amd-gaia 0.14.3__py3-none-any.whl → 0.15.1__py3-none-any.whl

gaia/agents/code/tools/file_io.py

@@ -1,845 +1,845 @@
-#!/usr/bin/env python
-# Copyright(C) 2024-2025 Advanced Micro Devices, Inc. All rights reserved.
-# SPDX-License-Identifier: MIT
-"""
-File I/O tools mixin for code agents.
-
-This module provides a mixin class with file I/O operations that can be
-inherited by agents that need file manipulation capabilities.
-"""
-
-import ast
-import difflib
-import os
-from typing import Any, Dict, Optional
-
-from gaia.agents.base.tools import tool
-
-
-class FileIOToolsMixin:
-    """Mixin class providing file I/O tools for code agents.
-
-    This class provides a collection of file I/O operations as tools that can be
-    registered and used by agents. It includes reading, writing, editing, searching,
-    and diffing capabilities for Python files.
-
-    Attributes (provided by CodeAgent via ValidationAndParsingMixin):
-        _validate_python_syntax: Method to validate Python syntax
-        _parse_python_code: Method to parse Python code and extract structure
-
-    NOTE: This mixin expects the agent to also have ValidationAndParsingMixin
-    for _validate_python_syntax() and _parse_python_code() methods.
-    """
-
-    def register_file_io_tools(self) -> None:
-        """Register all file I/O tools."""
-
-        @tool
-        def read_file(file_path: str) -> Dict[str, Any]:
-            """Read any file and intelligently analyze based on file type.
-
-            Automatically detects file type and provides appropriate analysis:
-            - Python files (.py): Syntax validation + symbol extraction (functions/classes)
-            - Markdown files (.md): Headers + code blocks + links
-            - Other text files: Raw content
-
-            Args:
-                file_path: Path to the file to read
-
-            Returns:
-                Dictionary with file content and type-specific metadata
-            """
-            try:
-                # Security check
-                if not self.path_validator.is_path_allowed(file_path):
-                    return {
-                        "status": "error",
-                        "error": f"Access denied: {file_path} is not in allowed paths",
-                    }
-
-                if not os.path.exists(file_path):
-                    return {"status": "error", "error": f"File not found: {file_path}"}
-
-                # Read file content
-                try:
-                    with open(file_path, "r", encoding="utf-8") as f:
-                        content = f.read()
-                except UnicodeDecodeError:
-                    # Binary file
-                    with open(file_path, "rb") as f:
-                        content_bytes = f.read()
-                    return {
-                        "status": "success",
-                        "file_path": file_path,
-                        "file_type": "binary",
-                        "content": f"[Binary file, {len(content_bytes)} bytes]",
-                        "is_binary": True,
-                        "size_bytes": len(content_bytes),
-                    }
-
-                # Detect file type by extension
-                ext = os.path.splitext(file_path)[1].lower()
-
-                # Base result with common fields
-                result = {
-                    "status": "success",
-                    "file_path": file_path,
-                    "content": content,
-                    "line_count": len(content.splitlines()),
-                    "size_bytes": len(content.encode("utf-8")),
-                }
-
-                # Python file - add syntax validation and symbol extraction
-                if ext == ".py":
-                    import re
-
-                    result["file_type"] = "python"
-
-                    # Validate syntax using mixin method
-                    validation = self._validate_python_syntax(content)
-                    result["is_valid"] = validation["is_valid"]
-                    result["errors"] = validation.get("errors", [])
-
-                    # Extract symbols using mixin method
-                    if validation["is_valid"]:
-                        parsed = self._parse_python_code(content)
-                        # Handle both ParsedCode object and dict (for backward compat)
-                        if hasattr(parsed, "symbols"):
-                            result["symbols"] = [
-                                {"name": s.name, "type": s.type, "line": s.line}
-                                for s in parsed.symbols
-                            ]
-                        elif hasattr(parsed, "ast_tree"):
-                            # ParsedCode object
-                            tree = parsed.ast_tree
-                            symbols = []
-                            for node in ast.walk(tree):
-                                if isinstance(
-                                    node, (ast.FunctionDef, ast.AsyncFunctionDef)
-                                ):
-                                    symbols.append(
-                                        {
-                                            "name": node.name,
-                                            "type": "function",
-                                            "line": node.lineno,
-                                        }
-                                    )
-                                elif isinstance(node, ast.ClassDef):
-                                    symbols.append(
-                                        {
-                                            "name": node.name,
-                                            "type": "class",
-                                            "line": node.lineno,
-                                        }
-                                    )
-                            result["symbols"] = symbols
-
-                # Markdown file - extract structure
-                elif ext == ".md":
-                    import re
-
-                    result["file_type"] = "markdown"
-
-                    # Extract headers
-                    headers = re.findall(r"^#{1,6}\s+(.+)$", content, re.MULTILINE)
-                    result["headers"] = headers
-
-                    # Extract code blocks
-                    code_blocks = re.findall(r"```(\w*)\n(.*?)```", content, re.DOTALL)
-                    result["code_blocks"] = [
-                        {"language": lang, "code": code} for lang, code in code_blocks
-                    ]
-
-                    # Extract links
-                    links = re.findall(r"\[([^\]]+)\]\(([^)]+)\)", content)
-                    result["links"] = [
-                        {"text": text, "url": url} for text, url in links
-                    ]
-
-                # Other text files
-                else:
-                    result["file_type"] = ext[1:] if ext else "text"
-
-                return result
-
-            except Exception as e:
-                return {"status": "error", "error": str(e)}
-
-        @tool
-        def write_python_file(
-            file_path: str,
-            content: str,
-            validate: bool = True,
-            create_dirs: bool = True,
-        ) -> Dict[str, Any]:
-            """Write Python code to a file.
