alita-sdk 0.3.379__py3-none-any.whl → 0.3.462__py3-none-any.whl

alita_sdk/cli/agents.py

@@ -0,0 +1,1069 @@
+"""
+Agent commands for Alita CLI.
+
+Provides commands to work with agents interactively or in handoff mode,
+supporting both platform agents and local agent definition files.
+"""
+
+import asyncio
+import click
+import json
+import logging
+import sqlite3
+import sys
+from typing import Optional, Dict, Any, List
+from pathlib import Path
+import yaml
+
+from rich.console import Console
+from rich.panel import Panel
+from rich.table import Table
+from rich.markdown import Markdown
+from rich import box
+from rich.text import Text
+from rich.status import Status
+from rich.live import Live
+
+from .cli import get_client
+# Import from refactored modules
+from .agent_ui import print_welcome, print_help, display_output, extract_output_from_result
+from .agent_loader import load_agent_definition
+from .agent_executor import create_llm_instance, create_agent_executor, create_agent_executor_with_mcp
+from .toolkit_loader import load_toolkit_config, load_toolkit_configs
+from .callbacks import create_cli_callback, CLICallbackHandler
+
+logger = logging.getLogger(__name__)
+
+# Create a rich console for beautiful output
+console = Console()
+
+
+def _load_mcp_tools(agent_def: Dict[str, Any], mcp_config_path: str) -> List[Dict[str, Any]]:
+    """Load MCP tools from agent definition with tool-level filtering.
+    
+    Args:
+        agent_def: Agent definition dictionary containing mcps list
+        mcp_config_path: Path to mcp.json configuration file (workspace-level)
+        
+    Returns:
+        List of toolkit configurations for MCP servers
+    """
+    from .mcp_loader import load_mcp_tools
+    return load_mcp_tools(agent_def, mcp_config_path)
+
+
+def _setup_local_agent_executor(client, agent_def: Dict[str, Any], toolkit_config: tuple,
+                                config, model: Optional[str], temperature: Optional[float],
+                                max_tokens: Optional[int], memory, work_dir: Optional[str]):
+    """Setup local agent executor with all configurations.
+    
+    Returns:
+        Tuple of (agent_executor, mcp_session_manager, llm, llm_model, filesystem_tools)
+    """
+    # Load toolkit configs
+    toolkit_configs = load_toolkit_configs(agent_def, toolkit_config)
+    
+    # Load MCP tools
+    mcp_toolkit_configs = _load_mcp_tools(agent_def, config.mcp_config_path)
+    toolkit_configs.extend(mcp_toolkit_configs)
+    
+    # Create LLM instance
+    llm, llm_model, llm_temperature, llm_max_tokens = create_llm_instance(
+        client, model, agent_def, temperature, max_tokens
+    )
+    
+    # Add filesystem tools if --dir is provided
+    filesystem_tools = None
+    if work_dir:
+        from .tools import get_filesystem_tools
+        preset = agent_def.get('filesystem_tools_preset')
+        include_tools = agent_def.get('filesystem_tools_include')
+        exclude_tools = agent_def.get('filesystem_tools_exclude')
+        filesystem_tools = get_filesystem_tools(work_dir, include_tools, exclude_tools, preset)
+        
+        tool_count = len(filesystem_tools)
+        access_msg = f"✓ Granted filesystem access to: {work_dir} ({tool_count} tools)"
+        if preset:
+            access_msg += f" [preset: {preset}]"
+        if include_tools:
+            access_msg += f" [include: {', '.join(include_tools)}]"
+        if exclude_tools:
+            access_msg += f" [exclude: {', '.join(exclude_tools)}]"
+        console.print(f"[dim]{access_msg}[/dim]")
+    
+    # Check if we have tools
+    has_tools = bool(agent_def.get('tools') or toolkit_configs or filesystem_tools)
+    has_mcp = any(tc.get('toolkit_type') == 'mcp' for tc in toolkit_configs)
+    
+    if not has_tools:
+        return None, None, llm, llm_model, filesystem_tools
+    
+    # Create agent executor with or without MCP
+    mcp_session_manager = None
+    if has_mcp:
+        # Create persistent event loop for MCP tools
+        from alita_sdk.runtime.tools.llm import LLMNode
+        if not hasattr(LLMNode, '_persistent_loop') or \
+           LLMNode._persistent_loop is None or \
+           LLMNode._persistent_loop.is_closed():
+            LLMNode._persistent_loop = asyncio.new_event_loop()
+            console.print("[dim]Created persistent event loop for MCP tools[/dim]")
+        
+        # Load MCP tools using persistent loop
+        loop = LLMNode._persistent_loop
+        asyncio.set_event_loop(loop)
+        agent_executor, mcp_session_manager = loop.run_until_complete(
+            create_agent_executor_with_mcp(
+                client, agent_def, toolkit_configs,
+                llm, llm_model, llm_temperature, llm_max_tokens, memory,
+                filesystem_tools=filesystem_tools
+            )
+        )
+    else:
+        agent_executor = create_agent_executor(
+            client, agent_def, toolkit_configs,
+            llm, llm_model, llm_temperature, llm_max_tokens, memory,
+            filesystem_tools=filesystem_tools
+        )
+    
+    return agent_executor, mcp_session_manager, llm, llm_model, filesystem_tools
+
+
+def _select_agent_interactive(client, config) -> Optional[str]:
+    """
+    Show interactive menu to select an agent from platform and local agents.
