anemoi-datasets 0.5.15__py3-none-any.whl → 0.5.17__py3-none-any.whl

anemoi/datasets/create/functions/sources/xarray/time.py

@@ -1,177 +0,0 @@
-# (C) Copyright 2024 Anemoi contributors.
-#
-# This software is licensed under the terms of the Apache Licence Version 2.0
-# which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
-#
-# In applying this licence, ECMWF does not waive the privileges and immunities
-# granted to it by virtue of its status as an intergovernmental organisation
-# nor does it submit to any jurisdiction.
-
-
-import datetime
-import logging
-
-from anemoi.utils.dates import as_datetime
-
-LOG = logging.getLogger(__name__)
-
-
-class Time:
-
-    @classmethod
-    def from_coordinates(cls, coordinates):
-        time_coordinate = [c for c in coordinates if c.is_time]
-        step_coordinate = [c for c in coordinates if c.is_step]
-        date_coordinate = [c for c in coordinates if c.is_date]
-
-        if len(date_coordinate) == 0 and len(time_coordinate) == 1 and len(step_coordinate) == 1:
-            return ForecastFromValidTimeAndStep(time_coordinate[0], step_coordinate[0])
-
-        if len(date_coordinate) == 0 and len(time_coordinate) == 1 and len(step_coordinate) == 0:
-            return Analysis(time_coordinate[0])
-
-        if len(date_coordinate) == 0 and len(time_coordinate) == 0 and len(step_coordinate) == 0:
-            return Constant()
-
-        if len(date_coordinate) == 1 and len(time_coordinate) == 1 and len(step_coordinate) == 0:
-            return ForecastFromValidTimeAndBaseTime(date_coordinate[0], time_coordinate[0])
-
-        if len(date_coordinate) == 1 and len(time_coordinate) == 0 and len(step_coordinate) == 1:
-            return ForecastFromBaseTimeAndDate(date_coordinate[0], step_coordinate[0])
-
-        if len(date_coordinate) == 1 and len(time_coordinate) == 1 and len(step_coordinate) == 1:
-            return ForecastFromValidTimeAndStep(time_coordinate[0], step_coordinate[0], date_coordinate[0])
-
-        LOG.error("")
-        LOG.error(f"{len(date_coordinate)} date_coordinate")
-        for c in date_coordinate:
-            LOG.error("    %s %s %s %s", c, c.is_date, c.is_time, c.is_step)
-            # LOG.error('    %s', c.variable)
-
-        LOG.error("")
-        LOG.error(f"{len(time_coordinate)} time_coordinate")
-        for c in time_coordinate:
-            LOG.error("    %s %s %s %s", c, c.is_date, c.is_time, c.is_step)
-            # LOG.error('    %s', c.variable)
-
-        LOG.error("")
-        LOG.error(f"{len(step_coordinate)} step_coordinate")
-        for c in step_coordinate:
-            LOG.error("    %s %s %s %s", c, c.is_date, c.is_time, c.is_step)
-            # LOG.error('    %s', c.variable)
-
-        raise NotImplementedError(f"{len(date_coordinate)=} {len(time_coordinate)=} {len(step_coordinate)=}")
-
-    def select_valid_datetime(self, variable):
-        raise NotImplementedError(f"{self.__class__.__name__}.select_valid_datetime()")
-
-
-class Constant(Time):
-
-    def fill_time_metadata(self, coords_values, metadata):
-        return None
-
-    def select_valid_datetime(self, variable):
-        return None
-
-
-class Analysis(Time):
-
-    def __init__(self, time_coordinate):
-        self.time_coordinate_name = time_coordinate.variable.name
-
-    def fill_time_metadata(self, coords_values, metadata):
