aiagents4pharma 1.47.0__py3-none-any.whl → 1.48.1__py3-none-any.whl

aiagents4pharma/talk2aiagents4pharma/Dockerfile

@@ -33,6 +33,7 @@ RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-ins
   && update-alternatives --install /usr/bin/python python /usr/bin/python${PYTHON_VERSION} 1
 
 FROM python-install AS uv-install
+ARG INSTALL_CUDA=true
 WORKDIR /app
 
 # Install UV package manager and dependencies
@@ -42,14 +43,19 @@ RUN curl -LsSf https://astral.sh/uv/install.sh | sh && \
   export UV_PROJECT_ENVIRONMENT="/opt/venv" && \
   uv sync --frozen --extra dev --no-install-project --python python${PYTHON_VERSION} && \
   . /opt/venv/bin/activate && \
+  if [ "$INSTALL_CUDA" = "true" ]; then \
   uv pip install \
   --extra-index-url=https://pypi.nvidia.com \
   --index-strategy unsafe-best-match \
-  cudf-cu12 dask-cudf-cu12 && \
+  cudf-cu12 dask-cudf-cu12; \
+  else \
+  echo "Skipping RAPIDS packages for CPU build"; \
+  fi && \
   uv cache clean
 
 FROM ${BASE_IMAGE} AS runtime
 ARG PYTHON_VERSION=3.12
+ARG INSTALL_CUDA=true
 LABEL maintainer="talk2aiagents4pharma"
 LABEL version="1.0.0"
 LABEL description="AI Agents for Pharma - Streamlit Application"
@@ -58,6 +64,7 @@ LABEL description="AI Agents for Pharma - Streamlit Application"
 RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
   ca-certificates \
   curl \
+  gnupg \
   libmagic1 \
   libopenblas0 \
   libomp5 \
@@ -66,6 +73,27 @@ RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-ins
   && update-alternatives --install /usr/bin/python3 python3 /usr/bin/python${PYTHON_VERSION} 1 \
   && update-alternatives --install /usr/bin/python python /usr/bin/python${PYTHON_VERSION} 1
 
+# Install CUDA runtime libraries required by cudf/cupy (optional)
+RUN if [ "$INSTALL_CUDA" = "true" ]; then \
+  curl -fsSL https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2404/x86_64/3bf863cc.pub \
+  | gpg --dearmor -o /usr/share/keyrings/nvidia-cuda-keyring.gpg && \
+  echo "deb [signed-by=/usr/share/keyrings/nvidia-cuda-keyring.gpg] https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2404/x86_64/ /" \
+  > /etc/apt/sources.list.d/nvidia-cuda.list && \
+  apt-get update && \
+  DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
+  cuda-cudart-12-6 \
+  cuda-cudart-dev-12-6 \
+  cuda-nvrtc-12-6 \
+  cuda-nvrtc-dev-12-6 \
+  libcublas-12-6 \
+  libcusparse-12-6 \
+  && rm -rf /var/lib/apt/lists/*; \
+  else \
+  echo "Skipping CUDA installation"; \
+  fi
+
+ENV LD_LIBRARY_PATH=/usr/local/cuda/lib64
+
 # Copy UV virtual environment from build stage
 COPY --from=uv-install /opt/venv /opt/venv
 

aiagents4pharma/talk2aiagents4pharma/docker-compose/cpu/.env.example

@@ -11,11 +11,11 @@ LANGCHAIN_API_KEY=your_langchain_api_key_here
 NVIDIA_API_KEY=your_nvidia_api_key_here
 
 # Set environment variables for data loader
-MILVUS_HOST=localhost
+MILVUS_HOST=milvus-standalone
 MILVUS_PORT=19530
 MILVUS_USER=root
 MILVUS_PASSWORD=Milvus
-MILVUS_DATABASE=your_database_name_here
+MILVUS_DATABASE=t2kg_primekg
 
