anemoi-datasets 0.3.10__py3-none-any.whl → 0.4.2__py3-none-any.whl

anemoi/datasets/data/stores.py

@@ -9,6 +9,7 @@ import logging
 import os
 import warnings
 from functools import cached_property
+from urllib.parse import urlparse
 
 import numpy as np
 import zarr
@@ -40,7 +41,9 @@ class ReadOnlyStore(zarr.storage.BaseStore):
 
 
 class HTTPStore(ReadOnlyStore):
-    """We write our own HTTPStore because the one used by zarr (fsspec) does not play well with fork() and multiprocessing."""
+    """We write our own HTTPStore because the one used by zarr (s3fs)
+    does not play well with fork() and multiprocessing.
+    """
 
     def __init__(self, url):
         self.url = url
@@ -58,15 +61,16 @@ class HTTPStore(ReadOnlyStore):
 
 
 class S3Store(ReadOnlyStore):
-    """We write our own S3Store because the one used by zarr (fsspec) does not play well with fork() and multiprocessing."""
+    """We write our own S3Store because the one used by zarr (s3fs)
+    does not play well with fork(). We also get to control the s3 client
+    options using the anemoi configs.
+    """
 
-    def __init__(self, url):
-        import boto3
-
-        self.bucket, self.key = url[5:].split("/", 1)
+    def __init__(self, url, region=None):
+        from anemoi.utils.s3 import s3_client
 
-        # TODO: get the profile name from the url
-        self.s3 = boto3.Session(profile_name=None).client("s3")
+        _, _, self.bucket, self.key = url.split("/", 3)
+        self.s3 = s3_client(self.bucket, region=region)
 
     def __getitem__(self, key):
         try:
@@ -99,18 +103,37 @@ class DebugStore(ReadOnlyStore):
         return key in self.store
 
 
-def open_zarr(path, dont_fail=False, cache=None):
-    try:
-        store = path
+def name_to_zarr_store(path_or_url):
+    store = path_or_url
+
+    if store.startswith("s3://"):
+        store = S3Store(store)
 
-        if store.startswith("http://") or store.startswith("https://"):
+    elif store.startswith("http://") or store.startswith("https://"):
+        parsed = urlparse(store)
+        bits = parsed.netloc.split(".")
+        if len(bits) == 5 and (bits[1], bits[3], bits[4]) == ("s3", "amazonaws", "com"):
+            s3_url = f"s3://{bits[0]}{parsed.path}"
+            store = S3Store(s3_url, region=bits[2])
+        else:
             store = HTTPStore(store)
 
-        elif store.startswith("s3://"):
-            store = S3Store(store)
+    return store
+
+
+def open_zarr(path, dont_fail=False, cache=None):
+    try:
+        store = name_to_zarr_store(path)
 
         if DEBUG_ZARR_LOADING:
             if isinstance(store, str):
+                import os
+
+                if not os.path.isdir(store):
+                    raise NotImplementedError(
+                        "DEBUG_ZARR_LOADING is only implemented for DirectoryStore. "
+                        "Please disable it for other backends."
+                    )
                 store = zarr.storage.DirectoryStore(store)
             store = DebugStore(store)
 

anemoi/datasets/dates/__init__.py

@@ -96,7 +96,7 @@ class ValuesDates(Dates):
 
 
 class StartEndDates(Dates):
-    def __init__(self, start, end, frequency=1, **kwargs):
+    def __init__(self, start, end, frequency=1, months=None, **kwargs):
         frequency = frequency_to_hours(frequency)
 
         def _(x):
@@ -128,6 +128,12 @@ class StartEndDates(Dates):
         date = start
         self.values = []
         while date <= end:
+
+            if months is not None:
+                if date.month not in months:
+                    date += increment
+                    continue
+
             self.values.append(date)
             date += increment
 

anemoi/datasets/dates/groups.py

@@ -61,6 +61,9 @@ class Groups:
             count += 1
         return count
 
+    def __repr__(self):
+        return f"{self.__class__.__name__}(dates={len(self)})"
+
 
 class Filter:
     def __init__(self, missing):