-        valid_datetime = coords_values[self.time_coordinate_name]
-
-        metadata["date"] = as_datetime(valid_datetime).strftime("%Y%m%d")
-        metadata["time"] = as_datetime(valid_datetime).strftime("%H%M")
-        metadata["step"] = 0
-
-        return valid_datetime
-
-    def select_valid_datetime(self, variable):
-        return self.time_coordinate_name
-
-
-class ForecastFromValidTimeAndStep(Time):
-
-    def __init__(self, time_coordinate, step_coordinate, date_coordinate=None):
-        self.time_coordinate_name = time_coordinate.variable.name
-        self.step_coordinate_name = step_coordinate.variable.name
-        self.date_coordinate_name = date_coordinate.variable.name if date_coordinate else None
-
-    def fill_time_metadata(self, coords_values, metadata):
-        valid_datetime = coords_values[self.time_coordinate_name]
-        step = coords_values[self.step_coordinate_name]
-
-        assert isinstance(step, datetime.timedelta)
-        base_datetime = valid_datetime - step
-
-        hours = step.total_seconds() / 3600
-        assert int(hours) == hours
-
-        metadata["date"] = as_datetime(base_datetime).strftime("%Y%m%d")
-        metadata["time"] = as_datetime(base_datetime).strftime("%H%M")
-        metadata["step"] = int(hours)
-
-        # When date is present, it should be compatible with time and step
-
-        if self.date_coordinate_name is not None:
-            # Not sure that this is the correct assumption
-            assert coords_values[self.date_coordinate_name] == base_datetime, (
-                coords_values[self.date_coordinate_name],
-                base_datetime,
-            )
-
-        return valid_datetime
-
-    def select_valid_datetime(self, variable):
-        return self.time_coordinate_name
-
-
-class ForecastFromValidTimeAndBaseTime(Time):
-
-    def __init__(self, date_coordinate, time_coordinate):
-        self.date_coordinate.name = date_coordinate.name
-        self.time_coordinate.name = time_coordinate.name
-
-    def fill_time_metadata(self, coords_values, metadata):
-        valid_datetime = coords_values[self.time_coordinate_name]
-        base_datetime = coords_values[self.date_coordinate_name]
-
-        step = valid_datetime - base_datetime
-
-        hours = step.total_seconds() / 3600
-        assert int(hours) == hours
-
-        metadata["date"] = as_datetime(base_datetime).strftime("%Y%m%d")
-        metadata["time"] = as_datetime(base_datetime).strftime("%H%M")
-        metadata["step"] = int(hours)
-
-        return valid_datetime
-
-    def select_valid_datetime(self, variable):
-        return self.time_coordinate_name
-
-
-class ForecastFromBaseTimeAndDate(Time):
-
-    def __init__(self, date_coordinate, step_coordinate):
-        self.date_coordinate_name = date_coordinate.name
-        self.step_coordinate_name = step_coordinate.name
-
-    def fill_time_metadata(self, coords_values, metadata):
-
-        date = coords_values[self.date_coordinate_name]
-        step = coords_values[self.step_coordinate_name]
-        assert isinstance(step, datetime.timedelta)
-
-        metadata["date"] = as_datetime(date).strftime("%Y%m%d")
-        metadata["time"] = as_datetime(date).strftime("%H%M")
-
-        hours = step.total_seconds() / 3600
-
-        assert int(hours) == hours
-        metadata["step"] = int(hours)
-
-        return date + step

