aiagents4pharma 1.8.1__py3-none-any.whl → 1.8.3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (34) hide show
  1. aiagents4pharma/__init__.py +1 -0
  2. aiagents4pharma/configs/__init__.py +5 -0
  3. aiagents4pharma/configs/config.yaml +3 -0
  4. aiagents4pharma/configs/talk2biomodels/__init__.py +5 -0
  5. aiagents4pharma/configs/talk2biomodels/agents/__init__.py +5 -0
  6. aiagents4pharma/configs/talk2biomodels/agents/t2b_agent/__init__.py +3 -0
  7. aiagents4pharma/configs/talk2biomodels/agents/t2b_agent/default.yaml +6 -0
  8. aiagents4pharma/talk2biomodels/agents/__init__.py +5 -0
  9. aiagents4pharma/talk2biomodels/agents/t2b_agent.py +93 -0
  10. aiagents4pharma/talk2biomodels/states/__init__.py +5 -0
  11. aiagents4pharma/talk2biomodels/states/state_talk2biomodels.py +24 -0
  12. aiagents4pharma/talk2biomodels/tests/__init__.py +3 -0
  13. aiagents4pharma/talk2biomodels/tests/test_basico_model.py +55 -0
  14. aiagents4pharma/talk2biomodels/tests/test_langgraph.py +189 -0
  15. aiagents4pharma/talk2biomodels/tests/test_sys_bio_model.py +57 -0
  16. aiagents4pharma/talk2cells/tests/scp_agent/test_scp_agent.py +23 -0
  17. aiagents4pharma/talk2cells/tools/scp_agent/__init__.py +6 -0
  18. aiagents4pharma/talk2cells/tools/scp_agent/display_studies.py +25 -0
  19. aiagents4pharma/talk2cells/tools/scp_agent/search_studies.py +79 -0
  20. aiagents4pharma/talk2competitors/__init__.py +0 -0
  21. aiagents4pharma/talk2knowledgegraphs/tests/__init__.py +0 -0
  22. aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_biobridge_primekg.py +242 -0
  23. aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_dataset.py +29 -0
  24. aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_primekg.py +73 -0
  25. aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_starkqa_primekg.py +116 -0
  26. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_embeddings.py +47 -0
  27. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_huggingface.py +45 -0
  28. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_sentencetransformer.py +40 -0
  29. {aiagents4pharma-1.8.1.dist-info → aiagents4pharma-1.8.3.dist-info}/METADATA +3 -3
  30. aiagents4pharma-1.8.3.dist-info/RECORD +62 -0
  31. aiagents4pharma-1.8.1.dist-info/RECORD +0 -35
  32. {aiagents4pharma-1.8.1.dist-info → aiagents4pharma-1.8.3.dist-info}/LICENSE +0 -0
  33. {aiagents4pharma-1.8.1.dist-info → aiagents4pharma-1.8.3.dist-info}/WHEEL +0 -0
  34. {aiagents4pharma-1.8.1.dist-info → aiagents4pharma-1.8.3.dist-info}/top_level.txt +0 -0
aiagents4pharma-1.8.3.dist-info/RECORD ADDED
@@ -0,0 +1,62 @@
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+ aiagents4pharma/__init__.py,sha256=X-Mpbf4sfjMvoxiTTl4qFgCxrWZgtVgRjnjX6gbUtCg,173
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+ aiagents4pharma/configs/__init__.py,sha256=hNkSrXw1Ix1HhkGn_aaidr2coBYySfM0Hm_pMeRcX7k,76
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+ aiagents4pharma/configs/config.yaml,sha256=8y8uG6Dzx4-9jyb6hZ8r4lOJz5gA_sQhCiSCgXL5l7k,65
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+ aiagents4pharma/configs/talk2biomodels/__init__.py,sha256=5ah__-8XyRblwT0U1ByRigNjt_GyCheu7zce4aM-eZE,68
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+ aiagents4pharma/configs/talk2biomodels/agents/__init__.py,sha256=_ZoG8snICK2bidWtc2KOGs738LWg9_r66V9mOMnEb-E,71
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+ aiagents4pharma/configs/talk2biomodels/agents/t2b_agent/__init__.py,sha256=-fAORvyFmG2iSvFOFDixmt9OTQRR58y89uhhu2EgbA8,46