+    
+    Returns:
+        Agent source (name/id for platform, file path for local) or None if cancelled
+    """
+    from .config import CLIConfig
+    
+    console.print("\n🤖 [bold cyan]Select an agent to chat with:[/bold cyan]\n")
+    
+    agents_list = []
+    
+    # Load platform agents
+    try:
+        platform_agents = client.get_list_of_apps()
+        for agent in platform_agents:
+            agents_list.append({
+                'type': 'platform',
+                'name': agent['name'],
+                'source': agent['name'],
+                'description': agent.get('description', '')[:60]
+            })
+    except Exception as e:
+        logger.debug(f"Failed to load platform agents: {e}")
+    
+    # Load local agents
+    agents_dir = config.agents_dir
+    search_dir = Path(agents_dir)
+    
+    if search_dir.exists():
+        for pattern in ['*.agent.md', '*.agent.yaml', '*.agent.yml', '*.agent.json']:
+            for file_path in search_dir.rglob(pattern):
+                try:
+                    agent_def = load_agent_definition(str(file_path))
+                    agents_list.append({
+                        'type': 'local',
+                        'name': agent_def.get('name', file_path.stem),
+                        'source': str(file_path),
+                        'description': agent_def.get('description', '')[:60]
+                    })
+                except Exception as e:
+                    logger.debug(f"Failed to load {file_path}: {e}")
+    
+    if not agents_list:
+        console.print("[yellow]No agents found. Create an agent first or check your configuration.[/yellow]")
+        return None
+    
+    # Display agents with numbers using rich
+    for i, agent in enumerate(agents_list, 1):
+        agent_type = "📦 Platform" if agent['type'] == 'platform' else "📁 Local"
+        console.print(f"{i}. [[bold]{agent_type}[/bold]] [cyan]{agent['name']}[/cyan]")
+        if agent['description']:
+            console.print(f"   [dim]{agent['description']}[/dim]")
+    
+    console.print(f"\n[dim]0. Cancel[/dim]")
+    
+    # Get user selection
+    while True:
+        try:
+            choice = input("\nSelect agent number: ").strip()
+            
+            if choice == '0':
+                return None
+            
+            idx = int(choice) - 1
+            if 0 <= idx < len(agents_list):
+                selected = agents_list[idx]
+                console.print(f"\n✓ [green]Selected:[/green] [bold]{selected['name']}[/bold]")
+                return selected['source']
+            else:
+                console.print(f"[yellow]Invalid selection. Please enter a number between 0 and {len(agents_list)}[/yellow]")
+        except ValueError:
+            console.print("[yellow]Please enter a valid number[/yellow]")
+        except (KeyboardInterrupt, EOFError):
+            console.print("\n\n[dim]Cancelled.[/dim]")
+            return None
+
+
+@click.group()
+def agent():
+    """Agent testing and interaction commands."""
+    pass
+
+
+@agent.command('list')
+@click.option('--local', is_flag=True, help='List local agent definition files')
+@click.option('--directory', default=None, help='Directory to search for local agents (defaults to AGENTS_DIR from .env)')
+@click.pass_context
+def agent_list(ctx, local: bool, directory: Optional[str]):
+    """
+    List available agents.
+    
+    By default, lists agents from the platform.
+    Use --local to list agent definition files in the local directory.
