aiagents4pharma 0.0.0__py3-none-any.whl

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  1. aiagents4pharma/__init__.py +11 -0
  2. aiagents4pharma/talk2aiagents4pharma/.dockerignore +13 -0
  3. aiagents4pharma/talk2aiagents4pharma/Dockerfile +133 -0
  4. aiagents4pharma/talk2aiagents4pharma/README.md +1 -0
  5. aiagents4pharma/talk2aiagents4pharma/__init__.py +5 -0
  6. aiagents4pharma/talk2aiagents4pharma/agents/__init__.py +6 -0
  7. aiagents4pharma/talk2aiagents4pharma/agents/main_agent.py +70 -0
  8. aiagents4pharma/talk2aiagents4pharma/configs/__init__.py +5 -0
  9. aiagents4pharma/talk2aiagents4pharma/configs/agents/__init__.py +5 -0
  10. aiagents4pharma/talk2aiagents4pharma/configs/agents/main_agent/default.yaml +29 -0
  11. aiagents4pharma/talk2aiagents4pharma/configs/app/__init__.py +0 -0
  12. aiagents4pharma/talk2aiagents4pharma/configs/app/frontend/__init__.py +0 -0
  13. aiagents4pharma/talk2aiagents4pharma/configs/app/frontend/default.yaml +102 -0
  14. aiagents4pharma/talk2aiagents4pharma/configs/config.yaml +4 -0
  15. aiagents4pharma/talk2aiagents4pharma/docker-compose/cpu/.env.example +23 -0
  16. aiagents4pharma/talk2aiagents4pharma/docker-compose/cpu/docker-compose.yml +93 -0
  17. aiagents4pharma/talk2aiagents4pharma/docker-compose/gpu/.env.example +23 -0
  18. aiagents4pharma/talk2aiagents4pharma/docker-compose/gpu/docker-compose.yml +108 -0
  19. aiagents4pharma/talk2aiagents4pharma/install.md +154 -0
  20. aiagents4pharma/talk2aiagents4pharma/states/__init__.py +5 -0
  21. aiagents4pharma/talk2aiagents4pharma/states/state_talk2aiagents4pharma.py +18 -0
  22. aiagents4pharma/talk2aiagents4pharma/tests/__init__.py +3 -0
  23. aiagents4pharma/talk2aiagents4pharma/tests/test_main_agent.py +312 -0
  24. aiagents4pharma/talk2biomodels/.dockerignore +13 -0
  25. aiagents4pharma/talk2biomodels/Dockerfile +104 -0
  26. aiagents4pharma/talk2biomodels/README.md +1 -0
  27. aiagents4pharma/talk2biomodels/__init__.py +5 -0
  28. aiagents4pharma/talk2biomodels/agents/__init__.py +6 -0
  29. aiagents4pharma/talk2biomodels/agents/t2b_agent.py +104 -0
  30. aiagents4pharma/talk2biomodels/api/__init__.py +5 -0
  31. aiagents4pharma/talk2biomodels/api/ols.py +75 -0
  32. aiagents4pharma/talk2biomodels/api/uniprot.py +36 -0
  33. aiagents4pharma/talk2biomodels/configs/__init__.py +5 -0
  34. aiagents4pharma/talk2biomodels/configs/agents/__init__.py +5 -0
  35. aiagents4pharma/talk2biomodels/configs/agents/t2b_agent/__init__.py +3 -0
  36. aiagents4pharma/talk2biomodels/configs/agents/t2b_agent/default.yaml +14 -0
  37. aiagents4pharma/talk2biomodels/configs/app/__init__.py +0 -0
  38. aiagents4pharma/talk2biomodels/configs/app/frontend/__init__.py +0 -0
  39. aiagents4pharma/talk2biomodels/configs/app/frontend/default.yaml +72 -0
  40. aiagents4pharma/talk2biomodels/configs/config.yaml +7 -0
  41. aiagents4pharma/talk2biomodels/configs/tools/__init__.py +5 -0
  42. aiagents4pharma/talk2biomodels/configs/tools/ask_question/__init__.py +3 -0
  43. aiagents4pharma/talk2biomodels/configs/tools/ask_question/default.yaml +30 -0
  44. aiagents4pharma/talk2biomodels/configs/tools/custom_plotter/__init__.py +3 -0
  45. aiagents4pharma/talk2biomodels/configs/tools/custom_plotter/default.yaml +8 -0
  46. aiagents4pharma/talk2biomodels/configs/tools/get_annotation/__init__.py +3 -0
  47. aiagents4pharma/talk2biomodels/configs/tools/get_annotation/default.yaml +8 -0
  48. aiagents4pharma/talk2biomodels/install.md +63 -0
  49. aiagents4pharma/talk2biomodels/models/__init__.py +5 -0
  50. aiagents4pharma/talk2biomodels/models/basico_model.py +125 -0
