alberta-framework 0.2.2__py3-none-any.whl

alberta_framework/utils/__init__.py

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+"""Utility functions for the Alberta Framework."""
+
+# Experiment runner (no external deps)
+from alberta_framework.utils.experiments import (
+    AggregatedResults,
+    ExperimentConfig,
+    MetricSummary,
+    SingleRunResult,
+    aggregate_metrics,
+    get_final_performance,
+    get_metric_timeseries,
+    run_multi_seed_experiment,
+    run_single_experiment,
+)
+
+# Export utilities (no external deps for basic functionality)
+from alberta_framework.utils.export import (
+    export_to_csv,
+    export_to_json,
+    generate_latex_table,
+    generate_markdown_table,
+    save_experiment_report,
+)
+from alberta_framework.utils.metrics import (
+    compare_learners,
+    compute_cumulative_error,
+    compute_running_mean,
+    compute_tracking_error,
+    extract_metric,
+)
+
+__all__ = [
+    # Metrics
+    "compare_learners",
+    "compute_cumulative_error",
+    "compute_running_mean",
+    "compute_tracking_error",
+    "extract_metric",
+    # Experiments
+    "AggregatedResults",
+    "ExperimentConfig",
+    "MetricSummary",
+    "SingleRunResult",
+    "aggregate_metrics",
+    "get_final_performance",
+    "get_metric_timeseries",
+    "run_multi_seed_experiment",
+    "run_single_experiment",
+    # Export
+    "export_to_csv",
+    "export_to_json",
+    "generate_latex_table",
+    "generate_markdown_table",
+    "save_experiment_report",
+]
+
+# Optional: Statistics (requires scipy for full functionality)
+try:
+    from alberta_framework.utils.statistics import (
+        SignificanceResult,
+        StatisticalSummary,
+        bonferroni_correction,
+        bootstrap_ci,
+        cohens_d,
+        compute_statistics,
+        compute_timeseries_statistics,
+        holm_correction,
+        mann_whitney_comparison,
+        pairwise_comparisons,
+        ttest_comparison,
+        wilcoxon_comparison,
+    )
+
+    __all__ += [
+        "SignificanceResult",
+        "StatisticalSummary",
+        "bonferroni_correction",
+        "bootstrap_ci",
+        "cohens_d",
+        "compute_statistics",
+        "compute_timeseries_statistics",
+        "holm_correction",
+        "mann_whitney_comparison",
+        "pairwise_comparisons",
+        "ttest_comparison",
+        "wilcoxon_comparison",
+    ]
+except ImportError:
+    pass
+
+# Optional: Visualization (requires matplotlib)
+try:
+    from alberta_framework.utils.visualization import (
+        create_comparison_figure,
+        plot_final_performance_bars,
+        plot_hyperparameter_heatmap,
+        plot_learning_curves,
+        plot_step_size_evolution,
+        save_figure,
+        set_publication_style,
+    )
+
+    __all__ += [
+        "create_comparison_figure",
+        "plot_final_performance_bars",
+        "plot_hyperparameter_heatmap",
+        "plot_learning_curves",
+        "plot_step_size_evolution",
+        "save_figure",
+        "set_publication_style",
+    ]
+except ImportError:
+    pass

alberta_framework/utils/experiments.py

@@ -0,0 +1,335 @@
+"""Multi-seed experiment runner for publication-quality analysis.
+
+Provides infrastructure for running experiments across multiple seeds
+with optional parallelization and aggregation of results.
+"""
+
+from collections.abc import Callable, Sequence
+from typing import Any, NamedTuple, cast
+
+import jax.random as jr
+import numpy as np
+from numpy.typing import NDArray
+
+from alberta_framework.core.learners import (
+    LinearLearner,
+    NormalizedLearnerState,
+    NormalizedLinearLearner,
+    metrics_to_dicts,
+    run_learning_loop,
+    run_normalized_learning_loop,
+)
+from alberta_framework.core.types import LearnerState
+from alberta_framework.streams.base import ScanStream
+
+
+class ExperimentConfig(NamedTuple):
+    """Configuration for a single experiment.
+
+    Attributes:
+        name: Human-readable name for this configuration
+        learner_factory: Callable that returns a fresh learner instance
+        stream_factory: Callable that returns a fresh stream instance
+        num_steps: Number of learning steps to run
+    """
+
+    name: str
+    learner_factory: Callable[[], LinearLearner | NormalizedLinearLearner]
+    stream_factory: Callable[[], ScanStream[Any]]
+    num_steps: int
+
+
+class SingleRunResult(NamedTuple):
+    """Result from a single experiment run.