-
-            Args:
-                file_path: Path where to write the file
-                content: Python code content
-                validate: Whether to validate syntax before writing
-                create_dirs: Whether to create parent directories
-
-            Returns:
-                Dictionary with write operation results
-            """
-            try:
-                # Validate syntax if requested (using mixin method)
-                if validate:
-                    validation = self._validate_python_syntax(content)
-                    if not validation["is_valid"]:
-                        return {
-                            "status": "error",
-                            "error": "Invalid Python syntax",
-                            "syntax_errors": validation.get("errors", []),
-                        }
-
-                # Security check
-                if not self.path_validator.is_path_allowed(file_path):
-                    return {
-                        "status": "error",
-                        "error": f"Access denied: {file_path} is not in allowed paths",
-                    }
-
-                # Create parent directories if needed
-                if create_dirs and os.path.dirname(file_path):
-                    os.makedirs(os.path.dirname(file_path), exist_ok=True)
-
-                # Write the file
-                with open(file_path, "w", encoding="utf-8") as f:
-                    f.write(content)
-
-                return {
-                    "status": "success",
-                    "file_path": file_path,
-                    "bytes_written": len(content.encode("utf-8")),
-                    "line_count": len(content.splitlines()),
-                }
-            except Exception as e:
-                return {"status": "error", "error": str(e)}
-
-        @tool
-        def edit_python_file(
-            file_path: str,
-            old_content: str,
-            new_content: str,
-            backup: bool = True,
-            dry_run: bool = False,
-        ) -> Dict[str, Any]:
-            """Edit a Python file by replacing content.
-
-            Args:
-                file_path: Path to the file to edit
-                old_content: Content to find and replace
-                new_content: New content to insert
-                backup: Whether to create a backup
-                dry_run: Whether to only simulate the edit
-
-            Returns:
-                Dictionary with edit operation results
-            """
-            try:
-                # Security check
-                if not self.path_validator.is_path_allowed(file_path):
-                    return {
-                        "status": "error",
-                        "error": f"Access denied: {file_path} is not in allowed paths",
-                    }
-
-                # Read current content
-                if not os.path.exists(file_path):
-                    return {"status": "error", "error": f"File not found: {file_path}"}
-
-                with open(file_path, "r", encoding="utf-8") as f:
-                    current_content = f.read()
-
-                # Check if old content exists
-                if old_content not in current_content:
-                    return {
-                        "status": "error",
-                        "error": "Content to replace not found in file",
-                    }
-
-                # Create new content
-                modified_content = current_content.replace(old_content, new_content, 1)
-
-                # Validate new content (using mixin method)
-                validation = self._validate_python_syntax(modified_content)
-                if not validation["is_valid"]:
-                    return {
-                        "status": "error",
-                        "error": "Edit would result in invalid Python syntax",
-                        "syntax_errors": validation.get("errors", []),
-                    }
-
-                # Generate diff
-                diff = "\n".join(
-                    difflib.unified_diff(
-                        current_content.splitlines(keepends=True),
-                        modified_content.splitlines(keepends=True),
-                        fromfile=file_path,
-                        tofile=file_path,
-                    )
-                )
-
-                if dry_run:
-                    return {
-                        "status": "success",
-                        "dry_run": True,
-                        "diff": diff,
-                        "would_change": current_content != modified_content,
-                    }
-
-                # Create backup if requested
-                if backup:
-                    backup_path = f"{file_path}.bak"
-                    with open(backup_path, "w", encoding="utf-8") as f:
-                        f.write(current_content)
-
-                # Write the modified content
-                with open(file_path, "w", encoding="utf-8") as f:
-                    f.write(modified_content)
-
-                return {
-                    "status": "success",
-                    "file_path": file_path,
-                    "diff": diff,
-                    "backup_created": backup,
-                }
-            except Exception as e:
-                return {"status": "error", "error": str(e)}
-
-        @tool
-        def search_code(
-            directory: str = ".",
-            pattern: str = "",
-            file_extension: str = ".py",
-            max_results: int = 100,
-        ) -> Dict[str, Any]:
-            """Search for patterns in code files.
-
-            Args:
-                directory: Directory to search in
-                pattern: Pattern to search for
-                file_extension: File extension to filter
-                max_results: Maximum number of results
-
-            Returns:
-                Dictionary with search results
-            """
-            try:
-                # Security check
-                if not self.path_validator.is_path_allowed(directory):
-                    return {
-                        "status": "error",
-                        "error": f"Access denied: {directory} is not in allowed paths",
-                    }
-
-                results = []
-                files_searched = 0
-                files_with_matches = 0
-
-                for root, _, files in os.walk(directory):
-                    for file in files:
-                        if not file.endswith(file_extension):
-                            continue
-
-                        file_path = os.path.join(root, file)
-                        files_searched += 1
-
-                        try:
-                            with open(file_path, "r", encoding="utf-8") as f:
-                                content = f.read()
-
-                            if pattern in content:
-                                files_with_matches += 1
-                                # Find line numbers with matches
-                                matches = []
-                                for i, line in enumerate(content.splitlines(), 1):
-                                    if pattern in line:
-                                        matches.append(
-                                            {"line": i, "content": line.strip()}
-                                        )
-
-                                results.append(
-                                    {
-                                        "file": os.path.relpath(file_path, directory),
-                                        "matches": matches[
-                                            :10
-                                        ],  # Limit matches per file
-                                    }
-                                )
-
-                                if len(results) >= max_results:
-                                    break
-                        except Exception:
-                            continue
-
-                    if len(results) >= max_results:
-                        break
-
-                return {
-                    "status": "success",
-                    "pattern": pattern,
-                    "directory": directory,
-                    "files_searched": files_searched,
-                    "files_with_matches": files_with_matches,
-                    "results": results,
-                }
-            except Exception as e:
-                return {"status": "error", "error": str(e)}
-
-        @tool
-        def generate_diff(
-            file_path: str, new_content: str, context_lines: int = 3
-        ) -> Dict[str, Any]:
-            """Generate a unified diff for a file.