+    """
+    formatter = ctx.obj['formatter']
+    config = ctx.obj['config']
+    
+    try:
+        if local:
+            # List local agent definition files
+            if directory is None:
+                directory = config.agents_dir
+            search_dir = Path(directory)
+            
+            if not search_dir.exists():
+                console.print(f"[red]Directory not found: {directory}[/red]")
+                return
+            
+            agents = []
+            
+            # Find agent definition files
+            for pattern in ['*.agent.md', '*.agent.yaml', '*.agent.yml', '*.agent.json']:
+                for file_path in search_dir.rglob(pattern):
+                    try:
+                        agent_def = load_agent_definition(str(file_path))
+                        # Use relative path if already relative, otherwise make it relative to cwd
+                        try:
+                            display_path = str(file_path.relative_to(Path.cwd()))
+                        except ValueError:
+                            display_path = str(file_path)
+                        
+                        agents.append({
+                            'name': agent_def.get('name', file_path.stem),
+                            'file': display_path,
+                            'description': agent_def.get('description', '')[:80]
+                        })
+                    except Exception as e:
+                        logger.debug(f"Failed to load {file_path}: {e}")
+            
+            if not agents:
+                console.print(f"\n[yellow]No agent definition files found in {directory}[/yellow]")
+                return
+            
+            # Display local agents in a table
+            table = Table(
+                title=f"Local Agent Definitions in {directory}",
+                show_header=True,
+                header_style="bold cyan",
+                border_style="cyan",
+                box=box.ROUNDED
+            )
+            table.add_column("Name", style="bold cyan", no_wrap=True)
+            table.add_column("File", style="dim")
+            table.add_column("Description", style="white")
+            
+            for agent_info in sorted(agents, key=lambda x: x['name']):
+                table.add_row(
+                    agent_info['name'],
+                    agent_info['file'],
+                    agent_info['description'] or "-"
+                )
+            
+            console.print("\n")
+            console.print(table)
+            console.print(f"\n[green]Total: {len(agents)} local agents[/green]")
+            
+        else:
+            # List platform agents
+            client = get_client(ctx)
+            
+            agents = client.get_list_of_apps()
+            
+            if formatter.__class__.__name__ == 'JSONFormatter':
+                click.echo(formatter._dump({'agents': agents, 'total': len(agents)}))
+            else:
+                table = Table(
+                    title="Available Platform Agents",
+                    show_header=True,
+                    header_style="bold cyan",
+                    border_style="cyan",
+                    box=box.ROUNDED
+                )
+                table.add_column("ID", style="yellow", no_wrap=True)
+                table.add_column("Name", style="bold cyan")
+                table.add_column("Description", style="white")
+                
+                for agent_info in agents:
+                    table.add_row(
+                        str(agent_info['id']),
+                        agent_info['name'],
+                        agent_info.get('description', '')[:80] or "-"
+                    )
+                
+                console.print("\n")
+                console.print(table)
+                console.print(f"\n[green]Total: {len(agents)} agents[/green]")
+        
+    except Exception as e:
+        logger.exception("Failed to list agents")
+        error_panel = Panel(
+            str(e),
+            title="Error",
+            border_style="red",
+            box=box.ROUNDED
+        )
+        console.print(error_panel, style="red")
+        raise click.Abort()
+
+
+@agent.command('show')
+@click.argument('agent_source')
+@click.option('--version', help='Agent version (for platform agents)')
+@click.pass_context
+def agent_show(ctx, agent_source: str, version: Optional[str]):
+    """
+    Show agent details.
+    
+    AGENT_SOURCE can be:
+    - Platform agent ID or name (e.g., "123" or "my-agent")
+    - Path to local agent file (e.g., ".github/agents/sdk-dev.agent.md")
+    """
+    formatter = ctx.obj['formatter']
+    
+    try:
+        # Check if it's a file path
+        if Path(agent_source).exists():
+            # Local agent file
+            agent_def = load_agent_definition(agent_source)
+            
+            if formatter.__class__.__name__ == 'JSONFormatter':
+                click.echo(formatter._dump(agent_def))
+            else:
+                # Create details panel
+                details = Text()
+                details.append("File: ", style="bold")
+                details.append(f"{agent_source}\n", style="cyan")
+                
+                if agent_def.get('description'):
+                    details.append("\nDescription: ", style="bold")
+                    details.append(f"{agent_def['description']}\n", style="white")