 # Specify the data directory for multimodal data to your own data directory
 # DATA_DIR=/your_absolute_path_to_your_data_dir/

aiagents4pharma/talk2aiagents4pharma/docker-compose/cpu/docker-compose.yml

@@ -4,7 +4,7 @@ services:
   # talk2aiagents4pharma with automatic data loading via entrypoint
   talk2aiagents4pharma:
     container_name: talk2aiagents4pharma
-    image: vpatientengine/talk2aiagents4pharma:latest
+    image: vpatientengine/talk2aiagents4pharma:latest-cpu
     platform: linux/amd64
     ports:
       - "8501:8501"

aiagents4pharma/talk2aiagents4pharma/docker-compose/gpu/.env.example

@@ -11,11 +11,11 @@ LANGCHAIN_API_KEY=your_langchain_api_key_here
 NVIDIA_API_KEY=your_nvidia_api_key_here
 
 # Set environment variables for data loader
-MILVUS_HOST=localhost
+MILVUS_HOST=milvus-standalone
 MILVUS_PORT=19530
 MILVUS_USER=root
 MILVUS_PASSWORD=Milvus
-MILVUS_DATABASE=your_database_name_here
+MILVUS_DATABASE=t2kg_primekg
 
 # Specify the data directory for multimodal data to your own data directory
 # DATA_DIR=/your_absolute_path_to_your_data_dir/

aiagents4pharma/talk2aiagents4pharma/docker-compose/gpu/docker-compose.yml

@@ -4,7 +4,7 @@ services:
   # talk2aiagents4pharma with automatic data loading via entrypoint
   talk2aiagents4pharma:
     container_name: talk2aiagents4pharma
-    image: vpatientengine/talk2aiagents4pharma:latest
+    image: vpatientengine/talk2aiagents4pharma:latest-gpu
     platform: linux/amd64
     ports:
       - "8501:8501"

aiagents4pharma/talk2aiagents4pharma/install.md

@@ -53,7 +53,7 @@ LANGCHAIN_API_KEY=your_langchain_api_key_here
 NVIDIA_API_KEY=your_nvidia_api_key_here
 
 # Set environment variables for data loader
-MILVUS_HOST=localhost
+MILVUS_HOST=milvus-standalone
 MILVUS_PORT=19530
 MILVUS_USER=root
 MILVUS_PASSWORD=Milvus
@@ -121,3 +121,34 @@ To resolve permission issues, you can:
 
 - Review the official Docker documentation on [Windows permission requirements](https://docs.docker.com/desktop/setup/install/windows-permission-requirements/).
 - Alternatively, follow the community discussion and solutions on [Docker Community Forums](https://forums.docker.com/t/error-when-trying-to-run-windows-containers-docker-client-must-be-run-with-elevated-privileges/136619).
+
+---
+
+### Build Images Locally
+
+If you prefer to build the images yourself:
+
+```sh
+git clone https://github.com/VirtualPatientEngine/AIAgents4Pharma.git
+cd AIAgents4Pharma
+```
+
+**GPU build** (overwrites the `latest-gpu` tag locally)
+
+```sh
+docker build --platform=linux/amd64 \
+  -t vpatientengine/talk2aiagents4pharma:latest-gpu \
+  -f aiagents4pharma/talk2aiagents4pharma/Dockerfile \
+  --build-arg INSTALL_CUDA=true \
+  .
+```
+
+**CPU build** (overwrites the `latest-cpu` tag locally)
+
+```sh
+docker build --platform=linux/amd64 \
+  -t vpatientengine/talk2aiagents4pharma:latest-cpu \
+  -f aiagents4pharma/talk2aiagents4pharma/Dockerfile \
+  --build-arg INSTALL_CUDA=false \
+  .
+```

aiagents4pharma/talk2knowledgegraphs/Dockerfile

@@ -33,6 +33,7 @@ RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-ins
   && update-alternatives --install /usr/bin/python python /usr/bin/python${PYTHON_VERSION} 1
 
