aiagents4pharma 0.0.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- aiagents4pharma/__init__.py +11 -0
- aiagents4pharma/talk2aiagents4pharma/.dockerignore +13 -0
- aiagents4pharma/talk2aiagents4pharma/Dockerfile +133 -0
- aiagents4pharma/talk2aiagents4pharma/README.md +1 -0
- aiagents4pharma/talk2aiagents4pharma/__init__.py +5 -0
- aiagents4pharma/talk2aiagents4pharma/agents/__init__.py +6 -0
- aiagents4pharma/talk2aiagents4pharma/agents/main_agent.py +70 -0
- aiagents4pharma/talk2aiagents4pharma/configs/__init__.py +5 -0
- aiagents4pharma/talk2aiagents4pharma/configs/agents/__init__.py +5 -0
- aiagents4pharma/talk2aiagents4pharma/configs/agents/main_agent/default.yaml +29 -0
- aiagents4pharma/talk2aiagents4pharma/configs/app/__init__.py +0 -0
- aiagents4pharma/talk2aiagents4pharma/configs/app/frontend/__init__.py +0 -0
- aiagents4pharma/talk2aiagents4pharma/configs/app/frontend/default.yaml +102 -0
- aiagents4pharma/talk2aiagents4pharma/configs/config.yaml +4 -0
- aiagents4pharma/talk2aiagents4pharma/docker-compose/cpu/.env.example +23 -0
- aiagents4pharma/talk2aiagents4pharma/docker-compose/cpu/docker-compose.yml +93 -0
- aiagents4pharma/talk2aiagents4pharma/docker-compose/gpu/.env.example +23 -0
- aiagents4pharma/talk2aiagents4pharma/docker-compose/gpu/docker-compose.yml +108 -0
- aiagents4pharma/talk2aiagents4pharma/install.md +154 -0
- aiagents4pharma/talk2aiagents4pharma/states/__init__.py +5 -0
- aiagents4pharma/talk2aiagents4pharma/states/state_talk2aiagents4pharma.py +18 -0
- aiagents4pharma/talk2aiagents4pharma/tests/__init__.py +3 -0
- aiagents4pharma/talk2aiagents4pharma/tests/test_main_agent.py +312 -0
- aiagents4pharma/talk2biomodels/.dockerignore +13 -0
- aiagents4pharma/talk2biomodels/Dockerfile +104 -0
- aiagents4pharma/talk2biomodels/README.md +1 -0
- aiagents4pharma/talk2biomodels/__init__.py +5 -0
- aiagents4pharma/talk2biomodels/agents/__init__.py +6 -0
- aiagents4pharma/talk2biomodels/agents/t2b_agent.py +104 -0
- aiagents4pharma/talk2biomodels/api/__init__.py +5 -0
- aiagents4pharma/talk2biomodels/api/ols.py +75 -0
- aiagents4pharma/talk2biomodels/api/uniprot.py +36 -0
- aiagents4pharma/talk2biomodels/configs/__init__.py +5 -0
- aiagents4pharma/talk2biomodels/configs/agents/__init__.py +5 -0
- aiagents4pharma/talk2biomodels/configs/agents/t2b_agent/__init__.py +3 -0
- aiagents4pharma/talk2biomodels/configs/agents/t2b_agent/default.yaml +14 -0
- aiagents4pharma/talk2biomodels/configs/app/__init__.py +0 -0
- aiagents4pharma/talk2biomodels/configs/app/frontend/__init__.py +0 -0
- aiagents4pharma/talk2biomodels/configs/app/frontend/default.yaml +72 -0
- aiagents4pharma/talk2biomodels/configs/config.yaml +7 -0
- aiagents4pharma/talk2biomodels/configs/tools/__init__.py +5 -0
- aiagents4pharma/talk2biomodels/configs/tools/ask_question/__init__.py +3 -0
- aiagents4pharma/talk2biomodels/configs/tools/ask_question/default.yaml +30 -0
- aiagents4pharma/talk2biomodels/configs/tools/custom_plotter/__init__.py +3 -0
- aiagents4pharma/talk2biomodels/configs/tools/custom_plotter/default.yaml +8 -0
- aiagents4pharma/talk2biomodels/configs/tools/get_annotation/__init__.py +3 -0
- aiagents4pharma/talk2biomodels/configs/tools/get_annotation/default.yaml +8 -0
- aiagents4pharma/talk2biomodels/install.md +63 -0
- aiagents4pharma/talk2biomodels/models/__init__.py +5 -0
- aiagents4pharma/talk2biomodels/models/basico_model.py +125 -0