+
+    Attributes:
+        config_name: Name of the configuration that was run
+        seed: Random seed used for this run
+        metrics_history: List of metric dictionaries from each step
+        final_state: Final learner state after training
+    """
+
+    config_name: str
+    seed: int
+    metrics_history: list[dict[str, float]]
+    final_state: LearnerState | NormalizedLearnerState
+
+
+class MetricSummary(NamedTuple):
+    """Summary statistics for a single metric.
+
+    Attributes:
+        mean: Mean across seeds
+        std: Standard deviation across seeds
+        min: Minimum value across seeds
+        max: Maximum value across seeds
+        n_seeds: Number of seeds
+        values: Raw values per seed
+    """
+
+    mean: float
+    std: float
+    min: float
+    max: float
+    n_seeds: int
+    values: NDArray[np.float64]
+
+
+class AggregatedResults(NamedTuple):
+    """Aggregated results across multiple seeds.
+
+    Attributes:
+        config_name: Name of the configuration
+        seeds: List of seeds used
+        metric_arrays: Dict mapping metric name to (n_seeds, n_steps) array
+        summary: Dict mapping metric name to MetricSummary (final values)
+    """
+
+    config_name: str
+    seeds: list[int]
+    metric_arrays: dict[str, NDArray[np.float64]]
+    summary: dict[str, MetricSummary]
+
+
+def run_single_experiment(
+    config: ExperimentConfig,
+    seed: int,
+) -> SingleRunResult:
+    """Run a single experiment with a given seed.
+
+    Args:
+        config: Experiment configuration
+        seed: Random seed for the stream
+
+    Returns:
+        SingleRunResult with metrics and final state
+    """
+    learner = config.learner_factory()
+    stream = config.stream_factory()
+    key = jr.key(seed)
+
+    final_state: LearnerState | NormalizedLearnerState
+    if isinstance(learner, NormalizedLinearLearner):
+        norm_result = run_normalized_learning_loop(
+            learner, stream, config.num_steps, key
+        )
+        final_state, metrics = cast(tuple[NormalizedLearnerState, Any], norm_result)
+        metrics_history = metrics_to_dicts(metrics, normalized=True)
+    else:
+        linear_result = run_learning_loop(learner, stream, config.num_steps, key)
+        final_state, metrics = cast(tuple[LearnerState, Any], linear_result)
+        metrics_history = metrics_to_dicts(metrics)
+
+    return SingleRunResult(
+        config_name=config.name,
+        seed=seed,
+        metrics_history=metrics_history,
+        final_state=final_state,
+    )
+
+
+def aggregate_metrics(results: list[SingleRunResult]) -> AggregatedResults:
+    """Aggregate results from multiple seeds into summary statistics.
+
+    Args:
+        results: List of SingleRunResult from multiple seeds
+
+    Returns:
+        AggregatedResults with aggregated metrics
+    """
+    if not results:
+        raise ValueError("Cannot aggregate empty results list")
+
+    config_name = results[0].config_name
+    seeds = [r.seed for r in results]
+
+    # Get all metric keys from first result
+    metric_keys = list(results[0].metrics_history[0].keys())
+
+    # Build metric arrays: (n_seeds, n_steps)
+    metric_arrays: dict[str, NDArray[np.float64]] = {}
+    for key in metric_keys:
+        arrays = []
+        for r in results:
+            values = np.array([m[key] for m in r.metrics_history])
+            arrays.append(values)
+        metric_arrays[key] = np.stack(arrays)
+
+    # Compute summary statistics for final values (mean of last 100 steps)
+    summary: dict[str, MetricSummary] = {}
+    n_seeds = len(results)
+    for key in metric_keys:
+        # Use mean of last 100 steps as the final value
+        window = min(100, metric_arrays[key].shape[1])
+        final_values = np.mean(metric_arrays[key][:, -window:], axis=1)
+        summary[key] = MetricSummary(
+            mean=float(np.mean(final_values)),
+            std=float(np.std(final_values)),
+            min=float(np.min(final_values)),
+            max=float(np.max(final_values)),
+            n_seeds=n_seeds,
+            values=final_values,
+        )
+
+    return AggregatedResults(
+        config_name=config_name,
+        seeds=seeds,
+        metric_arrays=metric_arrays,
+        summary=summary,
+    )
+
+
+def run_multi_seed_experiment(
+    configs: Sequence[ExperimentConfig],
+    seeds: int | Sequence[int] = 30,
+    parallel: bool = True,
+    n_jobs: int = -1,
+    show_progress: bool = True,
+) -> dict[str, AggregatedResults]:
+    """Run experiments across multiple seeds with optional parallelization.