 FROM python-install AS uv-install
+ARG INSTALL_CUDA=true
 WORKDIR /app
 
 # Install UV package manager and dependencies
@@ -42,14 +43,19 @@ RUN curl -LsSf https://astral.sh/uv/install.sh | sh && \
   export UV_PROJECT_ENVIRONMENT="/opt/venv" && \
   uv sync --frozen --extra dev --no-install-project --python python${PYTHON_VERSION} && \
   . /opt/venv/bin/activate && \
-  uv pip install \
-  --extra-index-url=https://pypi.nvidia.com \
-  --index-strategy unsafe-best-match \
-  cudf-cu12 dask-cudf-cu12 && \
+  if [ "$INSTALL_CUDA" = "true" ]; then \
+    uv pip install \
+      --extra-index-url=https://pypi.nvidia.com \
+      --index-strategy unsafe-best-match \
+      cudf-cu12 dask-cudf-cu12; \
+  else \
+    echo "Skipping RAPIDS packages for CPU build"; \
+  fi && \
   uv cache clean
 
 FROM ${BASE_IMAGE} AS runtime
 ARG PYTHON_VERSION=3.12
+ARG INSTALL_CUDA=true
 LABEL maintainer="talk2knowledgegraphs"
 LABEL version="1.0.0"
 LABEL description="AI Agents for Pharma - Knowledge Graphs Application"
@@ -58,6 +64,7 @@ LABEL description="AI Agents for Pharma - Knowledge Graphs Application"
 RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
   ca-certificates \
   curl \
+  gnupg \
   libmagic1 \
   libopenblas0 \
   libomp5 \
@@ -66,6 +73,27 @@ RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-ins
   && update-alternatives --install /usr/bin/python3 python3 /usr/bin/python${PYTHON_VERSION} 1 \
   && update-alternatives --install /usr/bin/python python /usr/bin/python${PYTHON_VERSION} 1
 
+# Install CUDA runtime libraries required by cudf/cupy (optional)
+RUN if [ "$INSTALL_CUDA" = "true" ]; then \
+    curl -fsSL https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2404/x86_64/3bf863cc.pub \
+      | gpg --dearmor -o /usr/share/keyrings/nvidia-cuda-keyring.gpg && \
+    echo "deb [signed-by=/usr/share/keyrings/nvidia-cuda-keyring.gpg] https://developer.download.nvidia.com/compute/cuda/repos/ubuntu2404/x86_64/ /" \
+      > /etc/apt/sources.list.d/nvidia-cuda.list && \
+    apt-get update && \
+    DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends \
+      cuda-cudart-12-6 \
+      cuda-cudart-dev-12-6 \
+      cuda-nvrtc-12-6 \
+      cuda-nvrtc-dev-12-6 \
+      libcublas-12-6 \
+      libcusparse-12-6 \
+    && rm -rf /var/lib/apt/lists/*; \
+  else \
+    echo "Skipping CUDA installation"; \
+  fi
+
+ENV LD_LIBRARY_PATH=/usr/local/cuda/lib64
+
 # Copy UV virtual environment from build stage
 COPY --from=uv-install /opt/venv /opt/venv
 

aiagents4pharma/talk2knowledgegraphs/docker-compose/cpu/.env.example

@@ -11,11 +11,11 @@ LANGCHAIN_API_KEY=your_langchain_api_key_here
 NVIDIA_API_KEY=your_nvidia_api_key_here
 
 # Set environment variables for data loader
-MILVUS_HOST=localhost
+MILVUS_HOST=milvus-standalone
 MILVUS_PORT=19530
 MILVUS_USER=root
 MILVUS_PASSWORD=Milvus
-MILVUS_DATABASE=your_database_name_here
+MILVUS_DATABASE=t2kg_primekg
 