- aiagents4pharma/talk2biomodels/models/sys_bio_model.py +60 -0
- aiagents4pharma/talk2biomodels/states/__init__.py +6 -0
- aiagents4pharma/talk2biomodels/states/state_talk2biomodels.py +49 -0
- aiagents4pharma/talk2biomodels/tests/BIOMD0000000449_url.xml +1585 -0
- aiagents4pharma/talk2biomodels/tests/__init__.py +3 -0
- aiagents4pharma/talk2biomodels/tests/article_on_model_537.pdf +0 -0
- aiagents4pharma/talk2biomodels/tests/test_api.py +31 -0
- aiagents4pharma/talk2biomodels/tests/test_ask_question.py +42 -0
- aiagents4pharma/talk2biomodels/tests/test_basico_model.py +67 -0
- aiagents4pharma/talk2biomodels/tests/test_get_annotation.py +190 -0
- aiagents4pharma/talk2biomodels/tests/test_getmodelinfo.py +92 -0
- aiagents4pharma/talk2biomodels/tests/test_integration.py +116 -0
- aiagents4pharma/talk2biomodels/tests/test_load_biomodel.py +35 -0
- aiagents4pharma/talk2biomodels/tests/test_param_scan.py +71 -0
- aiagents4pharma/talk2biomodels/tests/test_query_article.py +184 -0
- aiagents4pharma/talk2biomodels/tests/test_save_model.py +47 -0
- aiagents4pharma/talk2biomodels/tests/test_search_models.py +35 -0
- aiagents4pharma/talk2biomodels/tests/test_simulate_model.py +44 -0
- aiagents4pharma/talk2biomodels/tests/test_steady_state.py +86 -0
- aiagents4pharma/talk2biomodels/tests/test_sys_bio_model.py +67 -0
- aiagents4pharma/talk2biomodels/tools/__init__.py +17 -0
- aiagents4pharma/talk2biomodels/tools/ask_question.py +125 -0
- aiagents4pharma/talk2biomodels/tools/custom_plotter.py +165 -0
- aiagents4pharma/talk2biomodels/tools/get_annotation.py +342 -0
- aiagents4pharma/talk2biomodels/tools/get_modelinfo.py +159 -0
- aiagents4pharma/talk2biomodels/tools/load_arguments.py +134 -0
- aiagents4pharma/talk2biomodels/tools/load_biomodel.py +44 -0
- aiagents4pharma/talk2biomodels/tools/parameter_scan.py +310 -0
- aiagents4pharma/talk2biomodels/tools/query_article.py +64 -0
- aiagents4pharma/talk2biomodels/tools/save_model.py +98 -0
- aiagents4pharma/talk2biomodels/tools/search_models.py +96 -0
- aiagents4pharma/talk2biomodels/tools/simulate_model.py +137 -0
- aiagents4pharma/talk2biomodels/tools/steady_state.py +187 -0
- aiagents4pharma/talk2biomodels/tools/utils.py +23 -0
- aiagents4pharma/talk2cells/README.md +1 -0
- aiagents4pharma/talk2cells/__init__.py +5 -0
- aiagents4pharma/talk2cells/agents/__init__.py +6 -0
- aiagents4pharma/talk2cells/agents/scp_agent.py +87 -0
- aiagents4pharma/talk2cells/states/__init__.py +6 -0
- aiagents4pharma/talk2cells/states/state_talk2cells.py +15 -0
- aiagents4pharma/talk2cells/tests/scp_agent/test_scp_agent.py +22 -0
- aiagents4pharma/talk2cells/tools/__init__.py +6 -0
- aiagents4pharma/talk2cells/tools/scp_agent/__init__.py +6 -0
- aiagents4pharma/talk2cells/tools/scp_agent/display_studies.py +27 -0
- aiagents4pharma/talk2cells/tools/scp_agent/search_studies.py +78 -0
- aiagents4pharma/talk2knowledgegraphs/.dockerignore +13 -0
- aiagents4pharma/talk2knowledgegraphs/Dockerfile +131 -0
- aiagents4pharma/talk2knowledgegraphs/README.md +1 -0
- aiagents4pharma/talk2knowledgegraphs/__init__.py +5 -0
- aiagents4pharma/talk2knowledgegraphs/agents/__init__.py +5 -0
- aiagents4pharma/talk2knowledgegraphs/agents/t2kg_agent.py +99 -0
- aiagents4pharma/talk2knowledgegraphs/configs/__init__.py +5 -0
- aiagents4pharma/talk2knowledgegraphs/configs/agents/t2kg_agent/__init__.py +3 -0