  51. aiagents4pharma/talk2biomodels/models/sys_bio_model.py +60 -0
  52. aiagents4pharma/talk2biomodels/states/__init__.py +6 -0
  53. aiagents4pharma/talk2biomodels/states/state_talk2biomodels.py +49 -0
  54. aiagents4pharma/talk2biomodels/tests/BIOMD0000000449_url.xml +1585 -0
  55. aiagents4pharma/talk2biomodels/tests/__init__.py +3 -0
  56. aiagents4pharma/talk2biomodels/tests/article_on_model_537.pdf +0 -0
  57. aiagents4pharma/talk2biomodels/tests/test_api.py +31 -0
  58. aiagents4pharma/talk2biomodels/tests/test_ask_question.py +42 -0
  59. aiagents4pharma/talk2biomodels/tests/test_basico_model.py +67 -0
  60. aiagents4pharma/talk2biomodels/tests/test_get_annotation.py +190 -0
  61. aiagents4pharma/talk2biomodels/tests/test_getmodelinfo.py +92 -0
  62. aiagents4pharma/talk2biomodels/tests/test_integration.py +116 -0
  63. aiagents4pharma/talk2biomodels/tests/test_load_biomodel.py +35 -0
  64. aiagents4pharma/talk2biomodels/tests/test_param_scan.py +71 -0
  65. aiagents4pharma/talk2biomodels/tests/test_query_article.py +184 -0
  66. aiagents4pharma/talk2biomodels/tests/test_save_model.py +47 -0
  67. aiagents4pharma/talk2biomodels/tests/test_search_models.py +35 -0
  68. aiagents4pharma/talk2biomodels/tests/test_simulate_model.py +44 -0
  69. aiagents4pharma/talk2biomodels/tests/test_steady_state.py +86 -0
  70. aiagents4pharma/talk2biomodels/tests/test_sys_bio_model.py +67 -0
  71. aiagents4pharma/talk2biomodels/tools/__init__.py +17 -0
  72. aiagents4pharma/talk2biomodels/tools/ask_question.py +125 -0
  73. aiagents4pharma/talk2biomodels/tools/custom_plotter.py +165 -0
  74. aiagents4pharma/talk2biomodels/tools/get_annotation.py +342 -0
  75. aiagents4pharma/talk2biomodels/tools/get_modelinfo.py +159 -0
  76. aiagents4pharma/talk2biomodels/tools/load_arguments.py +134 -0
  77. aiagents4pharma/talk2biomodels/tools/load_biomodel.py +44 -0
  78. aiagents4pharma/talk2biomodels/tools/parameter_scan.py +310 -0
  79. aiagents4pharma/talk2biomodels/tools/query_article.py +64 -0
  80. aiagents4pharma/talk2biomodels/tools/save_model.py +98 -0
  81. aiagents4pharma/talk2biomodels/tools/search_models.py +96 -0
  82. aiagents4pharma/talk2biomodels/tools/simulate_model.py +137 -0
  83. aiagents4pharma/talk2biomodels/tools/steady_state.py +187 -0
  84. aiagents4pharma/talk2biomodels/tools/utils.py +23 -0
  85. aiagents4pharma/talk2cells/README.md +1 -0
  86. aiagents4pharma/talk2cells/__init__.py +5 -0
  87. aiagents4pharma/talk2cells/agents/__init__.py +6 -0
  88. aiagents4pharma/talk2cells/agents/scp_agent.py +87 -0
  89. aiagents4pharma/talk2cells/states/__init__.py +6 -0
  90. aiagents4pharma/talk2cells/states/state_talk2cells.py +15 -0
  91. aiagents4pharma/talk2cells/tests/scp_agent/test_scp_agent.py +22 -0
  92. aiagents4pharma/talk2cells/tools/__init__.py +6 -0
  93. aiagents4pharma/talk2cells/tools/scp_agent/__init__.py +6 -0
  94. aiagents4pharma/talk2cells/tools/scp_agent/display_studies.py +27 -0
  95. aiagents4pharma/talk2cells/tools/scp_agent/search_studies.py +78 -0
  96. aiagents4pharma/talk2knowledgegraphs/.dockerignore +13 -0
  97. aiagents4pharma/talk2knowledgegraphs/Dockerfile +131 -0
  98. aiagents4pharma/talk2knowledgegraphs/README.md +1 -0
  99. aiagents4pharma/talk2knowledgegraphs/__init__.py +5 -0
  100. aiagents4pharma/talk2knowledgegraphs/agents/__init__.py +5 -0
  101. aiagents4pharma/talk2knowledgegraphs/agents/t2kg_agent.py +99 -0
  102. aiagents4pharma/talk2knowledgegraphs/configs/__init__.py +5 -0
  103. aiagents4pharma/talk2knowledgegraphs/configs/agents/t2kg_agent/__init__.py +3 -0