 # Specify the data directory for multimodal data to your own data directory
 # DATA_DIR=/your_absolute_path_to_your_data_dir/

aiagents4pharma/talk2knowledgegraphs/docker-compose/cpu/docker-compose.yml

@@ -4,7 +4,7 @@ services:
   # talk2knowledgegraphs with automatic data loading via entrypoint
   talk2knowledgegraphs:
     container_name: talk2knowledgegraphs
-    image: vpatientengine/talk2knowledgegraphs:latest
+    image: vpatientengine/talk2knowledgegraphs:latest-cpu
     platform: linux/amd64
     ports:
       - "8501:8501"

aiagents4pharma/talk2knowledgegraphs/docker-compose/gpu/.env.example

@@ -11,11 +11,11 @@ LANGCHAIN_API_KEY=your_langchain_api_key_here
 NVIDIA_API_KEY=your_nvidia_api_key_here
 
 # Set environment variables for data loader
-MILVUS_HOST=localhost
+MILVUS_HOST=milvus-standalone
 MILVUS_PORT=19530
 MILVUS_USER=root
 MILVUS_PASSWORD=Milvus
-MILVUS_DATABASE=your_database_name_here
+MILVUS_DATABASE=t2kg_primekg
 
 # Specify the data directory for multimodal data to your own data directory
 # DATA_DIR=/your_absolute_path_to_your_data_dir/

aiagents4pharma/talk2knowledgegraphs/docker-compose/gpu/docker-compose.yml

@@ -4,7 +4,7 @@ services:
   # talk2knowledgegraphs with automatic data loading via entrypoint
   talk2knowledgegraphs:
     container_name: talk2knowledgegraphs
-    image: vpatientengine/talk2knowledgegraphs:latest
+    image: vpatientengine/talk2knowledgegraphs:latest-gpu
     platform: linux/amd64
     ports:
       - "8501:8501"

aiagents4pharma/talk2knowledgegraphs/install.md

@@ -64,7 +64,7 @@ LANGCHAIN_API_KEY=your_langchain_api_key_here
 NVIDIA_API_KEY=your_nvidia_api_key_here
 
 # Set environment variables for data loader
-MILVUS_HOST=localhost
+MILVUS_HOST=milvus-standalone
 MILVUS_PORT=19530
 MILVUS_USER=root
 MILVUS_PASSWORD=Milvus
@@ -132,3 +132,34 @@ To resolve permission issues, you can:
 
 - Review the official Docker documentation on [Windows permission requirements](https://docs.docker.com/desktop/setup/install/windows-permission-requirements/).
 - Alternatively, follow the community discussion and solutions on [Docker Community Forums](https://forums.docker.com/t/error-when-trying-to-run-windows-containers-docker-client-must-be-run-with-elevated-privileges/136619).
+
+---
+
+### Build Images Locally
+
+To build the Docker images yourself:
+
+```sh
+git clone https://github.com/VirtualPatientEngine/AIAgents4Pharma.git
+cd AIAgents4Pharma
+```
+
+**GPU build** (overwrites the `latest-gpu` tag locally)
+
+```sh
+docker build --platform=linux/amd64 \
+  -t vpatientengine/talk2knowledgegraphs:latest-gpu \
+  -f aiagents4pharma/talk2knowledgegraphs/Dockerfile \
+  --build-arg INSTALL_CUDA=true \
+  .
+```
+
+**CPU build** (overwrites the `latest-cpu` tag locally)
+
+```sh
+docker build --platform=linux/amd64 \
+  -t vpatientengine/talk2knowledgegraphs:latest-cpu \
+  -f aiagents4pharma/talk2knowledgegraphs/Dockerfile \
+  --build-arg INSTALL_CUDA=false \
+  .
+```

aiagents4pharma/talk2knowledgegraphs/milvus_data_dump.py

@@ -150,6 +150,7 @@ class DynamicDataLoader:
         self.normalize_vectors = self.use_gpu  # Only normalize for GPU (original logic)
         self.vector_index_type = "GPU_CAGRA" if self.use_gpu else "HNSW"
         self.metric_type = "IP" if self.use_gpu else "COSINE"
+        self.vector_index_params = self._build_vector_index_params()
 
         logger.info("Loader Configuration:")
         logger.info("  Using GPU acceleration: %s", self.use_gpu)
@@ -284,6 +285,29 @@ class DynamicDataLoader:
             else:
                 return list(data)
 