- aiagents4pharma/talk2knowledgegraphs/configs/agents/t2kg_agent/default.yaml +62 -0
- aiagents4pharma/talk2knowledgegraphs/configs/app/__init__.py +5 -0
- aiagents4pharma/talk2knowledgegraphs/configs/app/frontend/__init__.py +3 -0
- aiagents4pharma/talk2knowledgegraphs/configs/app/frontend/default.yaml +79 -0
- aiagents4pharma/talk2knowledgegraphs/configs/config.yaml +13 -0
- aiagents4pharma/talk2knowledgegraphs/configs/tools/__init__.py +5 -0
- aiagents4pharma/talk2knowledgegraphs/configs/tools/graphrag_reasoning/__init__.py +3 -0
- aiagents4pharma/talk2knowledgegraphs/configs/tools/graphrag_reasoning/default.yaml +24 -0
- aiagents4pharma/talk2knowledgegraphs/configs/tools/multimodal_subgraph_extraction/__init__.py +0 -0
- aiagents4pharma/talk2knowledgegraphs/configs/tools/multimodal_subgraph_extraction/default.yaml +33 -0
- aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_extraction/__init__.py +3 -0
- aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_extraction/default.yaml +43 -0
- aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_summarization/__init__.py +3 -0
- aiagents4pharma/talk2knowledgegraphs/configs/tools/subgraph_summarization/default.yaml +9 -0
- aiagents4pharma/talk2knowledgegraphs/configs/utils/database/milvus/__init__.py +3 -0
- aiagents4pharma/talk2knowledgegraphs/configs/utils/database/milvus/default.yaml +61 -0
- aiagents4pharma/talk2knowledgegraphs/configs/utils/enrichments/ols_terms/default.yaml +3 -0
- aiagents4pharma/talk2knowledgegraphs/configs/utils/enrichments/reactome_pathways/default.yaml +3 -0
- aiagents4pharma/talk2knowledgegraphs/configs/utils/enrichments/uniprot_proteins/default.yaml +6 -0
- aiagents4pharma/talk2knowledgegraphs/configs/utils/pubchem_utils/default.yaml +5 -0
- aiagents4pharma/talk2knowledgegraphs/datasets/__init__.py +5 -0
- aiagents4pharma/talk2knowledgegraphs/datasets/biobridge_primekg.py +607 -0
- aiagents4pharma/talk2knowledgegraphs/datasets/dataset.py +25 -0
- aiagents4pharma/talk2knowledgegraphs/datasets/primekg.py +212 -0
- aiagents4pharma/talk2knowledgegraphs/datasets/starkqa_primekg.py +210 -0
- aiagents4pharma/talk2knowledgegraphs/docker-compose/cpu/.env.example +23 -0
- aiagents4pharma/talk2knowledgegraphs/docker-compose/cpu/docker-compose.yml +93 -0
- aiagents4pharma/talk2knowledgegraphs/docker-compose/gpu/.env.example +23 -0
- aiagents4pharma/talk2knowledgegraphs/docker-compose/gpu/docker-compose.yml +108 -0
- aiagents4pharma/talk2knowledgegraphs/entrypoint.sh +180 -0
- aiagents4pharma/talk2knowledgegraphs/install.md +165 -0
- aiagents4pharma/talk2knowledgegraphs/milvus_data_dump.py +886 -0
- aiagents4pharma/talk2knowledgegraphs/states/__init__.py +5 -0
- aiagents4pharma/talk2knowledgegraphs/states/state_talk2knowledgegraphs.py +40 -0
- aiagents4pharma/talk2knowledgegraphs/tests/__init__.py +0 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_agents_t2kg_agent.py +318 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_biobridge_primekg.py +248 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_dataset.py +33 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_primekg.py +86 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_datasets_starkqa_primekg.py +125 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_tools_graphrag_reasoning.py +257 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_tools_milvus_multimodal_subgraph_extraction.py +1444 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_tools_multimodal_subgraph_extraction.py +159 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_tools_subgraph_extraction.py +152 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_tools_subgraph_summarization.py +201 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_utils_database_milvus_connection_manager.py +812 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_embeddings.py +51 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_huggingface.py +49 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_nim_molmim.py +59 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_ollama.py +63 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_utils_embeddings_sentencetransformer.py +47 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_enrichments.py +40 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_ollama.py +94 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_ols.py +70 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_pubchem.py +45 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_reactome.py +44 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_utils_enrichments_uniprot.py +48 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_utils_extractions_milvus_multimodal_pcst.py +759 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_utils_kg_utils.py +78 -0
- aiagents4pharma/talk2knowledgegraphs/tests/test_utils_pubchem_utils.py +123 -0
- aiagents4pharma/talk2knowledgegraphs/tools/__init__.py +11 -0
- aiagents4pharma/talk2knowledgegraphs/tools/graphrag_reasoning.py +138 -0
- aiagents4pharma/talk2knowledgegraphs/tools/load_arguments.py +22 -0
- aiagents4pharma/talk2knowledgegraphs/tools/milvus_multimodal_subgraph_extraction.py +965 -0
- aiagents4pharma/talk2knowledgegraphs/tools/multimodal_subgraph_extraction.py +374 -0
- aiagents4pharma/talk2knowledgegraphs/tools/subgraph_extraction.py +291 -0
- aiagents4pharma/talk2knowledgegraphs/tools/subgraph_summarization.py +123 -0
- aiagents4pharma/talk2knowledgegraphs/utils/__init__.py +5 -0
- aiagents4pharma/talk2knowledgegraphs/utils/database/__init__.py +5 -0
- aiagents4pharma/talk2knowledgegraphs/utils/database/milvus_connection_manager.py +586 -0
- aiagents4pharma/talk2knowledgegraphs/utils/embeddings/__init__.py +5 -0
- aiagents4pharma/talk2knowledgegraphs/utils/embeddings/embeddings.py +81 -0
- aiagents4pharma/talk2knowledgegraphs/utils/embeddings/huggingface.py +111 -0
- aiagents4pharma/talk2knowledgegraphs/utils/embeddings/nim_molmim.py +54 -0
- aiagents4pharma/talk2knowledgegraphs/utils/embeddings/ollama.py +87 -0
- aiagents4pharma/talk2knowledgegraphs/utils/embeddings/sentence_transformer.py +73 -0
- aiagents4pharma/talk2knowledgegraphs/utils/enrichments/__init__.py +12 -0
- aiagents4pharma/talk2knowledgegraphs/utils/enrichments/enrichments.py +37 -0
- aiagents4pharma/talk2knowledgegraphs/utils/enrichments/ollama.py +129 -0
- aiagents4pharma/talk2knowledgegraphs/utils/enrichments/ols_terms.py +89 -0
- aiagents4pharma/talk2knowledgegraphs/utils/enrichments/pubchem_strings.py +78 -0
- aiagents4pharma/talk2knowledgegraphs/utils/enrichments/reactome_pathways.py +71 -0
- aiagents4pharma/talk2knowledgegraphs/utils/enrichments/uniprot_proteins.py +98 -0
- aiagents4pharma/talk2knowledgegraphs/utils/extractions/__init__.py +5 -0
