aiagents4pharma 1.9.0__py3-none-any.whl → 1.15.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (66) hide show
  1. aiagents4pharma/__init__.py +9 -6
  2. aiagents4pharma/configs/config.yaml +2 -1
  3. aiagents4pharma/configs/talk2biomodels/__init__.py +1 -0
  4. aiagents4pharma/configs/talk2biomodels/agents/t2b_agent/default.yaml +9 -3
  5. aiagents4pharma/configs/talk2biomodels/tools/__init__.py +4 -0
  6. aiagents4pharma/configs/talk2biomodels/tools/ask_question/__init__.py +3 -0
  7. aiagents4pharma/talk2biomodels/__init__.py +1 -0
  8. aiagents4pharma/talk2biomodels/agents/t2b_agent.py +14 -11
  9. aiagents4pharma/talk2biomodels/api/__init__.py +6 -0
  10. aiagents4pharma/talk2biomodels/api/kegg.py +83 -0
  11. aiagents4pharma/talk2biomodels/api/ols.py +72 -0
  12. aiagents4pharma/talk2biomodels/api/uniprot.py +35 -0
  13. aiagents4pharma/talk2biomodels/models/basico_model.py +29 -32
  14. aiagents4pharma/talk2biomodels/models/sys_bio_model.py +9 -6
  15. aiagents4pharma/talk2biomodels/states/state_talk2biomodels.py +24 -7
  16. aiagents4pharma/talk2biomodels/tests/test_api.py +57 -0
  17. aiagents4pharma/talk2biomodels/tests/test_ask_question.py +44 -0
  18. aiagents4pharma/talk2biomodels/tests/test_basico_model.py +7 -8
  19. aiagents4pharma/talk2biomodels/tests/test_get_annotation.py +171 -0
  20. aiagents4pharma/talk2biomodels/tests/test_getmodelinfo.py +26 -0
  21. aiagents4pharma/talk2biomodels/tests/test_integration.py +126 -0
  22. aiagents4pharma/talk2biomodels/tests/test_param_scan.py +68 -0
  23. aiagents4pharma/talk2biomodels/tests/test_query_article.py +76 -0
  24. aiagents4pharma/talk2biomodels/tests/test_search_models.py +28 -0
  25. aiagents4pharma/talk2biomodels/tests/test_simulate_model.py +39 -0
  26. aiagents4pharma/talk2biomodels/tests/test_steady_state.py +90 -0
  27. aiagents4pharma/talk2biomodels/tests/test_sys_bio_model.py +13 -7
  28. aiagents4pharma/talk2biomodels/tools/__init__.py +4 -0
  29. aiagents4pharma/talk2biomodels/tools/ask_question.py +59 -25
  30. aiagents4pharma/talk2biomodels/tools/get_annotation.py +304 -0
  31. aiagents4pharma/talk2biomodels/tools/get_modelinfo.py +5 -3
  32. aiagents4pharma/talk2biomodels/tools/load_arguments.py +114 -0
  33. aiagents4pharma/talk2biomodels/tools/parameter_scan.py +287 -0
  34. aiagents4pharma/talk2biomodels/tools/query_article.py +59 -0
  35. aiagents4pharma/talk2biomodels/tools/simulate_model.py +20 -89
  36. aiagents4pharma/talk2biomodels/tools/steady_state.py +167 -0
  37. aiagents4pharma/talk2competitors/__init__.py +5 -0
  38. aiagents4pharma/talk2competitors/agents/__init__.py +6 -0
  39. aiagents4pharma/talk2competitors/agents/main_agent.py +130 -0
  40. aiagents4pharma/talk2competitors/agents/s2_agent.py +75 -0
  41. aiagents4pharma/talk2competitors/config/__init__.py +5 -0
  42. aiagents4pharma/talk2competitors/config/config.py +110 -0
  43. aiagents4pharma/talk2competitors/state/__init__.py +5 -0
  44. aiagents4pharma/talk2competitors/state/state_talk2competitors.py +32 -0
  45. aiagents4pharma/talk2competitors/tests/__init__.py +3 -0
  46. aiagents4pharma/talk2competitors/tests/test_langgraph.py +274 -0
  47. aiagents4pharma/talk2competitors/tools/__init__.py +7 -0
  48. aiagents4pharma/talk2competitors/tools/s2/__init__.py +8 -0
  49. aiagents4pharma/talk2competitors/tools/s2/display_results.py +25 -0
  50. aiagents4pharma/talk2competitors/tools/s2/multi_paper_rec.py +132 -0
  51. aiagents4pharma/talk2competitors/tools/s2/search.py +119 -0
  52. aiagents4pharma/talk2competitors/tools/s2/single_paper_rec.py +141 -0
  53. aiagents4pharma/talk2knowledgegraphs/__init__.py +2 -1
  54. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_enrichments.py +39 -0
  55. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_ollama.py +117 -0
  56. aiagents4pharma/talk2knowledgegraphs/utils/__init__.py +5 -0
  57. aiagents4pharma/talk2knowledgegraphs/utils/enrichments/__init__.py +5 -0
  58. aiagents4pharma/talk2knowledgegraphs/utils/enrichments/enrichments.py +36 -0
  59. aiagents4pharma/talk2knowledgegraphs/utils/enrichments/ollama.py +123 -0
  60. {aiagents4pharma-1.9.0.dist-info → aiagents4pharma-1.15.0.dist-info}/METADATA +42 -23
  61. aiagents4pharma-1.15.0.dist-info/RECORD +102 -0
  62. aiagents4pharma/talk2biomodels/tests/test_langgraph.py +0 -240
  63. aiagents4pharma-1.9.0.dist-info/RECORD +0 -62
  64. {aiagents4pharma-1.9.0.dist-info → aiagents4pharma-1.15.0.dist-info}/LICENSE +0 -0
  65. {aiagents4pharma-1.9.0.dist-info → aiagents4pharma-1.15.0.dist-info}/WHEEL +0 -0
  66. {aiagents4pharma-1.9.0.dist-info → aiagents4pharma-1.15.0.dist-info}/top_level.txt +0 -0
aiagents4pharma-1.9.0.dist-info/RECORD DELETED
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