+    def _build_vector_index_params(self) -> dict[str, Any]:
+        """Return index params tuned for the selected backend."""
+        base_params: dict[str, Any] = {
+            "index_type": self.vector_index_type,
+            "metric_type": self.metric_type,
+        }
+
+        if self.vector_index_type == "GPU_CAGRA":
+            base_params["params"] = {
+                "graph_degree": int(os.getenv("CAGRA_GRAPH_DEGREE", "32")),
+                "intermediate_graph_degree": int(
+                    os.getenv("CAGRA_INTERMEDIATE_GRAPH_DEGREE", "40")
+                ),
+                "search_width": int(os.getenv("CAGRA_SEARCH_WIDTH", "64")),
+            }
+        elif self.vector_index_type == "HNSW":
+            base_params["params"] = {
+                "M": int(os.getenv("HNSW_M", "16")),
+                "efConstruction": int(os.getenv("HNSW_EF_CONSTRUCTION", "200")),
+            }
+
+        return base_params
+
     def connect_to_milvus(self):
         """Connect to Milvus and setup database."""
         logger.info("Connecting to Milvus at %s:%s", self.milvus_host, self.milvus_port)
@@ -442,10 +466,7 @@ class DynamicDataLoader:
         )
         collection.create_index(
             field_name="desc_emb",
-            index_params={
-                "index_type": self.vector_index_type,
-                "metric_type": self.metric_type,
-            },
+            index_params=self.vector_index_params.copy(),
             index_name="desc_emb_index",
         )
 
@@ -569,18 +590,12 @@ class DynamicDataLoader:
             )
             collection.create_index(
                 field_name="desc_emb",
-                index_params={
-                    "index_type": self.vector_index_type,
-                    "metric_type": self.metric_type,
-                },
+                index_params=self.vector_index_params.copy(),
                 index_name="desc_emb_index",
             )
             collection.create_index(
                 field_name="feat_emb",
-                index_params={
-                    "index_type": self.vector_index_type,
-                    "metric_type": self.metric_type,
-                },
+                index_params=self.vector_index_params.copy(),
                 index_name="feat_emb_index",
             )
 
@@ -706,10 +721,7 @@ class DynamicDataLoader:
         )
         collection.create_index(
             field_name="feat_emb",
-            index_params={
-                "index_type": self.vector_index_type,
-                "metric_type": self.metric_type,
-            },
+            index_params=self.vector_index_params.copy(),
             index_name="feat_emb_index",
         )
 
@@ -796,8 +808,7 @@ class DynamicDataLoader:
                 logger.info("  %s: %d entities", coll, collection.num_entities)
 
         except Exception:
-            logger.error("Error occurred during data loading")
-            logger.debug("Detailed error information available in debug mode")
+            logger.exception("Error occurred during data loading")
             raise
 
 
@@ -867,8 +878,7 @@ def main():
         logger.info("Data loading interrupted by user")
         sys.exit(1)
     except Exception:
-        logger.error("Fatal error occurred during data loading")
-        logger.debug("Detailed error information available in debug mode")
+        logger.exception("Fatal error occurred during data loading")
         sys.exit(1)
 
 

{aiagents4pharma-1.47.0.dist-info → aiagents4pharma-1.48.1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: aiagents4pharma
-Version: 1.47.0
+Version: 1.48.1
 Summary: AI Agents for drug discovery, drug development, and other pharmaceutical R&D.
 License-File: LICENSE
 Classifier: License :: OSI Approved :: MIT License

