group_of_dates,
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self,
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self.previous_step.select(group_of_dates),
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)
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def __repr__(self) -> str:
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"""Return a string representation of the StepAction instance.
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Returns
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-------
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unknown
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String representation of the instance.
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"""
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return self._repr(self.previous_step, _inline_=str(self.kwargs))
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def step_factory(config: dict[str, Any], context: ActionContext, action_path: list[str], previous_step: Any) -> Any:
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"""Factory function to create a step action based on the given configuration.
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Parameters
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----------
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config
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The configuration dictionary for the step.
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context
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The context in which the step is executed.
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action_path
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The path of actions leading to this step.
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previous_step
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The previous step in the pipeline.
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Returns
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-------
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unknown
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An instance of a step action.
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"""
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from .filter import FilterStepAction
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from .filter import FunctionStepAction
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assert isinstance(context, Context), (type, context)
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if not isinstance(config, dict):
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raise ValueError(f"Invalid input config {config}")
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config = deepcopy(config)
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assert len(config) == 1, config
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key = list(config.keys())[0]
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cls = dict(
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filter=FilterStepAction,
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# rename=RenameAction,
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# remapping=RemappingAction,
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).get(key)
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if isinstance(config[key], list):
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args, kwargs = config[key], {}
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if isinstance(config[key], dict):
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args, kwargs = [], config[key]
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if isinstance(config[key], str):
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args, kwargs = [config[key]], {}
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if cls is not None:
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return cls(context, action_path, previous_step, *args, **kwargs)
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# Try filters from transform filter registry
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from anemoi.transform.filters import filter_registry as transform_filter_registry
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if transform_filter_registry.is_registered(key):
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from ..filter import TransformFilter
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return FunctionStepAction(
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context, action_path + [key], previous_step, key, TransformFilter(context, key, config)
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)
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raise ValueError(f"Unknown step action `{key}`")
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# (C) Copyright 2024 Anemoi contributors.
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#
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# This software is licensed under the terms of the Apache Licence Version 2.0
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# which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
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#
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# In applying this licence, ECMWF does not waive the privileges and immunities
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# granted to it by virtue of its status as an intergovernmental organisation
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# nor does it submit to any jurisdiction.
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import logging
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from abc import ABC
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if isinstance(x, Substitution):
|
|
124
|
-
return x.resolve(context)
|
|
125
|
-
|
|
126
|
-
return x
|
|
127
|
-
|
|
128
|
-
|
|
129
|
-
def substitute(context: Context, x: Any) -> Any:
|
|
130
|
-
"""Recursively substitute references in the given structure using the context.
|
|
131
|
-
|
|
132
|
-
Parameters
|
|
133
|
-
----------
|
|
134
|
-
context : Context
|
|
135
|
-
The context to use for substitution.
|
|
136
|
-
x : Union[tuple, list, dict, str, Any]
|
|
137
|
-
The structure to substitute.
|
|
138
|
-
|
|
139
|
-
Returns
|
|
140
|
-
-------
|
|
141
|
-
Any
|
|
142
|
-
The substituted structure.
|
|
143
|
-
"""
|
|
144
|
-
if isinstance(x, tuple):
|
|
145
|
-
return tuple([substitute(context, y) for y in x])
|
|
146
|
-
|
|
147
|
-
if isinstance(x, list):
|
|
148
|
-
return [substitute(context, y) for y in x]
|
|
149
|
-
|
|
150
|
-
if isinstance(x, dict):
|
|
151
|
-
return {k: substitute(context, v) for k, v in x.items()}
|
|
152
|
-
|
|
153
|
-
if not isinstance(x, str):
|
|
154
|
-
return x
|
|
155
|
-
|
|
156
|
-
if re.match(r"^\${[\.\w\-]+}$", x):
|
|
157
|
-
path = x[2:-1].split(".")
|
|
158
|
-
context.will_need_reference(path)
|
|
159
|
-
return Reference(context, path)
|
|
160
|
-
|
|
161
|
-
return x
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|