-
-            Args:
-                file_path: Path to the original file
-                new_content: New content to compare
-                context_lines: Number of context lines in diff
-
-            Returns:
-                Dictionary with diff information
-            """
-            try:
-                # Security check
-                if not self.path_validator.is_path_allowed(file_path):
-                    return {
-                        "status": "error",
-                        "error": f"Access denied: {file_path} is not in allowed paths",
-                    }
-
-                # Read original content
-                if os.path.exists(file_path):
-                    with open(file_path, "r", encoding="utf-8") as f:
-                        original_content = f.read()
-                else:
-                    original_content = ""
-
-                # Generate unified diff
-                diff = list(
-                    difflib.unified_diff(
-                        original_content.splitlines(keepends=True),
-                        new_content.splitlines(keepends=True),
-                        fromfile=file_path,
-                        tofile=file_path,
-                        n=context_lines,
-                    )
-                )
-
-                # Count changes
-                additions = sum(
-                    1
-                    for line in diff
-                    if line.startswith("+") and not line.startswith("+++")
-                )
-                deletions = sum(
-                    1
-                    for line in diff
-                    if line.startswith("-") and not line.startswith("---")
-                )
-
-                return {
-                    "status": "success",
-                    "file_path": file_path,
-                    "diff": "".join(diff),
-                    "additions": additions,
-                    "deletions": deletions,
-                    "has_changes": bool(diff),
-                }
-            except Exception as e:
-                return {"status": "error", "error": str(e)}
-
-        @tool
-        def write_markdown_file(
-            file_path: str, content: str, create_dirs: bool = True
-        ) -> Dict[str, Any]:
-            """Write content to a markdown file.
-
-            Args:
-                file_path: Path where to write the file
-                content: Markdown content
-                create_dirs: Whether to create parent directories
-
-            Returns:
-                Dictionary with write operation results
-            """
-            try:
-                # Security check
-                if not self.path_validator.is_path_allowed(file_path):
-                    return {
-                        "status": "error",
-                        "error": f"Access denied: {file_path} is not in allowed paths",
-                    }
-
-                # Create parent directories if needed
-                if create_dirs:
-                    os.makedirs(os.path.dirname(file_path), exist_ok=True)
-
-                # Write the file
-                with open(file_path, "w", encoding="utf-8") as f:
-                    f.write(content)
-
-                return {
-                    "status": "success",
-                    "file_path": file_path,
-                    "bytes_written": len(content.encode("utf-8")),
-                    "line_count": len(content.splitlines()),
-                }
-            except Exception as e:
-                return {"status": "error", "error": str(e)}
-
-        @tool
-        def write_file(
-            file_path: str,
-            content: str,
-            create_dirs: bool = True,
-            project_dir: Optional[str] = None,
-        ) -> Dict[str, Any]:
-            """Write content to any file (TypeScript, JavaScript, JSON, etc.) without syntax validation.
-
-            Use this tool for non-Python files like .tsx, .ts, .js, .json, etc.
-
-            Args:
-                file_path: Path where to write the file
-                content: Content to write to the file
-                create_dirs: Whether to create parent directories if they don't exist
-                project_dir: Project root directory for resolving relative paths
-
-            Returns:
-                dict: Status and file information
-            """
-            try:
-                from pathlib import Path
-
-                path = Path(file_path)
-                if project_dir:
-                    base = Path(project_dir).resolve()
-                    if not path.is_absolute():
-                        path = base / path
-                path = path.resolve()
-
-                # Create parent directories if requested
-                if create_dirs and not path.parent.exists():
-                    path.parent.mkdir(parents=True, exist_ok=True)
-
-                # Write content to file
-                path.write_text(content, encoding="utf-8")
-
-                console = getattr(self, "console", None)
-                if console:
-                    if content.strip():
-                        console.print_prompt(
-                            content,
-                            title=f"✏️ write_file → {path}",
-                        )
-                    else:
-                        console.print_info(
-                            f"write_file: {path} was created but no content was written."
-                        )
-
-                return {
-                    "status": "success",
-                    "file_path": str(path),
-                    "size_bytes": len(content),
-                    "file_type": path.suffix[1:] if path.suffix else "unknown",
-                }
-            except Exception as e:
-                return {"status": "error", "error": str(e)}
-
-        @tool
-        def edit_file(
-            file_path: str,
-            old_content: str,
-            new_content: str,
-            project_dir: Optional[str] = None,
-        ) -> Dict[str, Any]:
-            """Edit any file by replacing old content with new content (no syntax validation).
-
-            Use this tool for non-Python files like .tsx, .ts, .js, .json, etc.
-
-            Args:
-                file_path: Path to the file to edit
-                old_content: Exact content to find and replace
-                new_content: New content to replace with
-                project_dir: Project root directory for resolving relative paths
-
-            Returns:
-                dict: Status and edit information
-            """
-            try:
-                from pathlib import Path
-
-                path = Path(file_path)
-                if project_dir:
-                    base = Path(project_dir).resolve()
-                    if not path.is_absolute():
-                        path = base / path
-                path = path.resolve()
-
-                if not path.exists():
-                    return {"status": "error", "error": f"File not found: {file_path}"}
-
-                # Read current content
-                current_content = path.read_text(encoding="utf-8")
-
-                # Check if old_content exists in file
-                if old_content not in current_content:
-                    return {
-                        "status": "error",
-                        "error": f"Content to replace not found in {file_path}",
-                    }
-
-                # Replace content
-                updated_content = current_content.replace(old_content, new_content, 1)
-
-                # Generate diff before writing
-                diff = "\n".join(
-                    difflib.unified_diff(
-                        current_content.splitlines(keepends=True),
-                        updated_content.splitlines(keepends=True),
-                        fromfile=f"a/{os.path.basename(str(path))}",
-                        tofile=f"b/{os.path.basename(str(path))}",
-                        lineterm="",
-                    )
-                )
-
-                # Write updated content
-                path.write_text(updated_content, encoding="utf-8")
-
-                console = getattr(self, "console", None)
-                if console:
-                    if diff.strip():
-                        console.print_diff(diff, os.path.basename(str(path)))
-                    else:
-                        console.print_info(f"edit_file: No changes were made to {path}")
-
-                return {
-                    "status": "success",
-                    "file_path": str(path),
-                    "old_size": len(current_content),
-                    "new_size": len(updated_content),
-                    "file_type": path.suffix[1:] if path.suffix else "unknown",
-                    "diff": diff,
-                }
-            except Exception as e:
-                return {"status": "error", "error": str(e)}
-
-        @tool
-        def update_gaia_md(
-            project_root: str = ".",
-            project_name: str = None,
-            description: str = None,
-            structure: Dict[str, Any] = None,
-            instructions: str = None,
-        ) -> Dict[str, Any]:
-            """Create or update GAIA.md file for project context.
