aiagents4pharma 1.46.1__py3-none-any.whl → 1.46.2__py3-none-any.whl

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Files changed (4) hide show
  1. {aiagents4pharma-1.46.1.dist-info → aiagents4pharma-1.46.2.dist-info}/METADATA +30 -29
  2. {aiagents4pharma-1.46.1.dist-info → aiagents4pharma-1.46.2.dist-info}/RECORD +4 -4
  3. {aiagents4pharma-1.46.1.dist-info → aiagents4pharma-1.46.2.dist-info}/WHEEL +0 -0
  4. {aiagents4pharma-1.46.1.dist-info → aiagents4pharma-1.46.2.dist-info}/licenses/LICENSE +0 -0
{aiagents4pharma-1.46.1.dist-info → aiagents4pharma-1.46.2.dist-info}/METADATA RENAMED
@@ -1,89 +1,89 @@
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  Metadata-Version: 2.4
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  Name: aiagents4pharma
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- Version: 1.46.1
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+ Version: 1.46.2
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  Summary: AI Agents for drug discovery, drug development, and other pharmaceutical R&D.
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  License-File: LICENSE
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  Classifier: License :: OSI Approved :: MIT License
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  Classifier: Operating System :: OS Independent
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  Classifier: Programming Language :: Python :: 3
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  Requires-Python: >=3.12
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- Requires-Dist: anndata==0.11.3
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+ Requires-Dist: anndata==0.12.2
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  Requires-Dist: azure-identity==1.24.0
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- Requires-Dist: beautifulsoup4==4.13.4
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+ Requires-Dist: beautifulsoup4==4.13.5
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  Requires-Dist: cell2sentence==1.1.0
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  Requires-Dist: cloudscraper==1.2.71
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  Requires-Dist: copasi-basico==0.84
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- Requires-Dist: coverage==7.6.4
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+ Requires-Dist: coverage==7.10.6
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  Requires-Dist: datasets==4.0.0
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- Requires-Dist: einops==0.8.0
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+ Requires-Dist: einops==0.8.1
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  Requires-Dist: gdown==5.2.0
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  Requires-Dist: gravis==0.1.0
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- Requires-Dist: gseapy==1.1.8
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- Requires-Dist: h5py==3.13.0
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+ Requires-Dist: gseapy==1.1.9
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+ Requires-Dist: h5py==3.14.0
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  Requires-Dist: huggingface-hub==0.34.4
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  Requires-Dist: hydra-core==1.3.2
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- Requires-Dist: igraph==0.11.8
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- Requires-Dist: ipykernel==6.29.5
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+ Requires-Dist: igraph==0.11.9
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+ Requires-Dist: ipykernel==6.30.1
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  Requires-Dist: ipython==8.32.0
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- Requires-Dist: joblib==1.4.2
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+ Requires-Dist: joblib==1.5.2
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  Requires-Dist: langchain-community==0.3.5
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  Requires-Dist: langchain-core==0.3.40
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- Requires-Dist: langchain-experimental==0.3.3
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- Requires-Dist: langchain-milvus==0.2.0
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+ Requires-Dist: langchain-experimental==0.3.4
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+ Requires-Dist: langchain-milvus==0.2.1
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  Requires-Dist: langchain-nvidia-ai-endpoints==0.3.9
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  Requires-Dist: langchain-ollama==0.2.3
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  Requires-Dist: langchain-openai==0.3.0
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  Requires-Dist: langchain==0.3.7
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  Requires-Dist: langgraph-supervisor==0.0.9
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  Requires-Dist: langgraph==0.3.34
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- Requires-Dist: matplotlib==3.9.2
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- Requires-Dist: mkdocs-include-markdown-plugin==7.1.2
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+ Requires-Dist: matplotlib==3.10.6
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+ Requires-Dist: mkdocs-include-markdown-plugin==7.1.7
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  Requires-Dist: mkdocs-jupyter==0.25.1
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- Requires-Dist: mkdocs-material==9.5.47
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+ Requires-Dist: mkdocs-material==9.6.18
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  Requires-Dist: mkdocs==1.6.1
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- Requires-Dist: mkdocstrings-python==1.12.2
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- Requires-Dist: mkdocstrings==0.27.0
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+ Requires-Dist: mkdocstrings-python==1.18.2
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+ Requires-Dist: mkdocstrings==0.30.0
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  Requires-Dist: nbformat==5.10.4
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  Requires-Dist: numpy==1.26.4
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  Requires-Dist: ollama==0.4.7
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  Requires-Dist: openai==1.59.6
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  Requires-Dist: openpyxl==3.1.5
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- Requires-Dist: pandas==2.2.3
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+ Requires-Dist: pandas==2.3.2
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  Requires-Dist: pcst-fast==1.0.10