+                
+                if agent_def.get('model'):
+                    details.append("Model: ", style="bold")
+                    details.append(f"{agent_def['model']}\n", style="cyan")
+                
+                if agent_def.get('tools'):
+                    details.append("Tools: ", style="bold")
+                    details.append(f"{', '.join(agent_def['tools'])}\n", style="cyan")
+                
+                if agent_def.get('temperature') is not None:
+                    details.append("Temperature: ", style="bold")
+                    details.append(f"{agent_def['temperature']}\n", style="cyan")
+                
+                panel = Panel(
+                    details,
+                    title=f"Local Agent: {agent_def.get('name', 'Unknown')}",
+                    title_align="left",
+                    border_style="cyan",
+                    box=box.ROUNDED
+                )
+                console.print("\n")
+                console.print(panel)
+                
+                if agent_def.get('system_prompt'):
+                    console.print("\n[bold]System Prompt:[/bold]")
+                    console.print(Panel(agent_def['system_prompt'][:500] + "...", border_style="dim", box=box.ROUNDED))
+        
+        else:
+            # Platform agent
+            client = get_client(ctx)
+            
+            # Try to find agent by ID or name
+            agents = client.get_list_of_apps()
+            
+            agent = None
+            try:
+                agent_id = int(agent_source)
+                agent = next((a for a in agents if a['id'] == agent_id), None)
+            except ValueError:
+                agent = next((a for a in agents if a['name'] == agent_source), None)
+            
+            if not agent:
+                raise click.ClickException(f"Agent '{agent_source}' not found")
+            
+            # Get details
+            details = client.get_app_details(agent['id'])
+            
+            if formatter.__class__.__name__ == 'JSONFormatter':
+                click.echo(formatter._dump(details))
+            else:
+                # Create platform agent details panel
+                content = Text()
+                content.append("ID: ", style="bold")
+                content.append(f"{details['id']}\n", style="yellow")
+                
+                if details.get('description'):
+                    content.append("\nDescription: ", style="bold")
+                    content.append(f"{details['description']}\n", style="white")
+                
+                panel = Panel(
+                    content,
+                    title=f"Agent: {details['name']}",
+                    title_align="left",
+                    border_style="cyan",
+                    box=box.ROUNDED
+                )
+                console.print("\n")
+                console.print(panel)
+                
+                # Display versions in a table
+                if details.get('versions'):
+                    console.print("\n[bold]Versions:[/bold]")
+                    versions_table = Table(box=box.ROUNDED, border_style="dim")
+                    versions_table.add_column("Name", style="cyan")
+                    versions_table.add_column("ID", style="yellow")
+                    for ver in details.get('versions', []):
+                        versions_table.add_row(ver['name'], str(ver['id']))
+                    console.print(versions_table)
+    
+    except click.ClickException:
+        raise
+    except Exception as e:
+        logger.exception("Failed to show agent details")
+        error_panel = Panel(
+            str(e),
+            title="Error",
+            border_style="red",
+            box=box.ROUNDED
+        )
+        console.print(error_panel, style="red")
+        raise click.Abort()
+
+
+@agent.command('chat')
+@click.argument('agent_source', required=False)
+@click.option('--version', help='Agent version (for platform agents)')
+@click.option('--toolkit-config', multiple=True, type=click.Path(exists=True),
+              help='Toolkit configuration files (can specify multiple)')
+@click.option('--thread-id', help='Continue existing conversation thread')
+@click.option('--model', help='Override LLM model')
+@click.option('--temperature', type=float, help='Override temperature')
+@click.option('--max-tokens', type=int, help='Override max tokens')
+@click.option('--dir', 'work_dir', type=click.Path(exists=True, file_okay=False, dir_okay=True),
+              help='Grant agent filesystem access to this directory')
+@click.option('--verbose', '-v', type=click.Choice(['quiet', 'default', 'debug']), default='default',
+              help='Output verbosity level: quiet (final output only), default (tool calls + outputs), debug (all including LLM calls)')
+@click.pass_context
+def agent_chat(ctx, agent_source: Optional[str], version: Optional[str], 
+               toolkit_config: tuple, thread_id: Optional[str],
+               model: Optional[str], temperature: Optional[float], 
+               max_tokens: Optional[int], work_dir: Optional[str],
+               verbose: str):
+    """
+    Start interactive chat with an agent.
+    
+    If AGENT_SOURCE is not provided, shows an interactive menu to select from
+    available agents (both platform and local).