  104. aiagents4pharma/talk2knowledgegraphs/configs/agents/t2kg_agent/default.yaml +62 -0
  105. aiagents4pharma/talk2knowledgegraphs/configs/app/__init__.py +5 -0
  106. aiagents4pharma/talk2knowledgegraphs/configs/app/frontend/__init__.py +3 -0
  107. aiagents4pharma/talk2knowledgegraphs/configs/app/frontend/default.yaml +79 -0
  108. aiagents4pharma/talk2knowledgegraphs/configs/config.yaml +13 -0
  109. aiagents4pharma/talk2knowledgegraphs/configs/tools/__init__.py +5 -0
  110. aiagents4pharma/talk2knowledgegraphs/configs/tools/graphrag_reasoning/__init__.py +3 -0
  111. aiagents4pharma/talk2knowledgegraphs/configs/tools/graphrag_reasoning/default.yaml +24 -0
  112. aiagents4pharma/talk2knowledgegraphs/configs/tools/multimodal_subgraph_extraction/__init__.py +0 -0
  113. aiagents4pharma/talk2knowledgegraphs/configs/tools/multimodal_subgraph_extraction/default.yaml +33 -0
  114. aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_extraction/__init__.py +3 -0
  115. aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_extraction/default.yaml +43 -0
  116. aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_summarization/__init__.py +3 -0
  117. aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_summarization/default.yaml +9 -0
  118. aiagents4pharma/talk2knowledgegraphs/configs/utils/database/milvus/__init__.py +3 -0
  119. aiagents4pharma/talk2knowledgegraphs/configs/utils/database/milvus/default.yaml +61 -0
  120. aiagents4pharma/talk2knowledgegraphs/configs/utils/enrichments/ols_terms/default.yaml +3 -0
  121. aiagents4pharma/talk2knowledgegraphs/configs/utils/enrichments/reactome_pathways/default.yaml +3 -0
  122. aiagents4pharma/talk2knowledgegraphs/configs/utils/enrichments/uniprot_proteins/default.yaml +6 -0
  123. aiagents4pharma/talk2knowledgegraphs/configs/utils/pubchem_utils/default.yaml +5 -0
  124. aiagents4pharma/talk2knowledgegraphs/datasets/__init__.py +5 -0
  125. aiagents4pharma/talk2knowledgegraphs/datasets/biobridge_primekg.py +607 -0
  126. aiagents4pharma/talk2knowledgegraphs/datasets/dataset.py +25 -0
  127. aiagents4pharma/talk2knowledgegraphs/datasets/primekg.py +212 -0
  128. aiagents4pharma/talk2knowledgegraphs/datasets/starkqa_primekg.py +210 -0
  129. aiagents4pharma/talk2knowledgegraphs/docker-compose/cpu/.env.example +23 -0
  130. aiagents4pharma/talk2knowledgegraphs/docker-compose/cpu/docker-compose.yml +93 -0
  131. aiagents4pharma/talk2knowledgegraphs/docker-compose/gpu/.env.example +23 -0
  132. aiagents4pharma/talk2knowledgegraphs/docker-compose/gpu/docker-compose.yml +108 -0
  133. aiagents4pharma/talk2knowledgegraphs/entrypoint.sh +180 -0
  134. aiagents4pharma/talk2knowledgegraphs/install.md +165 -0
  135. aiagents4pharma/talk2knowledgegraphs/milvus_data_dump.py +886 -0
  136. aiagents4pharma/talk2knowledgegraphs/states/__init__.py +5 -0
  137. aiagents4pharma/talk2knowledgegraphs/states/state_talk2knowledgegraphs.py +40 -0
  138. aiagents4pharma/talk2knowledgegraphs/tests/__init__.py +0 -0
  139. aiagents4pharma/talk2knowledgegraphs/tests/test_agents_t2kg_agent.py +318 -0
  140. aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_biobridge_primekg.py +248 -0
  141. aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_dataset.py +33 -0
  142. aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_primekg.py +86 -0
  143. aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_starkqa_primekg.py +125 -0
  144. aiagents4pharma/talk2knowledgegraphs/tests/test_tools_graphrag_reasoning.py +257 -0
  145. aiagents4pharma/talk2knowledgegraphs/tests/test_tools_milvus_multimodal_subgraph_extraction.py +1444 -0