{anemoi_datasets-0.3.10.dist-info → anemoi_datasets-0.4.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: anemoi-datasets
-Version: 0.3.10
+Version: 0.4.2
 Summary: A package to hold various functions to support training of ML models on ECMWF data.
 Author-email: "European Centre for Medium-Range Weather Forecasts (ECMWF)" <software.support@ecmwf.int>
 License: Apache License
@@ -223,49 +223,65 @@ Classifier: Programming Language :: Python :: Implementation :: CPython
 Classifier: Programming Language :: Python :: Implementation :: PyPy
 Requires-Python: >=3.9
 License-File: LICENSE
-Requires-Dist: anemoi-utils[provenance] >=0.3.4
+Requires-Dist: anemoi-utils[provenance] >=0.3.11
 Requires-Dist: numpy
 Requires-Dist: pyyaml
 Requires-Dist: semantic-version
 Requires-Dist: tqdm
-Requires-Dist: zarr <=2.17
+Requires-Dist: zarr
 Provides-Extra: all
+Requires-Dist: aiohttp ; extra == 'all'
 Requires-Dist: boto3 ; extra == 'all'
-Requires-Dist: climetlab >=0.23.2 ; extra == 'all'
+Requires-Dist: earthkit-data[mars] >=0.9 ; extra == 'all'
+Requires-Dist: earthkit-geo >=0.2 ; extra == 'all'
 Requires-Dist: earthkit-meteo ; extra == 'all'
 Requires-Dist: ecmwflibs >=0.6.3 ; extra == 'all'
 Requires-Dist: entrypoints ; extra == 'all'
+Requires-Dist: gcsfs ; extra == 'all'
+Requires-Dist: kerchunk ; extra == 'all'
 Requires-Dist: pyproj ; extra == 'all'
 Requires-Dist: requests ; extra == 'all'
 Requires-Dist: s3fs ; extra == 'all'
 Provides-Extra: create
-Requires-Dist: climetlab >=0.23.2 ; extra == 'create'
+Requires-Dist: earthkit-data[mars] >=0.9 ; extra == 'create'
+Requires-Dist: earthkit-geo >=0.2 ; extra == 'create'
 Requires-Dist: earthkit-meteo ; extra == 'create'
 Requires-Dist: ecmwflibs >=0.6.3 ; extra == 'create'
 Requires-Dist: entrypoints ; extra == 'create'
 Requires-Dist: pyproj ; extra == 'create'
 Provides-Extra: dev
+Requires-Dist: aiohttp ; extra == 'dev'
 Requires-Dist: boto3 ; extra == 'dev'
-Requires-Dist: climetlab >=0.23.2 ; extra == 'dev'
+Requires-Dist: earthkit-data[mars] >=0.9 ; extra == 'dev'
+Requires-Dist: earthkit-geo >=0.2 ; extra == 'dev'
 Requires-Dist: earthkit-meteo ; extra == 'dev'
 Requires-Dist: ecmwflibs >=0.6.3 ; extra == 'dev'
 Requires-Dist: entrypoints ; extra == 'dev'
+Requires-Dist: gcsfs ; extra == 'dev'
+Requires-Dist: kerchunk ; extra == 'dev'
 Requires-Dist: nbsphinx ; extra == 'dev'
 Requires-Dist: pandoc ; extra == 'dev'
 Requires-Dist: pyproj ; extra == 'dev'
 Requires-Dist: pytest ; extra == 'dev'
 Requires-Dist: requests ; extra == 'dev'
+Requires-Dist: rstfmt ; extra == 'dev'
 Requires-Dist: s3fs ; extra == 'dev'
 Requires-Dist: sphinx ; extra == 'dev'
-Requires-Dist: sphinx-argparse ; extra == 'dev'
+Requires-Dist: sphinx-argparse <0.5 ; extra == 'dev'
 Requires-Dist: sphinx-rtd-theme ; extra == 'dev'
 Provides-Extra: docs
 Requires-Dist: nbsphinx ; extra == 'docs'
 Requires-Dist: pandoc ; extra == 'docs'
+Requires-Dist: rstfmt ; extra == 'docs'
 Requires-Dist: sphinx ; extra == 'docs'
-Requires-Dist: sphinx-argparse ; extra == 'docs'
+Requires-Dist: sphinx-argparse <0.5 ; extra == 'docs'
 Requires-Dist: sphinx-rtd-theme ; extra == 'docs'
+Provides-Extra: kerchunk
+Requires-Dist: gcsfs ; extra == 'kerchunk'
+Requires-Dist: kerchunk ; extra == 'kerchunk'
+Requires-Dist: s3fs ; extra == 'kerchunk'
 Provides-Extra: remote
+Requires-Dist: aiohttp ; extra == 'remote'
 Requires-Dist: boto3 ; extra == 'remote'
 Requires-Dist: requests ; extra == 'remote'
 Requires-Dist: s3fs ; extra == 'remote'