-
-            Args:
-                project_root: Root directory of the project
-                project_name: Name of the project
-                description: Project description
-                structure: Project structure dictionary
-                instructions: Special instructions for GAIA
-
-            Returns:
-                Dictionary with update results
-            """
-            try:
-                from datetime import datetime
-
-                gaia_path = os.path.join(project_root, "GAIA.md")
-
-                # Security check
-                if not self.path_validator.is_path_allowed(gaia_path):
-                    return {
-                        "status": "error",
-                        "error": f"Access denied: {gaia_path} is not in allowed paths",
-                    }
-
-                # Start building content
-                content = "# GAIA.md\n\n"
-                content += "This file provides guidance to GAIA Code Agent when working with code in this project.\n\n"
-
-                if project_name:
-                    content += f"## Project: {project_name}\n\n"
-
-                if description:
-                    content += f"## Description\n{description}\n\n"
-
-                content += f"**Last Updated:** {datetime.now().isoformat()}\n\n"
-
-                if structure:
-                    content += "## Project Structure\n```\n"
-
-                    def format_structure(struct, indent=""):
-                        result = ""
-                        if isinstance(struct, dict):
-                            for key, value in struct.items():
-                                if isinstance(value, dict):
-                                    result += f"{indent}{key}\n"
-                                    result += format_structure(value, indent + "  ")
-                                else:
-                                    result += f"{indent}{key} - {value}\n"
-                        return result
-
-                    content += format_structure(structure)
-                    content += "```\n\n"
-
-                if instructions:
-                    content += f"## Special Instructions\n{instructions}\n\n"
-
-                # Add default sections
-                content += "## Development Guidelines\n"
-                content += "- Follow PEP 8 style guidelines\n"
-                content += "- Add docstrings to all functions and classes\n"
-                content += "- Include type hints where appropriate\n"
-                content += "- Write unit tests for new functionality\n\n"
-
-                content += "## Code Quality\n"
-                content += "- All code should pass pylint checks\n"
-                content += "- Use Black formatter for consistent style\n"
-                content += "- Ensure proper error handling\n\n"
-
-                # Write the file
-                with open(gaia_path, "w", encoding="utf-8") as f:
-                    f.write(content)
-
-                return {
-                    "status": "success",
-                    "file_path": gaia_path,
-                    "created": not os.path.exists(gaia_path),
-                    "message": f"GAIA.md {'created' if not os.path.exists(gaia_path) else 'updated'} at {gaia_path}",
-                }
-            except Exception as e:
-                return {"status": "error", "error": str(e)}
-
-        @tool
-        def replace_function(
-            file_path: str,
-            function_name: str,
-            new_implementation: str,
-            backup: bool = True,
-        ) -> Dict[str, Any]:
-            """Replace a specific function in a Python file.
-
-            Args:
-                file_path: Path to the Python file
-                function_name: Name of the function to replace
-                new_implementation: New function implementation
-                backup: Whether to create backup
-
-            Returns:
-                Dictionary with replacement result
-            """
-            try:
-                # Security check
-                if not self.path_validator.is_path_allowed(file_path):
-                    return {
-                        "status": "error",
-                        "error": f"Access denied: {file_path} is not in allowed paths",
-                    }
-
-                if not os.path.exists(file_path):
-                    return {"status": "error", "error": f"File not found: {file_path}"}
-
-                with open(file_path, "r", encoding="utf-8") as f:
-                    content = f.read()
-
-                # Parse the file to find the function
-                try:
-                    tree = ast.parse(content)
-                except SyntaxError as e:
-                    return {"status": "error", "error": f"File has syntax errors: {e}"}
-
-                # Find the function node
-                function_node = None
-                for node in ast.walk(tree):
-                    if isinstance(node, (ast.FunctionDef, ast.AsyncFunctionDef)):
-                        if node.name == function_name:
-                            function_node = node
-                            break
-
-                if not function_node:
-                    return {
-                        "status": "error",
-                        "error": f"Function '{function_name}' not found in file",
-                    }
-
-                # Get line range of the function
-                lines = content.splitlines(keepends=True)
-                start_line = function_node.lineno - 1
-
-                # Find end of function (simplified - finds next def or class at same indent)
-                end_line = len(lines)
-                indent_level = len(lines[start_line]) - len(lines[start_line].lstrip())
-
-                for i in range(start_line + 1, len(lines)):
-                    line = lines[i]
-                    if line.strip() and not line.lstrip().startswith("#"):
-                        current_indent = len(line) - len(line.lstrip())
-                        if current_indent <= indent_level and line.strip():
-                            if line.lstrip().startswith(
-                                ("def ", "class ", "async def ")
-                            ):
-                                end_line = i
-                                break
-
-                # Create backup if requested
-                if backup:
-                    backup_path = f"{file_path}.bak"
-                    with open(backup_path, "w", encoding="utf-8") as f:
-                        f.write(content)
-
-                # Replace the function
-                new_lines = (
-                    lines[:start_line] + [new_implementation + "\n"] + lines[end_line:]
-                )
-                modified_content = "".join(new_lines)
-
-                # Validate new content (using mixin method)
-                validation = self._validate_python_syntax(modified_content)
-                if not validation["is_valid"]:
-                    return {
-                        "status": "error",
-                        "error": "Replacement would result in invalid syntax",
-                        "syntax_errors": validation.get("errors", []),
-                    }
-
-                # Write the modified content
-                with open(file_path, "w", encoding="utf-8") as f:
-                    f.write(modified_content)
-
-                # Generate diff
-                diff = "\n".join(
-                    difflib.unified_diff(
-                        content.splitlines(keepends=True),
-                        modified_content.splitlines(keepends=True),
-                        fromfile=file_path,
-                        tofile=file_path,
-                    )
-                )
-
-                return {
-                    "status": "success",
-                    "file_path": file_path,
-                    "function_replaced": function_name,
-                    "backup_path": backup_path if backup else None,
-                    "diff": diff,
-                }
-            except Exception as e:
-                return {"status": "error", "error": str(e)}
-
-        # Return the list of registered tools for tracking
-        return [
-            "read_file",
-            "write_python_file",
-            "edit_python_file",
-            "search_code",
-            "generate_diff",
-            "write_markdown_file",
-            "update_gaia_md",
-            "replace_function",
-        ]
+#!/usr/bin/env python
+# Copyright(C) 2024-2025 Advanced Micro Devices, Inc. All rights reserved.