  146. aiagents4pharma/talk2knowledgegraphs/tests/test_tools_multimodal_subgraph_extraction.py +159 -0
  147. aiagents4pharma/talk2knowledgegraphs/tests/test_tools_subgraph_extraction.py +152 -0
  148. aiagents4pharma/talk2knowledgegraphs/tests/test_tools_subgraph_summarization.py +201 -0
  149. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_database_milvus_connection_manager.py +812 -0
  150. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_embeddings.py +51 -0
  151. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_huggingface.py +49 -0
  152. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_nim_molmim.py +59 -0
  153. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_ollama.py +63 -0
  154. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_sentencetransformer.py +47 -0
  155. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_enrichments.py +40 -0
  156. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_ollama.py +94 -0
  157. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_ols.py +70 -0
  158. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_pubchem.py +45 -0
  159. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_reactome.py +44 -0
  160. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_uniprot.py +48 -0
  161. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_extractions_milvus_multimodal_pcst.py +759 -0
  162. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_kg_utils.py +78 -0
  163. aiagents4pharma/talk2knowledgegraphs/tests/test_utils_pubchem_utils.py +123 -0
  164. aiagents4pharma/talk2knowledgegraphs/tools/__init__.py +11 -0
  165. aiagents4pharma/talk2knowledgegraphs/tools/graphrag_reasoning.py +138 -0
  166. aiagents4pharma/talk2knowledgegraphs/tools/load_arguments.py +22 -0
  167. aiagents4pharma/talk2knowledgegraphs/tools/milvus_multimodal_subgraph_extraction.py +965 -0
  168. aiagents4pharma/talk2knowledgegraphs/tools/multimodal_subgraph_extraction.py +374 -0
  169. aiagents4pharma/talk2knowledgegraphs/tools/subgraph_extraction.py +291 -0
  170. aiagents4pharma/talk2knowledgegraphs/tools/subgraph_summarization.py +123 -0
  171. aiagents4pharma/talk2knowledgegraphs/utils/__init__.py +5 -0
  172. aiagents4pharma/talk2knowledgegraphs/utils/database/__init__.py +5 -0
  173. aiagents4pharma/talk2knowledgegraphs/utils/database/milvus_connection_manager.py +586 -0
  174. aiagents4pharma/talk2knowledgegraphs/utils/embeddings/__init__.py +5 -0
  175. aiagents4pharma/talk2knowledgegraphs/utils/embeddings/embeddings.py +81 -0
  176. aiagents4pharma/talk2knowledgegraphs/utils/embeddings/huggingface.py +111 -0
  177. aiagents4pharma/talk2knowledgegraphs/utils/embeddings/nim_molmim.py +54 -0
  178. aiagents4pharma/talk2knowledgegraphs/utils/embeddings/ollama.py +87 -0
  179. aiagents4pharma/talk2knowledgegraphs/utils/embeddings/sentence_transformer.py +73 -0
  180. aiagents4pharma/talk2knowledgegraphs/utils/enrichments/__init__.py +12 -0
  181. aiagents4pharma/talk2knowledgegraphs/utils/enrichments/enrichments.py +37 -0
  182. aiagents4pharma/talk2knowledgegraphs/utils/enrichments/ollama.py +129 -0
  183. aiagents4pharma/talk2knowledgegraphs/utils/enrichments/ols_terms.py +89 -0
  184. aiagents4pharma/talk2knowledgegraphs/utils/enrichments/pubchem_strings.py +78 -0
  185. aiagents4pharma/talk2knowledgegraphs/utils/enrichments/reactome_pathways.py +71 -0
  186. aiagents4pharma/talk2knowledgegraphs/utils/enrichments/uniprot_proteins.py +98 -0
  187. aiagents4pharma/talk2knowledgegraphs/utils/extractions/__init__.py +5 -0