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+ aiagents4pharma/configs/talk2biomodels/agents/t2b_agent/default.yaml,sha256=-IwTmcZFlgUzxxHgcaR9jmbVKCP3IFEHtqzAD4pek6s,200
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+ aiagents4pharma/talk2biomodels/__init__.py,sha256=9MuyHb5KTf5ufeyq7fu5xoLEwVT688DFOWuKuzdWG9o,140
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+ aiagents4pharma/talk2biomodels/agents/__init__.py,sha256=sn5-fREjMdEvb-OUan3iOqrgYGjplNx3J8hYOaW0Po8,128
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+ aiagents4pharma/talk2biomodels/agents/t2b_agent.py,sha256=nVWxHR-QMZDqDwxvDga_CvLo7LHP5cWCDl6lXCMcRO0,3264
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+ aiagents4pharma/talk2biomodels/models/__init__.py,sha256=5fTHHm3PVloYPNKXbgNlcPgv3-u28ZquxGydFYDfhJA,122
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+ aiagents4pharma/talk2biomodels/models/basico_model.py,sha256=js7ORLwbJPaIsko5oRToMMCh4l8LsN292OIvFzTfvRg,4946
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+ aiagents4pharma/talk2biomodels/models/sys_bio_model.py,sha256=ylpPba2SA8kl68q3k1kJbiUdRYplPHykyslTQLDZ19I,1995
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+ aiagents4pharma/talk2biomodels/states/__init__.py,sha256=YLg1-N0D9qyRRLRqwqfLCLAqZYDtMVZTfI8Y0b_4tbA,139
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+ aiagents4pharma/talk2biomodels/states/state_talk2biomodels.py,sha256=cneAsNgtzDoL3_gkC4gf7h69BfBOY7rASpYWz4I8jjI,761
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+ aiagents4pharma/talk2biomodels/tests/__init__.py,sha256=Jbw5tJxSrjGoaK5IX3pJWDCNzhrVQ10lkYq2oQ_KQD8,45
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+ aiagents4pharma/talk2biomodels/tests/test_basico_model.py,sha256=uqhbojcA4RRTDRUAF9B9DzKCo3OOIOWMDK8IViG0gsM,2038
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+ aiagents4pharma/talk2biomodels/tests/test_langgraph.py,sha256=z3bS_LE2s9kba2fFM5SWQy1uIalQBbCnGJuakQjnKTQ,7365
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+ aiagents4pharma/talk2biomodels/tests/test_sys_bio_model.py,sha256=nA6bRT16627mw8qzrv7cHM9AByHb9F0kxAuwOpE-avA,1961
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+ aiagents4pharma/talk2biomodels/tools/__init__.py,sha256=8hAT6z1OO8N9HRylh6fwoqyjYlGdpkngkElBNqH40Zo,237
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+ aiagents4pharma/talk2biomodels/tools/ask_question.py,sha256=UEdT46DIFZHlAOF4cNX4_s7VjHvbbiGpNmEY2-XW2iA,2655
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+ aiagents4pharma/talk2biomodels/tools/custom_plotter.py,sha256=BfLSivWqtRVZDeqD7RP5sgZP6B9rET47IWdNrA3gmIE,3825
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+ aiagents4pharma/talk2biomodels/tools/get_modelinfo.py,sha256=czxjRa9jvjTow-POGU5wSV8_lwfknAezBnzCFA0gQ8E,5189
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+ aiagents4pharma/talk2biomodels/tools/load_biomodel.py,sha256=pyVzLQoMnuJYEwsjeOlqcUrbU1F1Z-pNlgkhFaoKpy0,689
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+ aiagents4pharma/talk2biomodels/tools/search_models.py,sha256=Iq2ddofOOfZYtAurCISq3bAq5rbwB3l_rL1lgEFyFCI,2653
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+ aiagents4pharma/talk2biomodels/tools/simulate_model.py,sha256=hBRrSLVGcaT157FCe8ajVKJZ2fi9CJhGeniGLaZJ-KE,6251
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+ aiagents4pharma/talk2cells/__init__.py,sha256=zmOP5RAhabgKIQP-W4P4qKME2tG3fhAXM3MeO5_H8kE,120