+# SPDX-License-Identifier: MIT
+"""
+File I/O tools mixin for code agents.
+
+This module provides a mixin class with file I/O operations that can be
+inherited by agents that need file manipulation capabilities.
+"""
+
+import ast
+import difflib
+import os
+from typing import Any, Dict, Optional
+
+from gaia.agents.base.tools import tool
+
+
+class FileIOToolsMixin:
+    """Mixin class providing file I/O tools for code agents.
+
+    This class provides a collection of file I/O operations as tools that can be
+    registered and used by agents. It includes reading, writing, editing, searching,
+    and diffing capabilities for Python files.
+
+    Attributes (provided by CodeAgent via ValidationAndParsingMixin):
+        _validate_python_syntax: Method to validate Python syntax
+        _parse_python_code: Method to parse Python code and extract structure
+
+    NOTE: This mixin expects the agent to also have ValidationAndParsingMixin
+    for _validate_python_syntax() and _parse_python_code() methods.
+    """
+
+    def register_file_io_tools(self) -> None:
+        """Register all file I/O tools."""
+
+        @tool
+        def read_file(file_path: str) -> Dict[str, Any]:
+            """Read any file and intelligently analyze based on file type.
+
+            Automatically detects file type and provides appropriate analysis:
+            - Python files (.py): Syntax validation + symbol extraction (functions/classes)
+            - Markdown files (.md): Headers + code blocks + links
+            - Other text files: Raw content
+
+            Args:
+                file_path: Path to the file to read
+
+            Returns:
+                Dictionary with file content and type-specific metadata
+            """
+            try:
+                # Security check
+                if not self.path_validator.is_path_allowed(file_path):
+                    return {
+                        "status": "error",
+                        "error": f"Access denied: {file_path} is not in allowed paths",
+                    }
+
+                if not os.path.exists(file_path):
+                    return {"status": "error", "error": f"File not found: {file_path}"}
+
+                # Read file content
+                try:
+                    with open(file_path, "r", encoding="utf-8") as f:
+                        content = f.read()
+                except UnicodeDecodeError:
+                    # Binary file
+                    with open(file_path, "rb") as f:
+                        content_bytes = f.read()
+                    return {
+                        "status": "success",
+                        "file_path": file_path,
+                        "file_type": "binary",
+                        "content": f"[Binary file, {len(content_bytes)} bytes]",
+                        "is_binary": True,
+                        "size_bytes": len(content_bytes),
+                    }
+
+                # Detect file type by extension
+                ext = os.path.splitext(file_path)[1].lower()
+
+                # Base result with common fields
+                result = {
+                    "status": "success",
+                    "file_path": file_path,
+                    "content": content,
+                    "line_count": len(content.splitlines()),
+                    "size_bytes": len(content.encode("utf-8")),
+                }
+
+                # Python file - add syntax validation and symbol extraction
+                if ext == ".py":
+                    import re
+
+                    result["file_type"] = "python"
+
+                    # Validate syntax using mixin method
+                    validation = self._validate_python_syntax(content)
+                    result["is_valid"] = validation["is_valid"]
+                    result["errors"] = validation.get("errors", [])
+
+                    # Extract symbols using mixin method
+                    if validation["is_valid"]:
+                        parsed = self._parse_python_code(content)
+                        # Handle both ParsedCode object and dict (for backward compat)
+                        if hasattr(parsed, "symbols"):
+                            result["symbols"] = [
+                                {"name": s.name, "type": s.type, "line": s.line}
+                                for s in parsed.symbols
+                            ]
+                        elif hasattr(parsed, "ast_tree"):
+                            # ParsedCode object
+                            tree = parsed.ast_tree
+                            symbols = []
+                            for node in ast.walk(tree):
+                                if isinstance(
+                                    node, (ast.FunctionDef, ast.AsyncFunctionDef)
+                                ):
+                                    symbols.append(
+                                        {
+                                            "name": node.name,
+                                            "type": "function",
+                                            "line": node.lineno,
+                                        }
+                                    )
+                                elif isinstance(node, ast.ClassDef):
+                                    symbols.append(
+                                        {
+                                            "name": node.name,
+                                            "type": "class",
+                                            "line": node.lineno,
+                                        }
+                                    )
+                            result["symbols"] = symbols
+
+                # Markdown file - extract structure
+                elif ext == ".md":
+                    import re
+
+                    result["file_type"] = "markdown"
+
+                    # Extract headers
+                    headers = re.findall(r"^#{1,6}\s+(.+)$", content, re.MULTILINE)
+                    result["headers"] = headers
+
+                    # Extract code blocks
+                    code_blocks = re.findall(r"```(\w*)\n(.*?)```", content, re.DOTALL)
+                    result["code_blocks"] = [
+                        {"language": lang, "code": code} for lang, code in code_blocks
+                    ]
+
+                    # Extract links
+                    links = re.findall(r"\[([^\]]+)\]\(([^)]+)\)", content)
+                    result["links"] = [
+                        {"text": text, "url": url} for text, url in links
+                    ]
+
+                # Other text files
+                else:
+                    result["file_type"] = ext[1:] if ext else "text"
+
+                return result
+
+            except Exception as e:
+                return {"status": "error", "error": str(e)}
+
+        @tool
+        def write_python_file(
+            file_path: str,
+            content: str,
+            validate: bool = True,
+            create_dirs: bool = True,
+        ) -> Dict[str, Any]:
+            """Write Python code to a file.