+
+    Args:
+        configs: List of experiment configurations to run
+        seeds: Number of seeds (generates 0..n-1) or explicit list of seeds
+        parallel: Whether to use parallel execution (requires joblib)
+        n_jobs: Number of parallel jobs (-1 for all CPUs)
+        show_progress: Whether to show progress bar (requires tqdm)
+
+    Returns:
+        Dictionary mapping config name to AggregatedResults
+    """
+    # Convert seeds to list
+    if isinstance(seeds, int):
+        seed_list = list(range(seeds))
+    else:
+        seed_list = list(seeds)
+
+    # Build list of (config, seed) pairs
+    tasks: list[tuple[ExperimentConfig, int]] = []
+    for config in configs:
+        for seed in seed_list:
+            tasks.append((config, seed))
+
+    # Run experiments
+    if parallel:
+        try:
+            from joblib import Parallel, delayed
+
+            if show_progress:
+                try:
+                    from tqdm import tqdm
+
+                    results_list: list[SingleRunResult] = Parallel(n_jobs=n_jobs)(
+                        delayed(run_single_experiment)(config, seed)
+                        for config, seed in tqdm(tasks, desc="Running experiments")
+                    )
+                except ImportError:
+                    results_list = Parallel(n_jobs=n_jobs)(
+                        delayed(run_single_experiment)(config, seed) for config, seed in tasks
+                    )
+            else:
+                results_list = Parallel(n_jobs=n_jobs)(
+                    delayed(run_single_experiment)(config, seed) for config, seed in tasks
+                )
+        except ImportError:
+            # Fallback to sequential if joblib not available
+            results_list = _run_sequential(tasks, show_progress)
+    else:
+        results_list = _run_sequential(tasks, show_progress)
+
+    # Group results by config name
+    grouped: dict[str, list[SingleRunResult]] = {}
+    for result in results_list:
+        if result.config_name not in grouped:
+            grouped[result.config_name] = []
+        grouped[result.config_name].append(result)
+
+    # Aggregate each config
+    aggregated: dict[str, AggregatedResults] = {}
+    for config_name, group_results in grouped.items():
+        aggregated[config_name] = aggregate_metrics(group_results)
+
+    return aggregated
+
+
+def _run_sequential(
+    tasks: list[tuple[ExperimentConfig, int]],
+    show_progress: bool,
+) -> list[SingleRunResult]:
+    """Run experiments sequentially."""
+    if show_progress:
+        try:
+            from tqdm import tqdm
+
+            return [run_single_experiment(config, seed) for config, seed in tqdm(tasks)]
+        except ImportError:
+            pass
+    return [run_single_experiment(config, seed) for config, seed in tasks]
+
+
+def get_metric_timeseries(
+    results: AggregatedResults,
+    metric: str = "squared_error",
+) -> tuple[NDArray[np.float64], NDArray[np.float64], NDArray[np.float64]]:
+    """Get mean and standard deviation timeseries for a metric.
+
+    Args:
+        results: Aggregated results
+        metric: Name of the metric
+
+    Returns:
+        Tuple of (mean, lower_bound, upper_bound) arrays
+    """
+    arr = results.metric_arrays[metric]
+    mean = np.mean(arr, axis=0)
+    std = np.std(arr, axis=0)
+    return mean, mean - std, mean + std
+
+
+def get_final_performance(
+    results: dict[str, AggregatedResults],
+    metric: str = "squared_error",
+    window: int = 100,
+) -> dict[str, tuple[float, float]]:
+    """Get final performance (mean, std) for each config.
+
+    Args:
+        results: Dictionary of aggregated results
+        metric: Metric to evaluate
+        window: Number of final steps to average
+
+    Returns:
+        Dictionary mapping config name to (mean, std) tuple
+    """
+    performance: dict[str, tuple[float, float]] = {}
+    for name, agg in results.items():
+        arr = agg.metric_arrays[metric]
+        final_window = min(window, arr.shape[1])
+        final_means = np.mean(arr[:, -final_window:], axis=1)
+        performance[name] = (float(np.mean(final_means)), float(np.std(final_means)))
+    return performance
+
+
+def extract_hyperparameter_results(
+    results: dict[str, AggregatedResults],
+    metric: str = "squared_error",
+    param_extractor: Callable[[str], Any] | None = None,
+) -> dict[Any, tuple[float, float]]:
+    """Extract results indexed by hyperparameter value.
+
+    Useful for creating hyperparameter sensitivity plots.
+
+    Args:
+        results: Dictionary of aggregated results
+        metric: Metric to evaluate
+        param_extractor: Function to extract param value from config name
+
+    Returns:
+        Dictionary mapping param value to (mean, std) tuple
+    """
+    performance = get_final_performance(results, metric)
+
+    if param_extractor is None:
+        return {k: v for k, v in performance.items()}
+
+    return {param_extractor(name): perf for name, perf in performance.items()}