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+ aiagents4pharma/talk2cells/agents/__init__.py,sha256=38nK2a_lEFRjO3qD6Fo9a3983ZCYat6hmJKWY61y2Mo,128
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+ aiagents4pharma/talk2cells/agents/scp_agent.py,sha256=gDMfhUNWHa_XWOqm1Ql6yLAdI_7bnIk5sRYn43H2sYk,3090
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+ aiagents4pharma/talk2cells/states/__init__.py,sha256=e4s8pHZaR6UC42DtmsOzCVms5gxp5QEzLE4bG54YYko,135
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+ aiagents4pharma/talk2cells/states/state_talk2cells.py,sha256=en5LikmabPZA6lLVpmYXff0Q3Fno0N2PBSMxk3gLWaE,253
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+ aiagents4pharma/talk2cells/tests/scp_agent/test_scp_agent.py,sha256=f8bsUXvEElvYM5KGvpPzI1xOR5Y_zpm3_Jzk7gCX1CE,732
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+ aiagents4pharma/talk2cells/tools/__init__.py,sha256=38nK2a_lEFRjO3qD6Fo9a3983ZCYat6hmJKWY61y2Mo,128
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+ aiagents4pharma/talk2cells/tools/scp_agent/__init__.py,sha256=s7g0lyH1lMD9pcWHLPtwRJRvzmTh2II7DrxyLulpjmQ,163
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+ aiagents4pharma/talk2cells/tools/scp_agent/display_studies.py,sha256=6q59gh_NQaiOU2rn55A3sIIFKlXi4SK3iKgySvUDrtQ,600
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+ aiagents4pharma/talk2cells/tools/scp_agent/search_studies.py,sha256=MLe-twtFnOu-P8P9diYq7jvHBHbWFRRCZLcfpUzqPMg,2806
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+ aiagents4pharma/talk2competitors/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ aiagents4pharma/talk2knowledgegraphs/__init__.py,sha256=SW7Ys2A4eXyFtizNPdSw91SHOPVUBGBsrCQ7TqwSUL0,91
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+ aiagents4pharma/talk2knowledgegraphs/datasets/__init__.py,sha256=L3gPuHskSegmtXskVrLIYr7FXe_ibKgJ2GGr1_Wok6k,173
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+ aiagents4pharma/talk2knowledgegraphs/datasets/biobridge_primekg.py,sha256=QlzDXmXREoa9MA6-GwzqRjdzndQeGBAF11Td6NFk_9Y,23426
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+ aiagents4pharma/talk2knowledgegraphs/datasets/dataset.py,sha256=-LaPLse8BkALqwFetNK7wch2dt9Dz6QKGKZKBKM6bIk,409
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+ aiagents4pharma/talk2knowledgegraphs/datasets/primekg.py,sha256=KBMhCJ7yjMWqQJJctFYdpjYAlwv48Jl6i1dddXP4f08,7599
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+ aiagents4pharma/talk2knowledgegraphs/datasets/starkqa_primekg.py,sha256=Y-6-nORsnBJlU6rH0skyfr9S9J4PfTWK-af_p5UuknQ,7483
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+ aiagents4pharma/talk2knowledgegraphs/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_biobridge_primekg.py,sha256=crH0eFA3P8P6IYzi1UWNa4YvRVrtlBzoScf9NaE1lDk,9827
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+ aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_dataset.py,sha256=NFUlsZvhfIrkF4YenWfahrLK93Xhm5UYEGG_uYN2LVM,566
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+ aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_primekg.py,sha256=Pvu0r93CpnhjkfMxc-EiVLpAJ04FdW9iTamCnetu654,2272
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+ aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_starkqa_primekg.py,sha256=TuIsqcN1Mww3DTqGk6ebgJBWzUWdMWEq2yRQuYSFqvA,4416
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+ aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_embeddings.py,sha256=uYFoE_6zeU10_1mLLAHUr5c4S2XZMSc0Q_860o-KWEw,1517