+
+            Args:
+                file_path: Path where to write the file
+                content: Python code content
+                validate: Whether to validate syntax before writing
+                create_dirs: Whether to create parent directories
+
+            Returns:
+                Dictionary with write operation results
+            """
+            try:
+                # Validate syntax if requested (using mixin method)
+                if validate:
+                    validation = self._validate_python_syntax(content)
+                    if not validation["is_valid"]:
+                        return {
+                            "status": "error",
+                            "error": "Invalid Python syntax",
+                            "syntax_errors": validation.get("errors", []),
+                        }
+
+                # Security check
+                if not self.path_validator.is_path_allowed(file_path):
+                    return {
+                        "status": "error",
+                        "error": f"Access denied: {file_path} is not in allowed paths",
+                    }
+
+                # Create parent directories if needed
+                if create_dirs and os.path.dirname(file_path):
+                    os.makedirs(os.path.dirname(file_path), exist_ok=True)
+
+                # Write the file
+                with open(file_path, "w", encoding="utf-8") as f:
+                    f.write(content)
+
+                return {
+                    "status": "success",
+                    "file_path": file_path,
+                    "bytes_written": len(content.encode("utf-8")),
+                    "line_count": len(content.splitlines()),
+                }
+            except Exception as e:
+                return {"status": "error", "error": str(e)}
+
+        @tool
+        def edit_python_file(
+            file_path: str,
+            old_content: str,
+            new_content: str,
+            backup: bool = True,
+            dry_run: bool = False,
+        ) -> Dict[str, Any]:
+            """Edit a Python file by replacing content.
+
+            Args:
+                file_path: Path to the file to edit
+                old_content: Content to find and replace
+                new_content: New content to insert
+                backup: Whether to create a backup
+                dry_run: Whether to only simulate the edit
+
+            Returns:
+                Dictionary with edit operation results
+            """
+            try:
+                # Security check
+                if not self.path_validator.is_path_allowed(file_path):
+                    return {
+                        "status": "error",
+                        "error": f"Access denied: {file_path} is not in allowed paths",
+                    }
+
+                # Read current content
+                if not os.path.exists(file_path):
+                    return {"status": "error", "error": f"File not found: {file_path}"}
+
+                with open(file_path, "r", encoding="utf-8") as f:
+                    current_content = f.read()
+
+                # Check if old content exists
+                if old_content not in current_content:
+                    return {
+                        "status": "error",
+                        "error": "Content to replace not found in file",
+                    }
+
+                # Create new content
+                modified_content = current_content.replace(old_content, new_content, 1)
+
+                # Validate new content (using mixin method)
+                validation = self._validate_python_syntax(modified_content)
+                if not validation["is_valid"]:
+                    return {
+                        "status": "error",
+                        "error": "Edit would result in invalid Python syntax",
+                        "syntax_errors": validation.get("errors", []),
+                    }
+
+                # Generate diff
+                diff = "\n".join(
+                    difflib.unified_diff(
+                        current_content.splitlines(keepends=True),
+                        modified_content.splitlines(keepends=True),
+                        fromfile=file_path,
+                        tofile=file_path,
+                    )
+                )
+
+                if dry_run:
+                    return {
+                        "status": "success",
+                        "dry_run": True,
+                        "diff": diff,
+                        "would_change": current_content != modified_content,
+                    }
+
+                # Create backup if requested
+                if backup:
+                    backup_path = f"{file_path}.bak"
+                    with open(backup_path, "w", encoding="utf-8") as f:
+                        f.write(current_content)
+
+                # Write the modified content
+                with open(file_path, "w", encoding="utf-8") as f:
+                    f.write(modified_content)
+
+                return {
+                    "status": "success",
+                    "file_path": file_path,
+                    "diff": diff,
+                    "backup_created": backup,
+                }
+            except Exception as e:
+                return {"status": "error", "error": str(e)}
+
+        @tool
+        def search_code(
+            directory: str = ".",
+            pattern: str = "",
+            file_extension: str = ".py",
+            max_results: int = 100,
+        ) -> Dict[str, Any]:
+            """Search for patterns in code files.
+
+            Args:
+                directory: Directory to search in
+                pattern: Pattern to search for
+                file_extension: File extension to filter
+                max_results: Maximum number of results
+
+            Returns:
+                Dictionary with search results
+            """
+            try:
+                # Security check
+                if not self.path_validator.is_path_allowed(directory):
+                    return {
+                        "status": "error",
+                        "error": f"Access denied: {directory} is not in allowed paths",
+                    }
+
+                results = []
+                files_searched = 0
+                files_with_matches = 0
+
+                for root, _, files in os.walk(directory):
+                    for file in files:
+                        if not file.endswith(file_extension):
+                            continue
+
+                        file_path = os.path.join(root, file)
+                        files_searched += 1
+
+                        try:
+                            with open(file_path, "r", encoding="utf-8") as f:
+                                content = f.read()
+
+                            if pattern in content:
+                                files_with_matches += 1
+                                # Find line numbers with matches
+                                matches = []
+                                for i, line in enumerate(content.splitlines(), 1):
+                                    if pattern in line:
+                                        matches.append(
+                                            {"line": i, "content": line.strip()}
+                                        )
+
+                                results.append(
+                                    {
+                                        "file": os.path.relpath(file_path, directory),
+                                        "matches": matches[
+                                            :10
+                                        ],  # Limit matches per file
+                                    }
+                                )
+
+                                if len(results) >= max_results:
+                                    break
+                        except Exception:
+                            continue
+
+                    if len(results) >= max_results:
+                        break
+
+                return {
+                    "status": "success",
+                    "pattern": pattern,
+                    "directory": directory,
+                    "files_searched": files_searched,
+                    "files_with_matches": files_with_matches,
+                    "results": results,
+                }
+            except Exception as e:
+                return {"status": "error", "error": str(e)}
+
+        @tool
+        def generate_diff(
+            file_path: str, new_content: str, context_lines: int = 3
+        ) -> Dict[str, Any]:
+            """Generate a unified diff for a file.