  188. aiagents4pharma/talk2knowledgegraphs/utils/extractions/milvus_multimodal_pcst.py +762 -0
  189. aiagents4pharma/talk2knowledgegraphs/utils/extractions/multimodal_pcst.py +298 -0
  190. aiagents4pharma/talk2knowledgegraphs/utils/extractions/pcst.py +229 -0
  191. aiagents4pharma/talk2knowledgegraphs/utils/kg_utils.py +67 -0
  192. aiagents4pharma/talk2knowledgegraphs/utils/pubchem_utils.py +104 -0
  193. aiagents4pharma/talk2scholars/.dockerignore +13 -0
  194. aiagents4pharma/talk2scholars/Dockerfile +104 -0
  195. aiagents4pharma/talk2scholars/README.md +1 -0
  196. aiagents4pharma/talk2scholars/__init__.py +7 -0
  197. aiagents4pharma/talk2scholars/agents/__init__.py +13 -0
  198. aiagents4pharma/talk2scholars/agents/main_agent.py +89 -0
  199. aiagents4pharma/talk2scholars/agents/paper_download_agent.py +96 -0
  200. aiagents4pharma/talk2scholars/agents/pdf_agent.py +101 -0
  201. aiagents4pharma/talk2scholars/agents/s2_agent.py +135 -0
  202. aiagents4pharma/talk2scholars/agents/zotero_agent.py +127 -0
  203. aiagents4pharma/talk2scholars/configs/__init__.py +7 -0
  204. aiagents4pharma/talk2scholars/configs/agents/__init__.py +7 -0
  205. aiagents4pharma/talk2scholars/configs/agents/talk2scholars/__init__.py +7 -0
  206. aiagents4pharma/talk2scholars/configs/agents/talk2scholars/main_agent/__init__.py +3 -0
  207. aiagents4pharma/talk2scholars/configs/agents/talk2scholars/main_agent/default.yaml +52 -0
  208. aiagents4pharma/talk2scholars/configs/agents/talk2scholars/paper_download_agent/__init__.py +3 -0
  209. aiagents4pharma/talk2scholars/configs/agents/talk2scholars/paper_download_agent/default.yaml +19 -0
  210. aiagents4pharma/talk2scholars/configs/agents/talk2scholars/pdf_agent/__init__.py +3 -0
  211. aiagents4pharma/talk2scholars/configs/agents/talk2scholars/pdf_agent/default.yaml +19 -0
  212. aiagents4pharma/talk2scholars/configs/agents/talk2scholars/s2_agent/__init__.py +3 -0
  213. aiagents4pharma/talk2scholars/configs/agents/talk2scholars/s2_agent/default.yaml +44 -0
  214. aiagents4pharma/talk2scholars/configs/agents/talk2scholars/zotero_agent/__init__.py +3 -0
  215. aiagents4pharma/talk2scholars/configs/agents/talk2scholars/zotero_agent/default.yaml +19 -0
  216. aiagents4pharma/talk2scholars/configs/app/__init__.py +7 -0
  217. aiagents4pharma/talk2scholars/configs/app/frontend/__init__.py +3 -0
  218. aiagents4pharma/talk2scholars/configs/app/frontend/default.yaml +72 -0
  219. aiagents4pharma/talk2scholars/configs/config.yaml +16 -0
  220. aiagents4pharma/talk2scholars/configs/tools/__init__.py +21 -0
  221. aiagents4pharma/talk2scholars/configs/tools/multi_paper_recommendation/__init__.py +3 -0
  222. aiagents4pharma/talk2scholars/configs/tools/multi_paper_recommendation/default.yaml +26 -0
  223. aiagents4pharma/talk2scholars/configs/tools/paper_download/__init__.py +3 -0
  224. aiagents4pharma/talk2scholars/configs/tools/paper_download/default.yaml +124 -0
  225. aiagents4pharma/talk2scholars/configs/tools/question_and_answer/__init__.py +3 -0
  226. aiagents4pharma/talk2scholars/configs/tools/question_and_answer/default.yaml +62 -0
  227. aiagents4pharma/talk2scholars/configs/tools/retrieve_semantic_scholar_paper_id/__init__.py +3 -0
  228. aiagents4pharma/talk2scholars/configs/tools/retrieve_semantic_scholar_paper_id/default.yaml +12 -0
  229. aiagents4pharma/talk2scholars/configs/tools/search/__init__.py +3 -0
  230. aiagents4pharma/talk2scholars/configs/tools/search/default.yaml +26 -0
  231. aiagents4pharma/talk2scholars/configs/tools/single_paper_recommendation/__init__.py +3 -0