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+ aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_huggingface.py,sha256=EINWyXg_3AMHF3WzFLhIUiFDuaEhTVHBvVAJr8VtMDg,1624
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+ aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_sentencetransformer.py,sha256=Qxo6WeIDRy8aLh1tNKw0kSlzmUj3MtTak63oW2YwB24,1327
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+ aiagents4pharma/talk2knowledgegraphs/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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+ aiagents4pharma/talk2knowledgegraphs/utils/kg_utils.py,sha256=6vQnPkeOWae_8jePjhma3sJuMTngy0I0tqzdFt6OqKg,2507
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+ aiagents4pharma/talk2knowledgegraphs/utils/embeddings/__init__.py,sha256=xRb0x7SoAb0nSVZYgjrqxWvENOMDuqIdL43NMjoOaCs,153
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+ aiagents4pharma/talk2knowledgegraphs/utils/embeddings/embeddings.py,sha256=1nGznrAj-xT0xuSMBGz2dOujJ7M_IwSR84njxtxsy9A,2523
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+ aiagents4pharma/talk2knowledgegraphs/utils/embeddings/huggingface.py,sha256=2vi_elf6EgzfagFAO5QnL3a_aXZyN7B1EBziu44MTfM,3806
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+ aiagents4pharma/talk2knowledgegraphs/utils/embeddings/sentence_transformer.py,sha256=36iKlisOpMtGR5xfTAlSHXWvPqVC_Jbezod8kbBBMVg,2136
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+ aiagents4pharma-1.8.3.dist-info/LICENSE,sha256=IcIbyB1Hyk5ZDah03VNQvJkbNk2hkBCDqQ8qtnCvB4Q,1077
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+ aiagents4pharma-1.8.3.dist-info/METADATA,sha256=qIsojNDT5C2dKHbTLBc7NfcCUyin52GWeP3G0GfU-mE,7988
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+ aiagents4pharma-1.8.3.dist-info/WHEEL,sha256=In9FTNxeP60KnTkGw7wk6mJPYd_dQSjEZmXdBdMCI-8,91
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+ aiagents4pharma-1.8.3.dist-info/top_level.txt,sha256=-AH8rMmrSnJtq7HaAObS78UU-cTCwvX660dSxeM7a0A,16
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+ aiagents4pharma-1.8.3.dist-info/RECORD,,
aiagents4pharma-1.8.1.dist-info/RECORD DELETED
@@ -1,35 +0,0 @@
1
- aiagents4pharma/__init__.py,sha256=ds5Ft1k2ww2m7N-yv5ZyymBw0LBuHVjwC9TuekQBL_c,151
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- aiagents4pharma/talk2biomodels/__init__.py,sha256=9MuyHb5KTf5ufeyq7fu5xoLEwVT688DFOWuKuzdWG9o,140
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- aiagents4pharma/talk2biomodels/models/__init__.py,sha256=5fTHHm3PVloYPNKXbgNlcPgv3-u28ZquxGydFYDfhJA,122
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- aiagents4pharma/talk2biomodels/models/basico_model.py,sha256=js7ORLwbJPaIsko5oRToMMCh4l8LsN292OIvFzTfvRg,4946
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- aiagents4pharma/talk2biomodels/models/sys_bio_model.py,sha256=ylpPba2SA8kl68q3k1kJbiUdRYplPHykyslTQLDZ19I,1995
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- aiagents4pharma/talk2biomodels/tools/__init__.py,sha256=8hAT6z1OO8N9HRylh6fwoqyjYlGdpkngkElBNqH40Zo,237
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- aiagents4pharma/talk2biomodels/tools/ask_question.py,sha256=UEdT46DIFZHlAOF4cNX4_s7VjHvbbiGpNmEY2-XW2iA,2655
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- aiagents4pharma/talk2biomodels/tools/custom_plotter.py,sha256=BfLSivWqtRVZDeqD7RP5sgZP6B9rET47IWdNrA3gmIE,3825
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- aiagents4pharma/talk2biomodels/tools/get_modelinfo.py,sha256=czxjRa9jvjTow-POGU5wSV8_lwfknAezBnzCFA0gQ8E,5189