anemoi/datasets/create/functions/sources/xarray/variable.py

@@ -1,188 +0,0 @@
-# (C) Copyright 2024 Anemoi contributors.
-#
-# This software is licensed under the terms of the Apache Licence Version 2.0
-# which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
-#
-# In applying this licence, ECMWF does not waive the privileges and immunities
-# granted to it by virtue of its status as an intergovernmental organisation
-# nor does it submit to any jurisdiction.
-
-
-import logging
-import math
-from functools import cached_property
-
-import numpy as np
-
-from .field import XArrayField
-
-LOG = logging.getLogger(__name__)
-
-
-class Variable:
-    def __init__(
-        self,
-        *,
-        ds,
-        variable,
-        coordinates,
-        grid,
-        time,
-        metadata,
-    ):
-        self.ds = ds
-        self.variable = variable
-
-        self.grid = grid
-        self.coordinates = coordinates
-
-        self._metadata = metadata.copy()
-        self._metadata.update({"variable": variable.name, "param": variable.name})
-
-        self.time = time
-
-        self.shape = tuple(len(c.variable) for c in coordinates if c.is_dim and not c.scalar and not c.is_grid)
-        self.names = {c.variable.name: c for c in coordinates if c.is_dim and not c.scalar and not c.is_grid}
-        self.by_name = {c.variable.name: c for c in coordinates}
-
-        # We need that alias for the time dimension
-        self._aliases = dict(valid_datetime="time")
-
-        self.length = math.prod(self.shape)
-
-    @property
-    def name(self):
-        return self.variable.name
-
-    def __len__(self):
-        return self.length
-
-    @property
-    def grid_mapping(self):
-        grid_mapping = self.variable.attrs.get("grid_mapping", None)
-        if grid_mapping is None:
-            return None
-        return self.ds[grid_mapping].attrs
-
-    def grid_points(self):
-        return self.grid.grid_points
-
-    @property
-    def latitudes(self):
-        return self.grid.latitudes
-
-    @property
-    def longitudes(self):
-        return self.grid.longitudes
-
-    def __repr__(self):
-        return "Variable[name=%s,coordinates=%s,metadata=%s]" % (
-            self.variable.name,
-            self.coordinates,
-            self._metadata,
-        )
-
-    def __getitem__(self, i):
-        """Get a 2D field from the variable"""
-
-        if i >= self.length:
-            raise IndexError(i)
-
-        coords = np.unravel_index(i, self.shape)
-        kwargs = {k: v for k, v in zip(self.names, coords)}
-        return XArrayField(self, self.variable.isel(kwargs))
-
-    def sel(self, missing, **kwargs):
-
-        if not kwargs:
-            return self
-
-        k, v = kwargs.popitem()
-
-        user_provided_k = k
-
-        if k == "valid_datetime":
-            # Ask the Time object to select the valid datetime
-            k = self.time.select_valid_datetime(self)
-            if k is None:
-                return None
-
-        c = self.by_name.get(k)
-
-        # assert c is not None, f"Could not find coordinate {k} in {self.variable.name} {self.coordinates} {list(self.by_name)}"
-
-        if c is None:
-            missing[k] = v
-            return self.sel(missing, **kwargs)
-
-        i = c.index(v)
-        if i is None:
-            if k != user_provided_k:
-                LOG.warning(f"Could not find {user_provided_k}={v} in {c} (alias of {k})")
-            else:
-                LOG.warning(f"Could not find {k}={v} in {c}")
-            return None
-
-        coordinates = [x.reduced(i) if c is x else x for x in self.coordinates]
-
-        metadata = self._metadata.copy()
-        metadata.update({k: v})
-
-        variable = Variable(
-            ds=self.ds,
-            variable=self.variable.isel({k: i}),
-            coordinates=coordinates,
-            grid=self.grid,
-            time=self.time,
-            metadata=metadata,
-        )
-
-        return variable.sel(missing, **kwargs)
-
-    def match(self, **kwargs):
-
-        if "param" in kwargs:
-            assert "variable" not in kwargs
-            kwargs["variable"] = kwargs.pop("param")
-
-        if "variable" in kwargs:
-            name = kwargs.pop("variable")
-            if not isinstance(name, (list, tuple)):
-                name = [name]
-            if self.variable.name not in name:
-                return False, None
-            return True, kwargs
-        return True, kwargs
-
-
-class FilteredVariable:
-    def __init__(self, variable, **kwargs):
-        self.variable = variable
-        self.kwargs = kwargs
-
-    @cached_property
-    def fields(self):
-        """Filter the fields of a variable based on metadata.
-
-        Returns
-        -------
-        list
-            A list of fields that match the metadata.
-        """
-        return [
-            field
-            for field in self.variable
-            if all(field.metadata(k, default=None) == v for k, v in self.kwargs.items())
-        ]
-
-    @property
-    def length(self):
-        return len(self.fields)
-
-    def __len__(self):
-        return self.length
-
-    def __getitem__(self, i):
-        if i >= self.length:
-            raise IndexError(i)
-        return self.fields[i]