- aiagents4pharma/talk2knowledgegraphs/utils/extractions/milvus_multimodal_pcst.py +762 -0
- aiagents4pharma/talk2knowledgegraphs/utils/extractions/multimodal_pcst.py +298 -0
- aiagents4pharma/talk2knowledgegraphs/utils/extractions/pcst.py +229 -0
- aiagents4pharma/talk2knowledgegraphs/utils/kg_utils.py +67 -0
- aiagents4pharma/talk2knowledgegraphs/utils/pubchem_utils.py +104 -0
- aiagents4pharma/talk2scholars/.dockerignore +13 -0
- aiagents4pharma/talk2scholars/Dockerfile +104 -0
- aiagents4pharma/talk2scholars/README.md +1 -0
- aiagents4pharma/talk2scholars/__init__.py +7 -0
- aiagents4pharma/talk2scholars/agents/__init__.py +13 -0
- aiagents4pharma/talk2scholars/agents/main_agent.py +89 -0
- aiagents4pharma/talk2scholars/agents/paper_download_agent.py +96 -0
- aiagents4pharma/talk2scholars/agents/pdf_agent.py +101 -0
- aiagents4pharma/talk2scholars/agents/s2_agent.py +135 -0
- aiagents4pharma/talk2scholars/agents/zotero_agent.py +127 -0
- aiagents4pharma/talk2scholars/configs/__init__.py +7 -0
- aiagents4pharma/talk2scholars/configs/agents/__init__.py +7 -0
- aiagents4pharma/talk2scholars/configs/agents/talk2scholars/__init__.py +7 -0
- aiagents4pharma/talk2scholars/configs/agents/talk2scholars/main_agent/__init__.py +3 -0
- aiagents4pharma/talk2scholars/configs/agents/talk2scholars/main_agent/default.yaml +52 -0
- aiagents4pharma/talk2scholars/configs/agents/talk2scholars/paper_download_agent/__init__.py +3 -0
- aiagents4pharma/talk2scholars/configs/agents/talk2scholars/paper_download_agent/default.yaml +19 -0
- aiagents4pharma/talk2scholars/configs/agents/talk2scholars/pdf_agent/__init__.py +3 -0
- aiagents4pharma/talk2scholars/configs/agents/talk2scholars/pdf_agent/default.yaml +19 -0
- aiagents4pharma/talk2scholars/configs/agents/talk2scholars/s2_agent/__init__.py +3 -0
- aiagents4pharma/talk2scholars/configs/agents/talk2scholars/s2_agent/default.yaml +44 -0
- aiagents4pharma/talk2scholars/configs/agents/talk2scholars/zotero_agent/__init__.py +3 -0
- aiagents4pharma/talk2scholars/configs/agents/talk2scholars/zotero_agent/default.yaml +19 -0
- aiagents4pharma/talk2scholars/configs/app/__init__.py +7 -0
- aiagents4pharma/talk2scholars/configs/app/frontend/__init__.py +3 -0
- aiagents4pharma/talk2scholars/configs/app/frontend/default.yaml +72 -0
- aiagents4pharma/talk2scholars/configs/config.yaml +16 -0
- aiagents4pharma/talk2scholars/configs/tools/__init__.py +21 -0
- aiagents4pharma/talk2scholars/configs/tools/multi_paper_recommendation/__init__.py +3 -0
- aiagents4pharma/talk2scholars/configs/tools/multi_paper_recommendation/default.yaml +26 -0
- aiagents4pharma/talk2scholars/configs/tools/paper_download/__init__.py +3 -0
- aiagents4pharma/talk2scholars/configs/tools/paper_download/default.yaml +124 -0
- aiagents4pharma/talk2scholars/configs/tools/question_and_answer/__init__.py +3 -0
- aiagents4pharma/talk2scholars/configs/tools/question_and_answer/default.yaml +62 -0
- aiagents4pharma/talk2scholars/configs/tools/retrieve_semantic_scholar_paper_id/__init__.py +3 -0
- aiagents4pharma/talk2scholars/configs/tools/retrieve_semantic_scholar_paper_id/default.yaml +12 -0
- aiagents4pharma/talk2scholars/configs/tools/search/__init__.py +3 -0
- aiagents4pharma/talk2scholars/configs/tools/search/default.yaml +26 -0
- aiagents4pharma/talk2scholars/configs/tools/single_paper_recommendation/__init__.py +3 -0
