aiagents4pharma 1.2.1__py3-none-any.whl → 1.3.0__py3-none-any.whl

aiagents4pharma/talk2biomodels/tools/ask_question.py

@@ -100,28 +100,6 @@ class AskQuestionTool(BaseTool):
         llm_result = df_agent.invoke(question)
         return llm_result["output"]
 
-    def call_run(self,
-            question: str,
-            sys_bio_model: ModelData = ModelData(),
-            st_session_key: str = None,
-            run_manager: Optional[CallbackManagerForToolRun] = None) -> str:
-        """
-        Run the tool.
-
-        Args:
-            question (str): The question to ask about the simulation results.
-            sys_bio_model (ModelData): The model data.
-            st_session_key (str): The Streamlit session key.
-            run_manager (Optional[CallbackManagerForToolRun]): The CallbackManagerForToolRun object.
-
-        Returns:
-            str: The answer to the question.
-        """
-        return self._run(question=question,
-                         sys_bio_model=sys_bio_model,
-                         st_session_key=st_session_key,
-                         run_manager=run_manager)
-
     def get_metadata(self):
         """
         Get metadata for the tool.

aiagents4pharma/talk2biomodels/tools/model_description.py

@@ -123,28 +123,6 @@ class ModelDescriptionTool(BaseTool):
         return chain.invoke({"description": description,
                              "question": question})
 
-    def call_run(self,
-            question: str,
-            sys_bio_model: ModelData = ModelData(),
-            st_session_key: str = None,
-            run_manager: Optional[CallbackManagerForToolRun] = None) -> str:
-        """
-        Run the tool.
-
-        Args:
-            question (str): The question to ask about the model description.
-            sys_bio_model (ModelData): The model data.
-            st_session_key (str): The Streamlit session key.
-            run_manager (Optional[CallbackManagerForToolRun]): The CallbackManagerForToolRun object.
-        
-        Returns:
-            str: The answer to the question
-        """
-        return self._run(question=question,
-                         sys_bio_model=sys_bio_model,
-                         st_session_key=st_session_key,
-                         run_manager=run_manager)
-
     def get_metadata(self):
         """
         Get metadata for the tool.

{aiagents4pharma-1.2.1.dist-info → aiagents4pharma-1.3.0.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: aiagents4pharma
-Version: 1.2.1
+Version: 1.3.0
 Summary: AI Agents for drug discovery, drug development, and other pharmaceutical R&D
 Classifier: Programming Language :: Python :: 3
 Classifier: License :: OSI Approved :: MIT License
@@ -25,6 +25,12 @@ Requires-Dist: pytest==8.3.3
 Requires-Dist: streamlit==1.39.0
 Requires-Dist: tabulate==0.9.0
 Requires-Dist: tqdm==4.66.6
+Requires-Dist: mkdocs==1.6.1
+Requires-Dist: mkdocs-jupyter==0.25.1
+Requires-Dist: mkdocs-material==9.5.47
+Requires-Dist: mkdocstrings-python==1.12.2
+Requires-Dist: mkdocs-include-markdown-plugin==7.1.2
+Requires-Dist: mkdocstrings==0.27.0
 
 [![TESTS](https://github.com/VirtualPatientEngine/AIAgents4Pharma/actions/workflows/tests.yml/badge.svg?branch=feat%2Finitial-setup)](https://github.com/VirtualPatientEngine/AIAgents4Pharma/actions/workflows/tests.yml)
 

{aiagents4pharma-1.2.1.dist-info → aiagents4pharma-1.3.0.dist-info}/RECORD

@@ -4,15 +4,15 @@ aiagents4pharma/talk2biomodels/models/__init__.py,sha256=5fTHHm3PVloYPNKXbgNlcPg
 aiagents4pharma/talk2biomodels/models/basico_model.py,sha256=SC9rFzLWzNxcQueAduL3dBmDh-lTtP1agH-TXjucOkw,4199
 aiagents4pharma/talk2biomodels/models/sys_bio_model.py,sha256=xN-ZXCpIxNkEXuDIvi_AW6LpCyPqXReGyhLPyJIXNqs,1980
 aiagents4pharma/talk2biomodels/tools/__init__.py,sha256=AM03pbYT3nOzI5jf_CJmSDaDwrI-IZ0Zq9hLA2tOXpw,182
-aiagents4pharma/talk2biomodels/tools/ask_question.py,sha256=7mH5zZFC_syMuDga0ZI6eOyjdPKQNv1hpgJ2EGqTRU8,5377
+aiagents4pharma/talk2biomodels/tools/ask_question.py,sha256=o9ae4s3wsDFr_pGBU1cSxKhJ7E2yjybIzG1Y4z6957Y,4534
 aiagents4pharma/talk2biomodels/tools/custom_plotter.py,sha256=CdgJjlHAkdyjnwPD6nHARsJXnx_CE0MWg5VOz4oBjY0,2910
 aiagents4pharma/talk2biomodels/tools/fetch_parameters.py,sha256=levr42F-m53Oya8VTbLlvLJt1snNgnIlSHs4JDiNAv8,2063
-aiagents4pharma/talk2biomodels/tools/model_description.py,sha256=7qsZ8Lq23eTtFJFMfufawZKgDLTvyihKQJB_18N5Ta4,6232
+aiagents4pharma/talk2biomodels/tools/model_description.py,sha256=MwG3XLw-lrR8iReH6VQ94yuU4VGn-I9pxv8anFxIMVc,5383
 aiagents4pharma/talk2biomodels/tools/plot_figure.py,sha256=S_d8nNy7NVSBIqnDhg6ex_AdaMqUmVX8D1qOjRGe3r8,5594
 aiagents4pharma/talk2biomodels/tools/search_models.py,sha256=5qmgQcwlICYAFG11y-aEhBSeYYT6Lu6AKGL2V-p1ggQ,2685
 aiagents4pharma/talk2biomodels/tools/simulate_model.py,sha256=n6TbfJRgeo2X_1wXPHGeeCvZoso8LFjLqqfKhfseFVM,7287
-aiagents4pharma-1.2.1.dist-info/LICENSE,sha256=IcIbyB1Hyk5ZDah03VNQvJkbNk2hkBCDqQ8qtnCvB4Q,1077
-aiagents4pharma-1.2.1.dist-info/METADATA,sha256=fZ61njtDd6PHjFtfWkUnQA4xTtJivNpTkYb1tBF8Yz0,5460
-aiagents4pharma-1.2.1.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
-aiagents4pharma-1.2.1.dist-info/top_level.txt,sha256=-AH8rMmrSnJtq7HaAObS78UU-cTCwvX660dSxeM7a0A,16
-aiagents4pharma-1.2.1.dist-info/RECORD,,
+aiagents4pharma-1.3.0.dist-info/LICENSE,sha256=IcIbyB1Hyk5ZDah03VNQvJkbNk2hkBCDqQ8qtnCvB4Q,1077
+aiagents4pharma-1.3.0.dist-info/METADATA,sha256=PzERn1_0BrkZlrloEk_rTtF4ntaBwxmptFfjyXu5vso,5698
+aiagents4pharma-1.3.0.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
+aiagents4pharma-1.3.0.dist-info/top_level.txt,sha256=-AH8rMmrSnJtq7HaAObS78UU-cTCwvX660dSxeM7a0A,16
+aiagents4pharma-1.3.0.dist-info/RECORD,,