{aiagents4pharma-1.47.0.dist-info → aiagents4pharma-1.48.1.dist-info}/RECORD

@@ -1,9 +1,9 @@
 aiagents4pharma/__init__.py,sha256=B-tLRCbWgti-jlCnW_qknNKrG4j1t9nhBb-gXaz0Wtg,187
 aiagents4pharma/talk2aiagents4pharma/.dockerignore,sha256=-hAM7RzkGbjDeU411-kXOmYzNfl3Z9OlLWvN9zMDAXE,89
-aiagents4pharma/talk2aiagents4pharma/Dockerfile,sha256=J2QvwifcCxtz9EzPaq99zhSygHV9ADsB5ZQ_cmiwATI,3533
+aiagents4pharma/talk2aiagents4pharma/Dockerfile,sha256=yozGxCQVzd98dLs7DTLyQB_qfYZtYWtmhSqWsUfWL_Y,4542
 aiagents4pharma/talk2aiagents4pharma/README.md,sha256=0eGxj7jxi_LrCvX-4I4KrQv-7T2ivo3pqLslG7suaCk,74
 aiagents4pharma/talk2aiagents4pharma/__init__.py,sha256=gjVTAhBHKPEFBbv_2T-MWuDdwHhAKfWIo-lQSrcsLNE,97
-aiagents4pharma/talk2aiagents4pharma/install.md,sha256=5oyy9P8fd03x3f_jOFZTGg2G1AzxMIOrH2vVd8ZS4Iw,4201
+aiagents4pharma/talk2aiagents4pharma/install.md,sha256=cJPJmg66mT9wCALF1eywKgJb2xKK2r9zbGTCZy6i128,4892
 aiagents4pharma/talk2aiagents4pharma/agents/__init__.py,sha256=NpNI6Vr9XIr5m0ZaO32c6NEUTDOZvJUqd8gKzNZhcSw,130
 aiagents4pharma/talk2aiagents4pharma/agents/main_agent.py,sha256=1nRIhj3huv9eVT7v3nhSvx1dDOEEaiApPi7AMRDviXE,2750
 aiagents4pharma/talk2aiagents4pharma/configs/__init__.py,sha256=hwLAR-uhZGEbD5R7mp4kiltSvxuKkG6-_ac17sF-4xU,68
@@ -13,10 +13,10 @@ aiagents4pharma/talk2aiagents4pharma/configs/agents/main_agent/default.yaml,sha2
 aiagents4pharma/talk2aiagents4pharma/configs/app/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 aiagents4pharma/talk2aiagents4pharma/configs/app/frontend/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 aiagents4pharma/talk2aiagents4pharma/configs/app/frontend/default.yaml,sha256=BpDv_Bau0F7xDPzMHVYxedKpZQAPdo0rAsRnfH32-U8,3470
-aiagents4pharma/talk2aiagents4pharma/docker-compose/cpu/.env.example,sha256=twsuiEN-FczXfka40_bVoSQXaMDR_3J3ESKCqU4qSkg,585
-aiagents4pharma/talk2aiagents4pharma/docker-compose/cpu/docker-compose.yml,sha256=2I8jyzaFXSGsBMMFOZ4Hz7hAH3A-ELpoYCphkpT_8rA,2631
-aiagents4pharma/talk2aiagents4pharma/docker-compose/gpu/.env.example,sha256=twsuiEN-FczXfka40_bVoSQXaMDR_3J3ESKCqU4qSkg,585
-aiagents4pharma/talk2aiagents4pharma/docker-compose/gpu/docker-compose.yml,sha256=bZwpaLynxyY6YOj2Sdz3MEVKgBY-FFXTC_K_KmZrMuM,3001
+aiagents4pharma/talk2aiagents4pharma/docker-compose/cpu/.env.example,sha256=K6OKI1lz-TDf8PTpwBfYcg_hORc74TNkbkzg4HxSA1Q,582
+aiagents4pharma/talk2aiagents4pharma/docker-compose/cpu/docker-compose.yml,sha256=_LPT-lKj6mqG9pi-EYCnEylpVllPPHL3uwXZ4NgvDfU,2635