  232. aiagents4pharma/talk2scholars/configs/tools/single_paper_recommendation/default.yaml +26 -0
  233. aiagents4pharma/talk2scholars/configs/tools/zotero_read/__init__.py +3 -0
  234. aiagents4pharma/talk2scholars/configs/tools/zotero_read/default.yaml +57 -0
  235. aiagents4pharma/talk2scholars/configs/tools/zotero_write/__inti__.py +3 -0
  236. aiagents4pharma/talk2scholars/configs/tools/zotero_write/default.yaml +55 -0
  237. aiagents4pharma/talk2scholars/docker-compose/cpu/.env.example +21 -0
  238. aiagents4pharma/talk2scholars/docker-compose/cpu/docker-compose.yml +90 -0
  239. aiagents4pharma/talk2scholars/docker-compose/gpu/.env.example +21 -0
  240. aiagents4pharma/talk2scholars/docker-compose/gpu/docker-compose.yml +105 -0
  241. aiagents4pharma/talk2scholars/install.md +122 -0
  242. aiagents4pharma/talk2scholars/state/__init__.py +7 -0
  243. aiagents4pharma/talk2scholars/state/state_talk2scholars.py +98 -0
  244. aiagents4pharma/talk2scholars/tests/__init__.py +3 -0
  245. aiagents4pharma/talk2scholars/tests/test_agents_main_agent.py +256 -0
  246. aiagents4pharma/talk2scholars/tests/test_agents_paper_agents_download_agent.py +139 -0
  247. aiagents4pharma/talk2scholars/tests/test_agents_pdf_agent.py +114 -0
  248. aiagents4pharma/talk2scholars/tests/test_agents_s2_agent.py +198 -0
  249. aiagents4pharma/talk2scholars/tests/test_agents_zotero_agent.py +160 -0
  250. aiagents4pharma/talk2scholars/tests/test_s2_tools_display_dataframe.py +91 -0
  251. aiagents4pharma/talk2scholars/tests/test_s2_tools_query_dataframe.py +191 -0
  252. aiagents4pharma/talk2scholars/tests/test_states_state.py +38 -0
  253. aiagents4pharma/talk2scholars/tests/test_tools_paper_downloader.py +507 -0
  254. aiagents4pharma/talk2scholars/tests/test_tools_question_and_answer_tool.py +105 -0
  255. aiagents4pharma/talk2scholars/tests/test_tools_s2_multi.py +307 -0
  256. aiagents4pharma/talk2scholars/tests/test_tools_s2_retrieve.py +67 -0
  257. aiagents4pharma/talk2scholars/tests/test_tools_s2_search.py +286 -0
  258. aiagents4pharma/talk2scholars/tests/test_tools_s2_single.py +298 -0
  259. aiagents4pharma/talk2scholars/tests/test_utils_arxiv_downloader.py +469 -0
  260. aiagents4pharma/talk2scholars/tests/test_utils_base_paper_downloader.py +598 -0
  261. aiagents4pharma/talk2scholars/tests/test_utils_biorxiv_downloader.py +669 -0
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211
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215
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220
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223
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+ aiagents4pharma-0.0.0.dist-info/licenses/LICENSE,sha256=IcIbyB1Hyk5ZDah03VNQvJkbNk2hkBCDqQ8qtnCvB4Q,1077
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+ Wheel-Version: 1.0
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+ Generator: hatchling 1.27.0
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+ Root-Is-Purelib: true
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+ Tag: py3-none-any
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+ MIT License
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+
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+ Copyright (c) 2024 VirtualPatientEngine
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
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+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in all
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+ copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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+ SOFTWARE.