aiagents4pharma 1.43.0__py3-none-any.whl → 1.44.0__py3-none-any.whl

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Files changed (10) hide show
  1. aiagents4pharma/talk2knowledgegraphs/configs/tools/multimodal_subgraph_extraction/default.yaml +17 -2
  2. aiagents4pharma/talk2knowledgegraphs/tests/test_tools_milvus_multimodal_subgraph_extraction.py +618 -413
  3. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_extractions_milvus_multimodal_pcst.py +362 -25
  4. aiagents4pharma/talk2knowledgegraphs/tools/milvus_multimodal_subgraph_extraction.py +146 -109
  5. aiagents4pharma/talk2knowledgegraphs/utils/extractions/milvus_multimodal_pcst.py +240 -83
  6. {aiagents4pharma-1.43.0.dist-info → aiagents4pharma-1.44.0.dist-info}/METADATA +1 -1
  7. {aiagents4pharma-1.43.0.dist-info → aiagents4pharma-1.44.0.dist-info}/RECORD +10 -10
  8. {aiagents4pharma-1.43.0.dist-info → aiagents4pharma-1.44.0.dist-info}/WHEEL +0 -0
  9. {aiagents4pharma-1.43.0.dist-info → aiagents4pharma-1.44.0.dist-info}/licenses/LICENSE +0 -0
  10. {aiagents4pharma-1.43.0.dist-info → aiagents4pharma-1.44.0.dist-info}/top_level.txt +0 -0
aiagents4pharma/talk2knowledgegraphs/configs/tools/multimodal_subgraph_extraction/default.yaml CHANGED
@@ -3,6 +3,8 @@ ollama_embeddings:
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  - "nomic-embed-text"
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  temperature: 0.1
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  streaming: False
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+
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+ # PCST Algorithm Parameters
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  topk: 15
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  topk_e: 15
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  cost_e: 0.5
@@ -11,7 +13,20 @@ root: -1
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  num_clusters: 1
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  pruning: "gw"
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  verbosity_level: 0
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- search_metric_type: "IP" # Inner Product
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+
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+ # Hardware-Specific Vector Processing
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+ vector_processing:
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+ # Enable dynamic metric type selection based on hardware
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+ dynamic_metrics: true
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+
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+ # Milvus Database Configuration
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+ milvus_db:
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+ # Database and collection names
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+ database_name: "t2kg_primekg"
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+
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+ # Cache settings for edge index
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+ cache_edge_index_path: "${oc.env:CACHE_EDGE_INDEX_PATH,aiagents4pharma/talk2knowledgegraphs/tests/files/t2kg_primekg_edge_index.pkl}"
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+
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  node_id_column: "node_id"
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  node_attr_column: "node_attr"
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  edge_src_column: "edge_src"
@@ -34,4 +49,4 @@ biobridge:
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  - "cellular_component"
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  - "biological_process"
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  - "drug"
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- - "disease"
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+ - "disease"