anemoi_datasets-0.4.2.dist-info/RECORD

@@ -0,0 +1,86 @@
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+anemoi/datasets/__main__.py,sha256=cLA2PidDTOUHaDGzd0_E5iioKYNe-PSTv567Y2fuwQk,723
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+anemoi/datasets/grids.py,sha256=3YBMMJodgYhavarXPAlMZHaMtDT9v2IbTmAXZTqf8Qo,8481
+anemoi/datasets/commands/__init__.py,sha256=qAybFZPBBQs0dyx7dZ3X5JsLpE90pwrqt1vSV7cqEIw,706
+anemoi/datasets/commands/compare.py,sha256=svEhyR7pOS1847_RJr1I6vF7ZDPB9AVlcrhy_gxQVms,3263
+anemoi/datasets/commands/copy.py,sha256=SxAeN51owyN5gwtwpt30xhJSIJRlJb9YOUt_4K4m-D8,11780
+anemoi/datasets/commands/create.py,sha256=iAXm7b1zeFEbVyTSqgSdCXwYtgIi8XUN96muv-btC0w,3868
+anemoi/datasets/commands/inspect.py,sha256=rEBzR5LmrPzkNrlGS471Q7Ma9O8Djiml2mxAlxvSl0U,18676
+anemoi/datasets/commands/scan.py,sha256=MaTdne4JrtlqO3LhOUr43DZhZ6O-RZwC7uQ7C6PG7Os,2910
+anemoi/datasets/compute/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+anemoi/datasets/compute/recentre.py,sha256=oIqhENljB9ad-wnMJCJ3P0Xf1v76zQjqYCu1TuySgSI,4919
+anemoi/datasets/create/__init__.py,sha256=hnV_dOm9W4wbOD-dc_xYbZVbr2T03F_d1sWXWvZrCoU,6860
+anemoi/datasets/create/check.py,sha256=TAZOrq8QbS9F5kuR779FAuZPJXA7MXsS_DU1kVotq5Q,5838
+anemoi/datasets/create/chunks.py,sha256=1Inh3sIBn-2sNguErb-BsLns6W_HtDiOJAjIb29lp-U,2442
+anemoi/datasets/create/config.py,sha256=vZ-t50mHgrEnxJoaooWrZKzVGeEQrg__rCOrhi5Q4nU,7122
+anemoi/datasets/create/input.py,sha256=BJiGFR-imZcChdij3fodyz8XSHMUs-__ZfoCeMHuhUo,32472
+anemoi/datasets/create/loaders.py,sha256=tosx8Zms7OAEScw9JxHw6BLq6xZSDCNPYKeqFWP5O3Y,32504
+anemoi/datasets/create/patch.py,sha256=c8cWoqxFzcY9mKREosLjuQCUeJMJL6sbNNkoVvhCZDA,3800
+anemoi/datasets/create/persistent.py,sha256=wfNnNSY8VLO2EyEOQL9umI3sbQqETjJP7bPCiVF6Cko,4291
+anemoi/datasets/create/size.py,sha256=k4COEjs3wud0oKHH5P3n8Fap35xddXs002ucPjpBC88,1040
+anemoi/datasets/create/template.py,sha256=1t8EKGQcZGFUpgQw9a9oEy6ZWlfnow5e0vs1SOelUNc,3148
+anemoi/datasets/create/trace.py,sha256=J-8jDy28wNZa4aSV1KIQMwc1KolcoH3R2xjLl-_eLzM,2183
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+anemoi/datasets/create/functions/sources/xarray/grid.py,sha256=KSlhXj5dHeRQVeZd26CChMyC1iqYsH5XqxPC2VA_YJc,1169
+anemoi/datasets/create/functions/sources/xarray/metadata.py,sha256=tKMY7dYd8e6SGZM8wXH2OovfqSViePrnMVKrezD00cI,4757
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+anemoi/datasets/data/ensemble.py,sha256=AsP7Xx0ZHLoZs6a4EC0jtyGYIcOvZvvKXhgNsIvqIN8,1137