anemoi/datasets/create/functions/sources/xarray_kerchunk.py

@@ -1,42 +0,0 @@
-# (C) Copyright 2024 Anemoi contributors.
-#
-# This software is licensed under the terms of the Apache Licence Version 2.0
-# which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
-#
-# In applying this licence, ECMWF does not waive the privileges and immunities
-# granted to it by virtue of its status as an intergovernmental organisation
-# nor does it submit to any jurisdiction.
-
-
-from earthkit.data.core.fieldlist import MultiFieldList
-
-from . import iterate_patterns
-from .xarray import load_one
-
-
-def load_many(emoji, context, dates, pattern, options, **kwargs):
-
-    result = []
-    options = options.copy() if options is not None else {}
-
-    options.setdefault("engine", "zarr")
-    options.setdefault("backend_kwargs", {})
-
-    backend_kwargs = options["backend_kwargs"]
-    backend_kwargs.setdefault("consolidated", False)
-    backend_kwargs.setdefault("storage_options", {})
-
-    storage_options = backend_kwargs["storage_options"]
-    storage_options.setdefault("remote_protocol", "s3")
-    storage_options.setdefault("remote_options", {"anon": True})
-
-    for path, dates in iterate_patterns(pattern, dates, **kwargs):
-        storage_options["fo"] = path
-
-        result.append(load_one(emoji, context, dates, "reference://", options=options, **kwargs))
-
-    return MultiFieldList(result)
-
-
-def execute(context, dates, json, options=None, **kwargs):
-    return load_many("🧱", context, dates, json, options, **kwargs)

anemoi/datasets/create/functions/sources/xarray_zarr.py

@@ -1,15 +0,0 @@
-# (C) Copyright 2024 Anemoi contributors.
-#
-# This software is licensed under the terms of the Apache Licence Version 2.0
-# which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
-#
-# In applying this licence, ECMWF does not waive the privileges and immunities
-# granted to it by virtue of its status as an intergovernmental organisation
-# nor does it submit to any jurisdiction.
-
-
-from .xarray import load_many
-
-
-def execute(context, dates, url, *args, **kwargs):
-    return load_many("🇿", context, dates, url, *args, **kwargs)

anemoi/datasets/utils/fields.py

@@ -1,47 +0,0 @@
-# (C) Copyright 2024 Anemoi contributors.
-#
-# This software is licensed under the terms of the Apache Licence Version 2.0
-# which can be obtained at http://www.apache.org/licenses/LICENSE-2.0.
-#
-# In applying this licence, ECMWF does not waive the privileges and immunities
-# granted to it by virtue of its status as an intergovernmental organisation
-# nor does it submit to any jurisdiction.
-
-
-class WrappedField:
-    def __init__(self, field):
-        self._field = field
-
-    def __getattr__(self, name):
-        return getattr(self._field, name)
-
-    def __repr__(self) -> str:
-        return repr(self._field)
-
-
-class NewDataField(WrappedField):
-    def __init__(self, field, data):
-        super().__init__(field)
-        self._data = data
-        self.shape = data.shape
-
-    def to_numpy(self, flatten=False, dtype=None, index=None):
-        data = self._data
-        if dtype is not None:
-            data = data.astype(dtype)
-        if flatten:
-            data = data.flatten()
-        if index is not None:
-            data = data[index]
-        return data
-
-
-class NewMetadataField(WrappedField):
-    def __init__(self, field, **kwargs):
-        super().__init__(field)
-        self._metadata = kwargs
-
-    def metadata(self, *args, **kwargs):
-        if len(args) == 1 and args[0] in self._metadata:
-            return self._metadata[args[0]]
-        return self._field.metadata(*args, **kwargs)