+    
+    AGENT_SOURCE can be:
+    - Platform agent ID or name
+    - Path to local agent file
+    
+    Examples:
+    
+        # Interactive selection
+        alita-cli agent chat
+        
+        # Chat with platform agent
+        alita-cli agent chat my-agent
+        
+        # Chat with local agent
+        alita-cli agent chat .github/agents/sdk-dev.agent.md
+        
+        # With toolkit configurations
+        alita-cli agent chat my-agent \\
+            --toolkit-config jira-config.json \\
+            --toolkit-config github-config.json
+        
+        # With filesystem access
+        alita-cli agent chat my-agent --dir ./workspace
+        
+        # Continue previous conversation
+        alita-cli agent chat my-agent --thread-id abc123
+        
+        # Quiet mode (hide tool calls and thinking)
+        alita-cli agent chat my-agent --verbose quiet
+        
+        # Debug mode (show all including LLM calls)
+        alita-cli agent chat my-agent --verbose debug
+    """
+    formatter = ctx.obj['formatter']
+    config = ctx.obj['config']
+    client = get_client(ctx)
+    
+    # Setup verbose level
+    show_verbose = verbose != 'quiet'
+    debug_mode = verbose == 'debug'
+    
+    try:
+        # If no agent specified, show selection menu
+        if not agent_source:
+            agent_source = _select_agent_interactive(client, config)
+            if not agent_source:
+                console.print("[yellow]No agent selected. Exiting.[/yellow]")
+                return
+        
+        # Load agent
+        is_local = Path(agent_source).exists()
+        
+        if is_local:
+            agent_def = load_agent_definition(agent_source)
+            agent_name = agent_def.get('name', Path(agent_source).stem)
+            agent_type = "Local Agent"
+        else:
+            # Platform agent - find it
+            agents = client.get_list_of_apps()
+            agent = None
+            
+            try:
+                agent_id = int(agent_source)
+                agent = next((a for a in agents if a['id'] == agent_id), None)
+            except ValueError:
+                agent = next((a for a in agents if a['name'] == agent_source), None)
+            
+            if not agent:
+                raise click.ClickException(f"Agent '{agent_source}' not found")
+            
+            agent_name = agent['name']
+            agent_type = "Platform Agent"
+        
+        # Print nice welcome banner
+        print_welcome(agent_name, agent_type)
+        
+        # Initialize conversation
+        chat_history = []
+        
+        # Create memory for agent
+        from langgraph.checkpoint.sqlite import SqliteSaver
+        memory = SqliteSaver(sqlite3.connect(":memory:", check_same_thread=False))
+        
+        # Create agent executor
+        if is_local:
+            # Display configuration
+            llm_model_display = model or agent_def.get('model', 'gpt-4o')
+            llm_temperature_display = temperature if temperature is not None else agent_def.get('temperature', 0.7)
+            console.print()
+            console.print(f"✓ [green]Using model:[/green] [bold]{llm_model_display}[/bold]")
+            console.print(f"✓ [green]Temperature:[/green] [bold]{llm_temperature_display}[/bold]")
+            if agent_def.get('tools'):
+                console.print(f"✓ [green]Tools:[/green] [bold]{', '.join(agent_def['tools'])}[/bold]")
+            console.print()
+            
+            # Setup local agent executor (handles all config, tools, MCP, etc.)
+            try:
+                agent_executor, mcp_session_manager, llm, llm_model, filesystem_tools = _setup_local_agent_executor(
+                    client, agent_def, toolkit_config, config, model, temperature, max_tokens, memory, work_dir
+                )
+            except Exception:
+                return
+        else:
+            # Platform agent
+            details = client.get_app_details(agent['id'])
+            
+            if version:
+                version_obj = next((v for v in details['versions'] if v['name'] == version), None)
+                if not version_obj:
+                    raise click.ClickException(f"Version '{version}' not found")
+                version_id = version_obj['id']
+            else:
+                # Use first version
+                version_id = details['versions'][0]['id']
+            
+            # Display configuration
+            console.print()
+            console.print("✓ [green]Connected to platform agent[/green]")
+            console.print()
+            
+            agent_executor = client.application(
+                application_id=agent['id'],
+                application_version_id=version_id,
+                memory=memory,
+                chat_history=chat_history
+            )
+            llm = None  # Platform agents don't use direct LLM
+        
+        # Interactive chat loop
+        while True:
+            try:
+                # Styled prompt
+                console.print("\n[bold bright_white]>[/bold bright_white] ", end="")
+                user_input = input().strip()
+                
+                if not user_input:
+                    continue
+                
+                # Handle commands
+                if user_input.lower() in ['exit', 'quit']:
+                    console.print("\n[bold cyan]👋 Goodbye![/bold cyan]\n")
+                    break
+                
+                if user_input == '/clear':
+                    chat_history = []
+                    console.print("[green]✓ Conversation history cleared.[/green]")
+                    continue
+                
+                if user_input == '/history':
+                    if not chat_history:
+                        console.print("[yellow]No conversation history yet.[/yellow]")
+                    else:
+                        console.print("\n[bold cyan]── Conversation History ──[/bold cyan]")
+                        for i, msg in enumerate(chat_history, 1):
+                            role = msg.get('role', 'unknown')
+                            content = msg.get('content', '')
+                            role_color = 'blue' if role == 'user' else 'green'
+                            console.print(f"\n[bold {role_color}]{i}. {role.upper()}:[/bold {role_color}] {content[:100]}...")