+aiagents4pharma/talk2aiagents4pharma/docker-compose/gpu/.env.example,sha256=K6OKI1lz-TDf8PTpwBfYcg_hORc74TNkbkzg4HxSA1Q,582
+aiagents4pharma/talk2aiagents4pharma/docker-compose/gpu/docker-compose.yml,sha256=g6a1GKgz9PTx7Zv441Rf5FMYM5D3FQ6rQKkq9PNEY4I,3005
 aiagents4pharma/talk2aiagents4pharma/states/__init__.py,sha256=VuVAFmoH8p2erE-mYiaa0uoqTuFynBcXia5Y8lmjI34,109
 aiagents4pharma/talk2aiagents4pharma/states/state_talk2aiagents4pharma.py,sha256=ahquXi8hg6Bk1ttskl9QaYdHq4rDWa_bK7hu81E75M4,468
 aiagents4pharma/talk2aiagents4pharma/tests/__init__.py,sha256=U3PsTiUZaUBD1IZanFGkDIOdFieDVJtGKQ5-woYUo8c,45
@@ -94,12 +94,12 @@ aiagents4pharma/talk2cells/tools/scp_agent/__init__.py,sha256=DAJp26kugSdVHfFyVR
 aiagents4pharma/talk2cells/tools/scp_agent/display_studies.py,sha256=nQltO147j1cFWUJ9mxg3JlWBLsqFivhJ93g1G7gWZko,602
 aiagents4pharma/talk2cells/tools/scp_agent/search_studies.py,sha256=xjsgYJ8Bn8RIzIu_bgn8D_2I8wzLOJeu9evT_vF15mM,2647
 aiagents4pharma/talk2knowledgegraphs/.dockerignore,sha256=-hAM7RzkGbjDeU411-kXOmYzNfl3Z9OlLWvN9zMDAXE,89
-aiagents4pharma/talk2knowledgegraphs/Dockerfile,sha256=qGy6I4oBvQonpDEANQaCW-5JMtHPdd2HKc-JJgoCyYQ,3384
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 aiagents4pharma/talk2knowledgegraphs/README.md,sha256=0eGxj7jxi_LrCvX-4I4KrQv-7T2ivo3pqLslG7suaCk,74
 aiagents4pharma/talk2knowledgegraphs/__init__.py,sha256=ZztaRzRlovSXtVX3i9Rvf84ivIjPn8RMPiYRkbkEJ0E,114
 aiagents4pharma/talk2knowledgegraphs/entrypoint.sh,sha256=EK_jGau1VuW1uTmFWZcKhLMK9VanC5l3q9axF4ZYgmI,5758
-aiagents4pharma/talk2knowledgegraphs/install.md,sha256=1rCv2e6ywb-kZOxtqFJ25qpWHl2MCa9bW6nHYHfxJMI,5555
-aiagents4pharma/talk2knowledgegraphs/milvus_data_dump.py,sha256=D5BB700QshEhY6paByXNLyMjOYyO4Csm4ODgbeeWfmc,35616
+aiagents4pharma/talk2knowledgegraphs/install.md,sha256=n8G8Zm5EI1l6xX0sm44T-eJFk35VxaxoRFYzwyxPS9w,6239
+aiagents4pharma/talk2knowledgegraphs/milvus_data_dump.py,sha256=RyPYjtF49DxL7MIWmVUprw0Wpu4HErHOAOQ2_wLUfVI,36095
 aiagents4pharma/talk2knowledgegraphs/agents/__init__.py,sha256=ugUvVYEdjbZ3y_dogfF5hpQ3lFPFrAvLSydlcpbkGo0,93
 aiagents4pharma/talk2knowledgegraphs/agents/t2kg_agent.py,sha256=GDeSjJNhAqQWagZOxAWUKqDhzUohHViSsu444W9SzRQ,3240
 aiagents4pharma/talk2knowledgegraphs/configs/__init__.py,sha256=H-yhTbJ_RXBLe3XSto5x6FmVrgbi7y1WKEfiwmKzLAk,87
@@ -129,10 +129,10 @@ aiagents4pharma/talk2knowledgegraphs/datasets/biobridge_primekg.py,sha256=M6NtpM