+
+            Args:
+                file_path: Path to the original file
+                new_content: New content to compare
+                context_lines: Number of context lines in diff
+
+            Returns:
+                Dictionary with diff information
+            """
+            try:
+                # Security check
+                if not self.path_validator.is_path_allowed(file_path):
+                    return {
+                        "status": "error",
+                        "error": f"Access denied: {file_path} is not in allowed paths",
+                    }
+
+                # Read original content
+                if os.path.exists(file_path):
+                    with open(file_path, "r", encoding="utf-8") as f:
+                        original_content = f.read()
+                else:
+                    original_content = ""
+
+                # Generate unified diff
+                diff = list(
+                    difflib.unified_diff(
+                        original_content.splitlines(keepends=True),
+                        new_content.splitlines(keepends=True),
+                        fromfile=file_path,
+                        tofile=file_path,
+                        n=context_lines,
+                    )
+                )
+
+                # Count changes
+                additions = sum(
+                    1
+                    for line in diff
+                    if line.startswith("+") and not line.startswith("+++")
+                )
+                deletions = sum(
+                    1
+                    for line in diff
+                    if line.startswith("-") and not line.startswith("---")
+                )
+
+                return {
+                    "status": "success",
+                    "file_path": file_path,
+                    "diff": "".join(diff),
+                    "additions": additions,
+                    "deletions": deletions,
+                    "has_changes": bool(diff),
+                }
+            except Exception as e:
+                return {"status": "error", "error": str(e)}
+
+        @tool
+        def write_markdown_file(
+            file_path: str, content: str, create_dirs: bool = True
+        ) -> Dict[str, Any]:
+            """Write content to a markdown file.
+
+            Args:
+                file_path: Path where to write the file
+                content: Markdown content
+                create_dirs: Whether to create parent directories
+
+            Returns:
+                Dictionary with write operation results
+            """
+            try:
+                # Security check
+                if not self.path_validator.is_path_allowed(file_path):
+                    return {
+                        "status": "error",
+                        "error": f"Access denied: {file_path} is not in allowed paths",
+                    }
+
+                # Create parent directories if needed
+                if create_dirs:
+                    os.makedirs(os.path.dirname(file_path), exist_ok=True)
+
+                # Write the file
+                with open(file_path, "w", encoding="utf-8") as f:
+                    f.write(content)
+
+                return {
+                    "status": "success",
+                    "file_path": file_path,
+                    "bytes_written": len(content.encode("utf-8")),
+                    "line_count": len(content.splitlines()),
+                }
+            except Exception as e:
+                return {"status": "error", "error": str(e)}
+
+        @tool
+        def write_file(
+            file_path: str,
+            content: str,
+            create_dirs: bool = True,
+            project_dir: Optional[str] = None,
+        ) -> Dict[str, Any]:
+            """Write content to any file (TypeScript, JavaScript, JSON, etc.) without syntax validation.
+
+            Use this tool for non-Python files like .tsx, .ts, .js, .json, etc.
+
+            Args:
+                file_path: Path where to write the file
+                content: Content to write to the file
+                create_dirs: Whether to create parent directories if they don't exist
+                project_dir: Project root directory for resolving relative paths
+
+            Returns:
+                dict: Status and file information
+            """
+            try:
+                from pathlib import Path
+
+                path = Path(file_path)
+                if project_dir:
+                    base = Path(project_dir).resolve()
+                    if not path.is_absolute():
+                        path = base / path
+                path = path.resolve()
+
+                # Create parent directories if requested
+                if create_dirs and not path.parent.exists():
+                    path.parent.mkdir(parents=True, exist_ok=True)
+
+                # Write content to file
+                path.write_text(content, encoding="utf-8")
+
+                console = getattr(self, "console", None)
+                if console:
+                    if content.strip():
+                        console.print_prompt(
+                            content,
+                            title=f"✏️ write_file → {path}",
+                        )
+                    else:
+                        console.print_info(
+                            f"write_file: {path} was created but no content was written."
+                        )
+
+                return {
+                    "status": "success",
+                    "file_path": str(path),
+                    "size_bytes": len(content),
+                    "file_type": path.suffix[1:] if path.suffix else "unknown",
+                }
+            except Exception as e:
+                return {"status": "error", "error": str(e)}
+
+        @tool
+        def edit_file(
+            file_path: str,
+            old_content: str,
+            new_content: str,
+            project_dir: Optional[str] = None,
+        ) -> Dict[str, Any]:
+            """Edit any file by replacing old content with new content (no syntax validation).
+
+            Use this tool for non-Python files like .tsx, .ts, .js, .json, etc.
+
+            Args:
+                file_path: Path to the file to edit
+                old_content: Exact content to find and replace
+                new_content: New content to replace with
+                project_dir: Project root directory for resolving relative paths
+
+            Returns:
+                dict: Status and edit information
+            """
+            try:
+                from pathlib import Path
+
+                path = Path(file_path)
+                if project_dir:
+                    base = Path(project_dir).resolve()
+                    if not path.is_absolute():
+                        path = base / path
+                path = path.resolve()
+
+                if not path.exists():
+                    return {"status": "error", "error": f"File not found: {file_path}"}
+
+                # Read current content
+                current_content = path.read_text(encoding="utf-8")
+
+                # Check if old_content exists in file
+                if old_content not in current_content:
+                    return {
+                        "status": "error",
+                        "error": f"Content to replace not found in {file_path}",
+                    }
+
+                # Replace content
+                updated_content = current_content.replace(old_content, new_content, 1)
+
+                # Generate diff before writing
+                diff = "\n".join(
+                    difflib.unified_diff(
+                        current_content.splitlines(keepends=True),
+                        updated_content.splitlines(keepends=True),
+                        fromfile=f"a/{os.path.basename(str(path))}",
+                        tofile=f"b/{os.path.basename(str(path))}",
+                        lineterm="",
+                    )
+                )
+
+                # Write updated content
+                path.write_text(updated_content, encoding="utf-8")
+
+                console = getattr(self, "console", None)
+                if console:
+                    if diff.strip():
+                        console.print_diff(diff, os.path.basename(str(path)))
+                    else:
+                        console.print_info(f"edit_file: No changes were made to {path}")
+
+                return {
+                    "status": "success",
+                    "file_path": str(path),
+                    "old_size": len(current_content),
+                    "new_size": len(updated_content),
+                    "file_type": path.suffix[1:] if path.suffix else "unknown",
+                    "diff": diff,
+                }
+            except Exception as e:
+                return {"status": "error", "error": str(e)}
+
+        @tool
+        def update_gaia_md(
+            project_root: str = ".",
+            project_name: str = None,
+            description: str = None,
+            structure: Dict[str, Any] = None,
+            instructions: str = None,
+        ) -> Dict[str, Any]:
+            """Create or update GAIA.md file for project context.