+                    continue
+                
+                if user_input == '/save':
+                    console.print("[yellow]Save to file (default: conversation.json):[/yellow] ", end="")
+                    filename = input().strip()
+                    filename = filename or "conversation.json"
+                    with open(filename, 'w') as f:
+                        json.dump({'history': chat_history}, f, indent=2)
+                    console.print(f"[green]✓ Conversation saved to {filename}[/green]")
+                    continue
+                
+                if user_input == '/help':
+                    print_help()
+                    continue
+                
+                # Execute agent
+                if is_local and agent_executor is None:
+                    # Local agent without tools: use direct LLM call with streaming
+                    system_prompt = agent_def.get('system_prompt', '')
+                    messages = []
+                    if system_prompt:
+                        messages.append({"role": "system", "content": system_prompt})
+                    
+                    # Add chat history
+                    for msg in chat_history:
+                        messages.append(msg)
+                    
+                    # Add user message
+                    messages.append({"role": "user", "content": user_input})
+                    
+                    try:
+                        # Try streaming if available
+                        if hasattr(llm, 'stream'):
+                            output_chunks = []
+                            first_chunk = True
+                            
+                            # Show spinner until first token arrives
+                            status = console.status("[yellow]Thinking...[/yellow]", spinner="dots")
+                            status.start()
+                            
+                            # Stream the response token by token
+                            for chunk in llm.stream(messages):
+                                if hasattr(chunk, 'content'):
+                                    token = chunk.content
+                                else:
+                                    token = str(chunk)
+                                
+                                if token:
+                                    # Stop spinner and show agent name on first token
+                                    if first_chunk:
+                                        status.stop()
+                                        console.print(f"\n[bold bright_cyan]{agent_name}:[/bold bright_cyan]\n", end="")
+                                        first_chunk = False
+                                    
+                                    console.print(token, end="", markup=False)
+                                    output_chunks.append(token)
+                            
+                            # Stop status if still running (no tokens received)
+                            if first_chunk:
+                                status.stop()
+                                console.print(f"\n[bold bright_cyan]{agent_name}:[/bold bright_cyan]\n", end="")
+                            
+                            output = ''.join(output_chunks)
+                            console.print()  # New line after streaming
+                        else:
+                            # Fallback to non-streaming with spinner
+                            with console.status("[yellow]Thinking...[/yellow]", spinner="dots"):
+                                response = llm.invoke(messages)
+                                if hasattr(response, 'content'):
+                                    output = response.content
+                                else:
+                                    output = str(response)
+                            
+                            # Display response after spinner stops
+                            console.print(f"\n[bold bright_cyan]{agent_name}:[/bold bright_cyan]")
+                            if any(marker in output for marker in ['```', '**', '##', '- ', '* ']):
+                                console.print(Markdown(output))
+                            else:
+                                console.print(output)
+                    except Exception as e:
+                        console.print(f"\n[red]✗ Error: {e}[/red]\n")
+                        continue
+                else:
+                    # Agent with tools or platform agent: use agent executor
+                    # Setup callback for verbose output
+                    from langchain_core.runnables import RunnableConfig
+                    
+                    invoke_config = None
+                    if show_verbose:
+                        cli_callback = create_cli_callback(verbose=True, debug=debug_mode)
+                        invoke_config = RunnableConfig(callbacks=[cli_callback])
+                    
+                    # Show status only when not verbose (verbose shows its own progress)
+                    if not show_verbose:
+                        with console.status("[yellow]Thinking...[/yellow]", spinner="dots"):
+                            result = agent_executor.invoke(
+                                {
+                                    "input": [user_input] if not is_local else user_input,
+                                    "chat_history": chat_history
+                                },
+                                config=invoke_config
+                            )
+                    else:
+                        console.print()  # Add spacing before tool calls
+                        result = agent_executor.invoke(
+                            {
+                                "input": [user_input] if not is_local else user_input,
+                                "chat_history": chat_history
+                            },
+                            config=invoke_config
+                        )
+                        
+                    # Extract output from result
+                    output = extract_output_from_result(result)
+                    
+                    # Display response
+                    console.print(f"\n[bold bright_cyan]{agent_name}:[/bold bright_cyan]")
+                    if any(marker in output for marker in ['```', '**', '##', '- ', '* ']):
+                        console.print(Markdown(output))
+                    else:
+                        console.print(output)
+                
+                # Update chat history
+                chat_history.append({"role": "user", "content": user_input})
+                chat_history.append({"role": "assistant", "content": output})
+                
+            except KeyboardInterrupt:
+                console.print("\n\n[yellow]Interrupted. Type 'exit' to quit or continue chatting.[/yellow]")
+                continue
+            except EOFError:
+                console.print("\n\n[bold cyan]Goodbye! 👋[/bold cyan]")
+                break
+    
+    except click.ClickException:
+        raise
+    except Exception as e:
+        logger.exception("Failed to start chat")
+        error_panel = Panel(
+            str(e),
+            title="Error",
+            border_style="red",
+            box=box.ROUNDED
+        )
+        console.print(error_panel, style="red")
+        raise click.Abort()
+
+
+@agent.command('run')
+@click.argument('agent_source')
+@click.argument('message')
+@click.option('--version', help='Agent version (for platform agents)')
+@click.option('--toolkit-config', multiple=True, type=click.Path(exists=True),
+              help='Toolkit configuration files')
+@click.option('--model', help='Override LLM model')
+@click.option('--temperature', type=float, help='Override temperature')
+@click.option('--max-tokens', type=int, help='Override max tokens')
+@click.option('--save-thread', help='Save thread ID to file for continuation')
+@click.option('--dir', 'work_dir', type=click.Path(exists=True, file_okay=False, dir_okay=True),
+              help='Grant agent filesystem access to this directory')
+@click.option('--verbose', '-v', type=click.Choice(['quiet', 'default', 'debug']), default='default',
+              help='Output verbosity level: quiet (final output only), default (tool calls + outputs), debug (all including LLM calls)')
+@click.pass_context
+def agent_run(ctx, agent_source: str, message: str, version: Optional[str],
+              toolkit_config: tuple, model: Optional[str], 
+              temperature: Optional[float], max_tokens: Optional[int],
+              save_thread: Optional[str], work_dir: Optional[str],
+              verbose: str):
+    """
+    Run agent with a single message (handoff mode).