 aiagents4pharma/talk2knowledgegraphs/datasets/dataset.py,sha256=ls0e15uudIbb4zwHMHxjEovmH145RJ_hPeZni89KSnM,411
 aiagents4pharma/talk2knowledgegraphs/datasets/primekg.py,sha256=1WHlQCAyKjpBiX3JnIsSohUZe8Yi5pY-VDP4tCugxkg,7709
 aiagents4pharma/talk2knowledgegraphs/datasets/starkqa_primekg.py,sha256=JtP-jNIFDA3xQbzy5DkK2OHin5NnbWUGa_EJ_1OH6vE,7483
-aiagents4pharma/talk2knowledgegraphs/docker-compose/cpu/.env.example,sha256=twsuiEN-FczXfka40_bVoSQXaMDR_3J3ESKCqU4qSkg,585
-aiagents4pharma/talk2knowledgegraphs/docker-compose/cpu/docker-compose.yml,sha256=7BNUIkwP0cAUH1jznun5-RgsIAZisegLFGiiUZG9F1Y,2631
-aiagents4pharma/talk2knowledgegraphs/docker-compose/gpu/.env.example,sha256=twsuiEN-FczXfka40_bVoSQXaMDR_3J3ESKCqU4qSkg,585
-aiagents4pharma/talk2knowledgegraphs/docker-compose/gpu/docker-compose.yml,sha256=MVWmuxTmTTq3g4MFi9HtvHY0F4MegtprZ7FGIt-60Ms,3001
+aiagents4pharma/talk2knowledgegraphs/docker-compose/cpu/.env.example,sha256=K6OKI1lz-TDf8PTpwBfYcg_hORc74TNkbkzg4HxSA1Q,582
+aiagents4pharma/talk2knowledgegraphs/docker-compose/cpu/docker-compose.yml,sha256=_TjCAeNcugFnR1FptT8vdTIAbYkvQrQ2cGeN-iU7Dbk,2635
+aiagents4pharma/talk2knowledgegraphs/docker-compose/gpu/.env.example,sha256=K6OKI1lz-TDf8PTpwBfYcg_hORc74TNkbkzg4HxSA1Q,582
+aiagents4pharma/talk2knowledgegraphs/docker-compose/gpu/docker-compose.yml,sha256=bLkc20oviAWM5T14_IRy1rvhQFmYkYbhZR5zEbFm3_8,3005
 aiagents4pharma/talk2knowledgegraphs/states/__init__.py,sha256=9X3zHxvtAJFQ0s0VLZ_-iBn4rMVfZWk5CQiWEKJkr0c,109
 aiagents4pharma/talk2knowledgegraphs/states/state_talk2knowledgegraphs.py,sha256=QECNXd8IWDh3WlMvePcd2T6G5XqjOI9EkZdWmICcCT0,1088
 aiagents4pharma/talk2knowledgegraphs/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -330,7 +330,7 @@ aiagents4pharma/talk2scholars/tools/zotero/utils/review_helper.py,sha256=-q-UuzP
 aiagents4pharma/talk2scholars/tools/zotero/utils/write_helper.py,sha256=K1EatPfC-riGyFmkOAS3ReNBaGPY-znne1KqOnFahkI,7339
 aiagents4pharma/talk2scholars/tools/zotero/utils/zotero_path.py,sha256=sKkfJu3u4LKSZjfoQRfeqz26IESHRwBtcSDzLMLlJMo,6311
 aiagents4pharma/talk2scholars/tools/zotero/utils/zotero_pdf_downloader.py,sha256=DBrF5IiF7VRP58hUK8T9LST3lQWLFixLUfnpMSTccoQ,4614
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-aiagents4pharma-1.47.0.dist-info/licenses/LICENSE,sha256=IcIbyB1Hyk5ZDah03VNQvJkbNk2hkBCDqQ8qtnCvB4Q,1077
-aiagents4pharma-1.47.0.dist-info/RECORD,,
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