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  Requires-Dist: plotly-express==0.4.1
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  Requires-Dist: plotly==5.24.1
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  Requires-Dist: pubchempy==1.0.4
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  Requires-Dist: pyarrow==21.0.0
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- Requires-Dist: pydantic==2.10.5
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+ Requires-Dist: pydantic==2.11.7
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  Requires-Dist: pygeneconverter==0.3
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- Requires-Dist: pylint==3.3.1
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- Requires-Dist: pymilvus==2.5.11
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+ Requires-Dist: pylint==3.3.8
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+ Requires-Dist: pymilvus==2.6.1
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  Requires-Dist: pypdf==6.0.0
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  Requires-Dist: pytest-asyncio==0.25.2
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- Requires-Dist: pytest==8.3.3
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+ Requires-Dist: pytest==8.4.1
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  Requires-Dist: python-magic==0.4.27
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- Requires-Dist: pyzotero==1.6.9
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- Requires-Dist: requests==2.32.4
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- Requires-Dist: scanpy==1.11.0
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- Requires-Dist: scipy==1.15.2
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+ Requires-Dist: pyzotero==1.6.11
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+ Requires-Dist: requests==2.32.5
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+ Requires-Dist: scanpy==1.11.4
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+ Requires-Dist: scipy==1.16.1
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  Requires-Dist: seaborn==0.13.2
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  Requires-Dist: sentence-transformers==3.3.1
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  Requires-Dist: setuptools==80.9.0
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  Requires-Dist: streamlit-feedback==0.1.4
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- Requires-Dist: streamlit==1.41.1
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+ Requires-Dist: streamlit==1.49.1
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  Requires-Dist: tabulate==0.9.0
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  Requires-Dist: torch-geometric==2.6.1
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  Requires-Dist: torch==2.8.0
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  Requires-Dist: tqdm==4.67.1
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  Requires-Dist: transformers==4.55.2
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- Requires-Dist: umap-learn==0.5.7
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+ Requires-Dist: umap-learn==0.5.9.post2
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  Requires-Dist: xlsxwriter==3.2.5
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  Provides-Extra: dev
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  Requires-Dist: bandit==1.8.6; extra == 'dev'
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  Requires-Dist: mypy==1.17.1; extra == 'dev'
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  Requires-Dist: pip-audit==2.9.0; extra == 'dev'
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  Requires-Dist: pre-commit==4.3.0; extra == 'dev'
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- Requires-Dist: ruff==0.12.8; extra == 'dev'
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+ Requires-Dist: ruff==0.12.11; extra == 'dev'
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  Requires-Dist: safety==3.2.9; extra == 'dev'
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  Requires-Dist: twine==6.1.0; extra == 'dev'
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  Description-Content-Type: text/markdown
@@ -275,6 +275,7 @@ For contributors and developers, we have comprehensive documentation:
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  - **[SonarCloud Integration](docs/developer/SONARCLOUD_SETUP.md)** - Code quality analysis and CI/CD integration
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  - **[GitHub Workflows](docs/developer/WORKFLOWS.md)** - Understanding our CI/CD pipeline
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  - **[Streamlit Security](docs/developer/STREAMLIT_SECURITY.md)** - File upload security implementation
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+ - **[Azure Deployment](developer/AZURE_DEPLOYMENT.md)** - Understanding our Azure deployment setup
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  #### How to contribute
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{aiagents4pharma-1.46.1.dist-info → aiagents4pharma-1.46.2.dist-info}/RECORD RENAMED
@@ -328,7 +328,7 @@ aiagents4pharma/talk2scholars/tools/zotero/utils/review_helper.py,sha256=-q-UuzP
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  aiagents4pharma/talk2scholars/tools/zotero/utils/write_helper.py,sha256=K1EatPfC-riGyFmkOAS3ReNBaGPY-znne1KqOnFahkI,7339
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  aiagents4pharma/talk2scholars/tools/zotero/utils/zotero_path.py,sha256=sKkfJu3u4LKSZjfoQRfeqz26IESHRwBtcSDzLMLlJMo,6311
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  aiagents4pharma/talk2scholars/tools/zotero/utils/zotero_pdf_downloader.py,sha256=DBrF5IiF7VRP58hUK8T9LST3lQWLFixLUfnpMSTccoQ,4614
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- aiagents4pharma-1.46.1.dist-info/METADATA,sha256=z8dEOeNUk6HxhM5WQfaFKsnkdrUo-OAbJwf3G8-4Yro,16928
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- aiagents4pharma-1.46.1.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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- aiagents4pharma-1.46.1.dist-info/licenses/LICENSE,sha256=IcIbyB1Hyk5ZDah03VNQvJkbNk2hkBCDqQ8qtnCvB4Q,1077
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- aiagents4pharma-1.46.1.dist-info/RECORD,,
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+ aiagents4pharma-1.46.2.dist-info/METADATA,sha256=EnSy3phI9yOyB4Rlkagi5T2jneuEGBITExl3Zt9MHCQ,17036
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+ aiagents4pharma-1.46.2.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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+ aiagents4pharma-1.46.2.dist-info/licenses/LICENSE,sha256=IcIbyB1Hyk5ZDah03VNQvJkbNk2hkBCDqQ8qtnCvB4Q,1077
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+ aiagents4pharma-1.46.2.dist-info/RECORD,,