+    
+    AGENT_SOURCE can be:
+    - Platform agent ID or name
+    - Path to local agent file
+    
+    MESSAGE is the input message to send to the agent.
+    
+    Examples:
+    
+        # Simple query
+        alita-cli agent run my-agent "What is the status of JIRA-123?"
+        
+        # With local agent
+        alita-cli agent run .github/agents/sdk-dev.agent.md \\
+            "Create a new toolkit for Stripe API"
+        
+        # With toolkit configs and JSON output
+        alita-cli --output json agent run my-agent "Search for bugs" \\
+            --toolkit-config jira-config.json
+        
+        # With filesystem access
+        alita-cli agent run my-agent "Analyze the code in src/" --dir ./myproject
+        
+        # Save thread for continuation
+        alita-cli agent run my-agent "Start task" \\
+            --save-thread thread.txt
+            
+        # Quiet mode (hide tool calls and thinking)
+        alita-cli agent run my-agent "Query" --verbose quiet
+        
+        # Debug mode (show all including LLM calls)
+        alita-cli agent run my-agent "Query" --verbose debug
+    """
+    formatter = ctx.obj['formatter']
+    client = get_client(ctx)
+    
+    # Setup verbose level
+    show_verbose = verbose != 'quiet'
+    debug_mode = verbose == 'debug'
+    
+    try:
+        # Load agent
+        is_local = Path(agent_source).exists()
+        
+        if is_local:
+            agent_def = load_agent_definition(agent_source)
+            agent_name = agent_def.get('name', Path(agent_source).stem)
+            
+            # Create memory for agent
+            from langgraph.checkpoint.sqlite import SqliteSaver
+            memory = SqliteSaver(sqlite3.connect(":memory:", check_same_thread=False))
+            
+            # Setup local agent executor (reuses same logic as agent_chat)
+            try:
+                agent_executor, mcp_session_manager, llm, llm_model, filesystem_tools = _setup_local_agent_executor(
+                    client, agent_def, toolkit_config, ctx.obj['config'], model, temperature, max_tokens, memory, work_dir
+                )
+            except Exception as e:
+                error_panel = Panel(
+                    f"Failed to setup agent: {e}",
+                    title="Error",
+                    border_style="red",
+                    box=box.ROUNDED
+                )
+                console.print(error_panel, style="red")
+                raise click.Abort()
+            
+            # Execute agent
+            if agent_executor:
+                # Setup callback for verbose output
+                from langchain_core.runnables import RunnableConfig
+                
+                invoke_config = None
+                if show_verbose:
+                    cli_callback = create_cli_callback(verbose=True, debug=debug_mode)
+                    invoke_config = RunnableConfig(callbacks=[cli_callback])
+                
+                # Execute with spinner for non-JSON output
+                if formatter.__class__.__name__ == 'JSONFormatter':
+                    # JSON output: always quiet, no callbacks
+                    with console.status("[yellow]Processing...[/yellow]", spinner="dots"):
+                        result = agent_executor.invoke({
+                            "input": message,
+                            "chat_history": []
+                        })
+                    
+                    click.echo(formatter._dump({
+                        'agent': agent_name,
+                        'message': message,
+                        'response': extract_output_from_result(result),
+                        'full_result': result
+                    }))
+                else:
+                    # Show status only when not verbose (verbose shows its own progress)
+                    if not show_verbose:
+                        with console.status("[yellow]Processing...[/yellow]", spinner="dots"):
+                            result = agent_executor.invoke(
+                                {
+                                    "input": message,
+                                    "chat_history": []
+                                },
+                                config=invoke_config
+                            )
+                    else:
+                        console.print()  # Add spacing before tool calls
+                        result = agent_executor.invoke(
+                            {
+                                "input": message,
+                                "chat_history": []
+                            },
+                            config=invoke_config
+                        )
+                    
+                    # Extract and display output
+                    output = extract_output_from_result(result)
+                    display_output(agent_name, message, output)
+            else:
+                # Simple LLM mode without tools
+                system_prompt = agent_def.get('system_prompt', '')
+                messages = []
+                if system_prompt:
+                    messages.append({"role": "system", "content": system_prompt})
+                messages.append({"role": "user", "content": message})
+                
+                # Execute with spinner for non-JSON output
+                if formatter.__class__.__name__ == 'JSONFormatter':
+                    response = llm.invoke(messages)
+                    if hasattr(response, 'content'):