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- aiagents4pharma/talk2biomodels/tools/load_biomodel.py,sha256=pyVzLQoMnuJYEwsjeOlqcUrbU1F1Z-pNlgkhFaoKpy0,689
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- aiagents4pharma/talk2biomodels/tools/search_models.py,sha256=Iq2ddofOOfZYtAurCISq3bAq5rbwB3l_rL1lgEFyFCI,2653
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- aiagents4pharma/talk2biomodels/tools/simulate_model.py,sha256=hBRrSLVGcaT157FCe8ajVKJZ2fi9CJhGeniGLaZJ-KE,6251
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- aiagents4pharma/talk2cells/__init__.py,sha256=zmOP5RAhabgKIQP-W4P4qKME2tG3fhAXM3MeO5_H8kE,120
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- aiagents4pharma/talk2cells/agents/__init__.py,sha256=38nK2a_lEFRjO3qD6Fo9a3983ZCYat6hmJKWY61y2Mo,128
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- aiagents4pharma/talk2cells/agents/scp_agent.py,sha256=gDMfhUNWHa_XWOqm1Ql6yLAdI_7bnIk5sRYn43H2sYk,3090
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- aiagents4pharma/talk2cells/states/state_talk2cells.py,sha256=en5LikmabPZA6lLVpmYXff0Q3Fno0N2PBSMxk3gLWaE,253
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- aiagents4pharma/talk2cells/tools/__init__.py,sha256=38nK2a_lEFRjO3qD6Fo9a3983ZCYat6hmJKWY61y2Mo,128
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- aiagents4pharma/talk2knowledgegraphs/__init__.py,sha256=SW7Ys2A4eXyFtizNPdSw91SHOPVUBGBsrCQ7TqwSUL0,91
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- aiagents4pharma/talk2knowledgegraphs/datasets/__init__.py,sha256=L3gPuHskSegmtXskVrLIYr7FXe_ibKgJ2GGr1_Wok6k,173
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- aiagents4pharma/talk2knowledgegraphs/datasets/biobridge_primekg.py,sha256=QlzDXmXREoa9MA6-GwzqRjdzndQeGBAF11Td6NFk_9Y,23426
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- aiagents4pharma/talk2knowledgegraphs/datasets/dataset.py,sha256=-LaPLse8BkALqwFetNK7wch2dt9Dz6QKGKZKBKM6bIk,409
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- aiagents4pharma/talk2knowledgegraphs/datasets/primekg.py,sha256=KBMhCJ7yjMWqQJJctFYdpjYAlwv48Jl6i1dddXP4f08,7599
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- aiagents4pharma/talk2knowledgegraphs/datasets/starkqa_primekg.py,sha256=Y-6-nORsnBJlU6rH0skyfr9S9J4PfTWK-af_p5UuknQ,7483
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- aiagents4pharma/talk2knowledgegraphs/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- aiagents4pharma/talk2knowledgegraphs/utils/kg_utils.py,sha256=6vQnPkeOWae_8jePjhma3sJuMTngy0I0tqzdFt6OqKg,2507
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- aiagents4pharma/talk2knowledgegraphs/utils/embeddings/__init__.py,sha256=xRb0x7SoAb0nSVZYgjrqxWvENOMDuqIdL43NMjoOaCs,153
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- aiagents4pharma/talk2knowledgegraphs/utils/embeddings/huggingface.py,sha256=2vi_elf6EgzfagFAO5QnL3a_aXZyN7B1EBziu44MTfM,3806
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- aiagents4pharma/talk2knowledgegraphs/utils/embeddings/sentence_transformer.py,sha256=36iKlisOpMtGR5xfTAlSHXWvPqVC_Jbezod8kbBBMVg,2136
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- aiagents4pharma-1.8.1.dist-info/LICENSE,sha256=IcIbyB1Hyk5ZDah03VNQvJkbNk2hkBCDqQ8qtnCvB4Q,1077
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- aiagents4pharma-1.8.1.dist-info/METADATA,sha256=IT0veyP78F4miSANCtd1knzOq5kjmmFn5g2KLhO3Su8,7988
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- aiagents4pharma-1.8.1.dist-info/RECORD,,