+
+            Args:
+                project_root: Root directory of the project
+                project_name: Name of the project
+                description: Project description
+                structure: Project structure dictionary
+                instructions: Special instructions for GAIA
+
+            Returns:
+                Dictionary with update results
+            """
+            try:
+                from datetime import datetime
+
+                gaia_path = os.path.join(project_root, "GAIA.md")
+
+                # Security check
+                if not self.path_validator.is_path_allowed(gaia_path):
+                    return {
+                        "status": "error",
+                        "error": f"Access denied: {gaia_path} is not in allowed paths",
+                    }
+
+                # Start building content
+                content = "# GAIA.md\n\n"
+                content += "This file provides guidance to GAIA Code Agent when working with code in this project.\n\n"
+
+                if project_name:
+                    content += f"## Project: {project_name}\n\n"
+
+                if description:
+                    content += f"## Description\n{description}\n\n"
+
+                content += f"**Last Updated:** {datetime.now().isoformat()}\n\n"
+
+                if structure:
+                    content += "## Project Structure\n```\n"
+
+                    def format_structure(struct, indent=""):
+                        result = ""
+                        if isinstance(struct, dict):
+                            for key, value in struct.items():
+                                if isinstance(value, dict):
+                                    result += f"{indent}{key}\n"
+                                    result += format_structure(value, indent + "  ")
+                                else:
+                                    result += f"{indent}{key} - {value}\n"
+                        return result
+
+                    content += format_structure(structure)
+                    content += "```\n\n"
+
+                if instructions:
+                    content += f"## Special Instructions\n{instructions}\n\n"
+
+                # Add default sections
+                content += "## Development Guidelines\n"
+                content += "- Follow PEP 8 style guidelines\n"
+                content += "- Add docstrings to all functions and classes\n"
+                content += "- Include type hints where appropriate\n"
+                content += "- Write unit tests for new functionality\n\n"
+
+                content += "## Code Quality\n"
+                content += "- All code should pass pylint checks\n"
+                content += "- Use Black formatter for consistent style\n"
+                content += "- Ensure proper error handling\n\n"
+
+                # Write the file
+                with open(gaia_path, "w", encoding="utf-8") as f:
+                    f.write(content)
+
+                return {
+                    "status": "success",
+                    "file_path": gaia_path,
+                    "created": not os.path.exists(gaia_path),
+                    "message": f"GAIA.md {'created' if not os.path.exists(gaia_path) else 'updated'} at {gaia_path}",
+                }
+            except Exception as e:
+                return {"status": "error", "error": str(e)}
+
+        @tool
+        def replace_function(
+            file_path: str,
+            function_name: str,
+            new_implementation: str,
+            backup: bool = True,
+        ) -> Dict[str, Any]:
+            """Replace a specific function in a Python file.
+
+            Args:
+                file_path: Path to the Python file
+                function_name: Name of the function to replace
+                new_implementation: New function implementation
+                backup: Whether to create backup
+
+            Returns:
+                Dictionary with replacement result
+            """
+            try:
+                # Security check
+                if not self.path_validator.is_path_allowed(file_path):
+                    return {
+                        "status": "error",
+                        "error": f"Access denied: {file_path} is not in allowed paths",
+                    }
+
+                if not os.path.exists(file_path):
+                    return {"status": "error", "error": f"File not found: {file_path}"}
+
+                with open(file_path, "r", encoding="utf-8") as f:
+                    content = f.read()
+
+                # Parse the file to find the function
+                try:
+                    tree = ast.parse(content)
+                except SyntaxError as e:
+                    return {"status": "error", "error": f"File has syntax errors: {e}"}
+
+                # Find the function node
+                function_node = None
+                for node in ast.walk(tree):
+                    if isinstance(node, (ast.FunctionDef, ast.AsyncFunctionDef)):
+                        if node.name == function_name:
+                            function_node = node
+                            break
+
+                if not function_node:
+                    return {
+                        "status": "error",
+                        "error": f"Function '{function_name}' not found in file",
+                    }
+
+                # Get line range of the function
+                lines = content.splitlines(keepends=True)
+                start_line = function_node.lineno - 1
+
+                # Find end of function (simplified - finds next def or class at same indent)
+                end_line = len(lines)
+                indent_level = len(lines[start_line]) - len(lines[start_line].lstrip())
+
+                for i in range(start_line + 1, len(lines)):
+                    line = lines[i]
+                    if line.strip() and not line.lstrip().startswith("#"):
+                        current_indent = len(line) - len(line.lstrip())
+                        if current_indent <= indent_level and line.strip():
+                            if line.lstrip().startswith(
+                                ("def ", "class ", "async def ")
+                            ):
+                                end_line = i
+                                break
+
+                # Create backup if requested
+                if backup:
+                    backup_path = f"{file_path}.bak"
+                    with open(backup_path, "w", encoding="utf-8") as f:
+                        f.write(content)
+
+                # Replace the function
+                new_lines = (
+                    lines[:start_line] + [new_implementation + "\n"] + lines[end_line:]
+                )
+                modified_content = "".join(new_lines)
+
+                # Validate new content (using mixin method)
+                validation = self._validate_python_syntax(modified_content)
+                if not validation["is_valid"]:
+                    return {
+                        "status": "error",
+                        "error": "Replacement would result in invalid syntax",
+                        "syntax_errors": validation.get("errors", []),
+                    }
+
+                # Write the modified content
+                with open(file_path, "w", encoding="utf-8") as f:
+                    f.write(modified_content)
+
+                # Generate diff
+                diff = "\n".join(
+                    difflib.unified_diff(
+                        content.splitlines(keepends=True),
+                        modified_content.splitlines(keepends=True),
+                        fromfile=file_path,
+                        tofile=file_path,
+                    )
+                )
+
+                return {
+                    "status": "success",
+                    "file_path": file_path,
+                    "function_replaced": function_name,
+                    "backup_path": backup_path if backup else None,
+                    "diff": diff,
+                }
+            except Exception as e:
+                return {"status": "error", "error": str(e)}
+
+        # Return the list of registered tools for tracking
+        return [
+            "read_file",
+            "write_python_file",
+            "edit_python_file",
+            "search_code",
+            "generate_diff",
+            "write_markdown_file",
+            "update_gaia_md",
+            "replace_function",
+        ]