+anemoi/datasets/data/forwards.py,sha256=UZOOMUblGS21aaPoFfQa0ONSUaxkqlZQF3KGRhlCr9I,7899
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+anemoi/datasets/data/indexing.py,sha256=625m__JG5m_tDMrkz1hB6Vydenwt0oHuyAlc-o3Zwos,4799
+anemoi/datasets/data/join.py,sha256=dtCBbMTicqrRPxfBULi3RwEcQBLhQpIcvCjdN5A3XUU,4892
+anemoi/datasets/data/masked.py,sha256=czAv1ZfZ9q6Wr4RqI2Xj8SEm7yoCgJrwMl-CPDs_wSI,3857
+anemoi/datasets/data/misc.py,sha256=VgmsXgG-cjv1QQ0jclA8gJOiBqmR4QHbGrLhec73Y14,9995
+anemoi/datasets/data/select.py,sha256=Oje3KG1shRawjuBy2-GM8s_Nk_68l-uujvx5SGW0tUM,3781
+anemoi/datasets/data/statistics.py,sha256=lZCcKw9s7ttMBEp6ANyxtbXoZZvchhE7SClq-D4AUR8,1645
+anemoi/datasets/data/stores.py,sha256=LNCJBBQ--3ng4LGvdZ24ZXyOz7i15MvhtArt3_CxM_Q,11934
+anemoi/datasets/data/subset.py,sha256=9urVTXdnwCgqn0_BRYquMi8oiXn4ubAf0n4586hWfKw,3814
+anemoi/datasets/data/unchecked.py,sha256=xhdMg-ToI1UfBWHNsWyn1y2meZWngZtHx-33L0KqKp8,4037
+anemoi/datasets/dates/__init__.py,sha256=BRrwOapeP20tu7hN0m8hG04INp94tigwEfMClLl0ww4,4635
+anemoi/datasets/dates/groups.py,sha256=bYgw02eCLkjkZjJdyLpcFVMqtH8XO22cBdHOfG7tCBc,3471
+anemoi/datasets/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+anemoi_datasets-0.4.2.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+anemoi_datasets-0.4.2.dist-info/METADATA,sha256=-kRAN83lruvn32FG65PybzhrhoM6ewVOj4T6N0aLon8,16716
+anemoi_datasets-0.4.2.dist-info/WHEEL,sha256=Wyh-_nZ0DJYolHNn1_hMa4lM7uDedD_RGVwbmTjyItk,91
+anemoi_datasets-0.4.2.dist-info/entry_points.txt,sha256=yR-o-4uiPEA_GLBL81SkMYnUoxq3CAV3hHulQiRtGG0,66
+anemoi_datasets-0.4.2.dist-info/top_level.txt,sha256=DYn8VPs-fNwr7fNH9XIBqeXIwiYYd2E2k5-dUFFqUz0,7
+anemoi_datasets-0.4.2.dist-info/RECORD,,

{anemoi_datasets-0.3.10.dist-info → anemoi_datasets-0.4.2.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (70.1.1)
+Generator: setuptools (71.1.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

anemoi_datasets-0.3.10.dist-info/RECORD

@@ -1,73 +0,0 @@
-anemoi/datasets/__init__.py,sha256=Z1gqZWhecLcT0RZQqYBLlz01MUlUZd0kWEj_RavbITM,782
-anemoi/datasets/__main__.py,sha256=cLA2PidDTOUHaDGzd0_E5iioKYNe-PSTv567Y2fuwQk,723
-anemoi/datasets/_version.py,sha256=QTWoiVZ8kBQVv_3SZGJVwOxMqBDiTg3_qUjTLFx1eco,413
-anemoi/datasets/grids.py,sha256=3YBMMJodgYhavarXPAlMZHaMtDT9v2IbTmAXZTqf8Qo,8481
-anemoi/datasets/commands/__init__.py,sha256=qAybFZPBBQs0dyx7dZ3X5JsLpE90pwrqt1vSV7cqEIw,706
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