- aiagents4pharma/talk2scholars/configs/tools/single_paper_recommendation/default.yaml +26 -0
- aiagents4pharma/talk2scholars/configs/tools/zotero_read/__init__.py +3 -0
- aiagents4pharma/talk2scholars/configs/tools/zotero_read/default.yaml +57 -0
- aiagents4pharma/talk2scholars/configs/tools/zotero_write/__inti__.py +3 -0
- aiagents4pharma/talk2scholars/configs/tools/zotero_write/default.yaml +55 -0
- aiagents4pharma/talk2scholars/docker-compose/cpu/.env.example +21 -0
- aiagents4pharma/talk2scholars/docker-compose/cpu/docker-compose.yml +90 -0
- aiagents4pharma/talk2scholars/docker-compose/gpu/.env.example +21 -0
- aiagents4pharma/talk2scholars/docker-compose/gpu/docker-compose.yml +105 -0
- aiagents4pharma/talk2scholars/install.md +122 -0
- aiagents4pharma/talk2scholars/state/__init__.py +7 -0
- aiagents4pharma/talk2scholars/state/state_talk2scholars.py +98 -0
- aiagents4pharma/talk2scholars/tests/__init__.py +3 -0
- aiagents4pharma/talk2scholars/tests/test_agents_main_agent.py +256 -0
- aiagents4pharma/talk2scholars/tests/test_agents_paper_agents_download_agent.py +139 -0
- aiagents4pharma/talk2scholars/tests/test_agents_pdf_agent.py +114 -0
- aiagents4pharma/talk2scholars/tests/test_agents_s2_agent.py +198 -0
- aiagents4pharma/talk2scholars/tests/test_agents_zotero_agent.py +160 -0
- aiagents4pharma/talk2scholars/tests/test_s2_tools_display_dataframe.py +91 -0
- aiagents4pharma/talk2scholars/tests/test_s2_tools_query_dataframe.py +191 -0
- aiagents4pharma/talk2scholars/tests/test_states_state.py +38 -0
- aiagents4pharma/talk2scholars/tests/test_tools_paper_downloader.py +507 -0
- aiagents4pharma/talk2scholars/tests/test_tools_question_and_answer_tool.py +105 -0
- aiagents4pharma/talk2scholars/tests/test_tools_s2_multi.py +307 -0
- aiagents4pharma/talk2scholars/tests/test_tools_s2_retrieve.py +67 -0
- aiagents4pharma/talk2scholars/tests/test_tools_s2_search.py +286 -0
- aiagents4pharma/talk2scholars/tests/test_tools_s2_single.py +298 -0
- aiagents4pharma/talk2scholars/tests/test_utils_arxiv_downloader.py +469 -0
- aiagents4pharma/talk2scholars/tests/test_utils_base_paper_downloader.py +598 -0
- aiagents4pharma/talk2scholars/tests/test_utils_biorxiv_downloader.py +669 -0
- aiagents4pharma/talk2scholars/tests/test_utils_medrxiv_downloader.py +500 -0
- aiagents4pharma/talk2scholars/tests/test_utils_nvidia_nim_reranker.py +117 -0
- aiagents4pharma/talk2scholars/tests/test_utils_pdf_answer_formatter.py +67 -0
- aiagents4pharma/talk2scholars/tests/test_utils_pdf_batch_processor.py +92 -0
- aiagents4pharma/talk2scholars/tests/test_utils_pdf_collection_manager.py +173 -0
- aiagents4pharma/talk2scholars/tests/test_utils_pdf_document_processor.py +68 -0
- aiagents4pharma/talk2scholars/tests/test_utils_pdf_generate_answer.py +72 -0
- aiagents4pharma/talk2scholars/tests/test_utils_pdf_gpu_detection.py +129 -0
- aiagents4pharma/talk2scholars/tests/test_utils_pdf_paper_loader.py +116 -0
- aiagents4pharma/talk2scholars/tests/test_utils_pdf_rag_pipeline.py +88 -0
- aiagents4pharma/talk2scholars/tests/test_utils_pdf_retrieve_chunks.py +190 -0
- aiagents4pharma/talk2scholars/tests/test_utils_pdf_singleton_manager.py +159 -0
- aiagents4pharma/talk2scholars/tests/test_utils_pdf_vector_normalization.py +121 -0
- aiagents4pharma/talk2scholars/tests/test_utils_pdf_vector_store.py +406 -0
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