anemoi_datasets-0.5.15.dist-info/RECORD

@@ -1,129 +0,0 @@
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-anemoi/datasets/commands/__init__.py,sha256=O5W3yHZywRoAqmRUioAr3zMCh0hGVV18wZYGvc00ioM,698
-anemoi/datasets/commands/cleanup.py,sha256=2rD34bHtfOCLwQh7yXa02IJmmOYMOma4YDj0PM-2-Jc,1456
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-anemoi/datasets/commands/copy.py,sha256=2owwwcih6mzrmgxrKNmm1B9ngjxZ6q3ZVo3S7grrGWQ,11305
-anemoi/datasets/commands/create.py,sha256=Es8BV2d9iazAjiGWaXf5EUmjkGk6-whGHaOEYG34CBU,5567
-anemoi/datasets/commands/finalise-additions.py,sha256=ZCUa5CbScR_tEImcJe9AhhGryyrsq1bYhM-dtjaIw7M,1552
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-anemoi/datasets/commands/inspect.py,sha256=r6MN59ndyRi9x8yah0xRN__663FKBPU_5rl-eUgPtuM,18795
-anemoi/datasets/commands/load-additions.py,sha256=7jmeSKjRzWRpgT0P5Sp9TwUvw7Bo2KbGO645qmIZFDE,1628
-anemoi/datasets/commands/load.py,sha256=IAw3zGZ_tY127ziExz62snPhyYM8qgNmLRZY0lX0aPE,1698
-anemoi/datasets/commands/patch.py,sha256=UBIO-vhytfuwTzTqlwkpTg-ziRSdoq7GCgpZiO54VDk,1235
-anemoi/datasets/commands/publish.py,sha256=z1MV9_1BsEnw81Y_17fHkKGYe8_ZJo9eeQ1kGP5RAsg,1080
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-anemoi/datasets/create/chunks.py,sha256=c7ufk-EamAGqxOI4ScTFlBzdEiH6V1R0f0SPavtZ2Xw,2457
-anemoi/datasets/create/config.py,sha256=Tq9kJ-bKhYSTWCXNa8lZIJpO3RteZfCr5hQVM12IgD0,8892
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-anemoi/datasets/create/size.py,sha256=5fIF0yo63dTowojfeG9-MNkgypP5SA94WralxTZwxw4,1055
-anemoi/datasets/create/utils.py,sha256=3vRCPOrW0a7ZVx7gsflORwab74LV_BVVkgo_3SgyLpw,3347
-anemoi/datasets/create/writer.py,sha256=6XSIgNwKkjrkdnSvr69mXD8McjT3iYJ0d1rOnxaGuCQ,1394
-anemoi/datasets/create/zarr.py,sha256=0DkHwKaBpvTOrU1KmScLEfff_KfT1Rw5DXiRMD2d3Ws,5506
-anemoi/datasets/create/functions/__init__.py,sha256=qeoEndq4f0gosfyfb-t0CZcLdngJ4GlZIgGs0bp9j0U,1965
-anemoi/datasets/create/functions/filters/__init__.py,sha256=SP6ReV1WYIf2Typf1FUaRHhphFGpU9kBoYtI-bYdu5U,395
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-anemoi/datasets/create/functions/filters/pressure_level_relative_humidity_to_specific_humidity.py,sha256=jjmocA4WDKCAL49QUFk_3S0JRiPMmeVM7Wlxmfr1v6c,1857
-anemoi/datasets/create/functions/filters/pressure_level_specific_humidity_to_relative_humidity.py,sha256=e8LvXUq-qNKJrcjb1DSUXaPeFfxcWxFjGAkm47cOnE8,1855
-anemoi/datasets/create/functions/filters/rename.py,sha256=cDF3xmdhwzIZn_nwaO3hxG4fb2vpKtJtmy0ZdLGXyHI,2481
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-anemoi/datasets/create/functions/filters/single_level_relative_humidity_to_dewpoint.py,sha256=pTM5Hwsi9yeuBmz66m3Zlmr554USoLzgzMMGSMh4BmM,1908
-anemoi/datasets/create/functions/filters/single_level_relative_humidity_to_specific_humidity.py,sha256=BnuLrIFcOh_qJBmxwdJqjGqoH0ca5zyKdZgF6QPmJY8,4090
-anemoi/datasets/create/functions/filters/single_level_specific_humidity_to_relative_humidity.py,sha256=xqfklEwCqrQlhU6NV8vlVEZdY-hN3SpPpcNny2geVUI,12686
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