+                        output = response.content
+                    else:
+                        output = str(response)
+                    
+                    click.echo(formatter._dump({
+                        'agent': agent_name,
+                        'message': message,
+                        'response': output
+                    }))
+                else:
+                    # Show spinner while executing
+                    with console.status("[yellow]Processing...[/yellow]", spinner="dots"):
+                        response = llm.invoke(messages)
+                        if hasattr(response, 'content'):
+                            output = response.content
+                        else:
+                            output = str(response)
+                    
+                    # Display output
+                    display_output(agent_name, message, output)
+        
+        else:
+            # Platform agent
+            agents = client.get_list_of_apps()
+            agent = None
+            
+            try:
+                agent_id = int(agent_source)
+                agent = next((a for a in agents if a['id'] == agent_id), None)
+            except ValueError:
+                agent = next((a for a in agents if a['name'] == agent_source), None)
+            
+            if not agent:
+                raise click.ClickException(f"Agent '{agent_source}' not found")
+            
+            # Get version
+            details = client.get_app_details(agent['id'])
+            
+            if version:
+                version_obj = next((v for v in details['versions'] if v['name'] == version), None)
+                if not version_obj:
+                    raise click.ClickException(f"Version '{version}' not found")
+                version_id = version_obj['id']
+            else:
+                version_id = details['versions'][0]['id']
+            
+            # Load toolkit configs from CLI options
+            toolkit_configs = []
+            if toolkit_config:
+                for config_path in toolkit_config:
+                    toolkit_configs.append(load_toolkit_config(config_path))
+            
+            # Create memory
+            from langgraph.checkpoint.sqlite import SqliteSaver
+            memory = SqliteSaver(sqlite3.connect(":memory:", check_same_thread=False))
+            
+            # Create agent executor
+            agent_executor = client.application(
+                application_id=agent['id'],
+                application_version_id=version_id,
+                memory=memory
+            )
+            
+            # Setup callback for verbose output
+            from langchain_core.runnables import RunnableConfig
+            
+            invoke_config = None
+            if show_verbose:
+                cli_callback = create_cli_callback(verbose=True, debug=debug_mode)
+                invoke_config = RunnableConfig(callbacks=[cli_callback])
+            
+            # Execute with spinner for non-JSON output
+            if formatter.__class__.__name__ == 'JSONFormatter':
+                result = agent_executor.invoke({
+                    "input": [message],
+                    "chat_history": []
+                })
+                
+                click.echo(formatter._dump({
+                    'agent': agent['name'],
+                    'message': message,
+                    'response': result.get('output', ''),
+                    'full_result': result
+                }))
+            else:
+                # Show status only when not verbose
+                if not show_verbose:
+                    with console.status("[yellow]Processing...[/yellow]", spinner="dots"):
+                        result = agent_executor.invoke(
+                            {
+                                "input": [message],
+                                "chat_history": []
+                            },
+                            config=invoke_config
+                        )
+                else:
+                    console.print()  # Add spacing before tool calls
+                    result = agent_executor.invoke(
+                        {
+                            "input": [message],
+                            "chat_history": []
+                        },
+                        config=invoke_config
+                    )
+                
+                # Display output
+                response = result.get('output', 'No response')
+                display_output(agent['name'], message, response)
+            
+            # Save thread if requested
+            if save_thread:
+                thread_data = {
+                    'agent_id': agent['id'],
+                    'agent_name': agent['name'],
+                    'version_id': version_id,
+                    'thread_id': result.get('thread_id'),
+                    'last_message': message
+                }
+                with open(save_thread, 'w') as f:
+                    json.dump(thread_data, f, indent=2)
+                logger.info(f"Thread saved to {save_thread}")
+    
+    except click.ClickException:
+        raise
+    except Exception as e:
+        logger.exception("Failed to run agent")
+        error_panel = Panel(
+            str(e),
+            title="Error",
+            border_style="red",
+            box=box.ROUNDED
+        )
+        console.print(error_panel, style="red")
+        raise click.Abort()