afrc 0.4.1__py3-none-any.whl

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Files changed (34) hide show
  1. afrc/__init__.py +21 -0
  2. afrc/_version.py +1 -0
  3. afrc/afrc.py +937 -0
  4. afrc/config.py +104 -0
  5. afrc/data/README.md +21 -0
  6. afrc/data/look_and_say.dat +15 -0
  7. afrc/exceptions.py +21 -0
  8. afrc/iofunctions.py +61 -0
  9. afrc/polymer.py +376 -0
  10. afrc/polymer_models/__init__.py +0 -0
  11. afrc/polymer_models/fjc.py +252 -0
  12. afrc/polymer_models/frc.py +255 -0
  13. afrc/polymer_models/nudep_saw.py +419 -0
  14. afrc/polymer_models/saw.py +264 -0
  15. afrc/polymer_models/wlc.py +209 -0
  16. afrc/polymer_models/wlc2.py +271 -0
  17. afrc/py.typed +0 -0
  18. afrc/tests/__init__.py +3 -0
  19. afrc/tests/conftest.py +38 -0
  20. afrc/tests/test_afrc.py +264 -0
  21. afrc/tests/test_config.py +37 -0
  22. afrc/tests/test_fjc.py +71 -0
  23. afrc/tests/test_frc.py +82 -0
  24. afrc/tests/test_iofunctions.py +29 -0
  25. afrc/tests/test_nudep_saw.py +77 -0
  26. afrc/tests/test_polymer.py +91 -0
  27. afrc/tests/test_saw.py +93 -0
  28. afrc/tests/test_wlc.py +45 -0
  29. afrc/tests/test_wlc2.py +77 -0
  30. afrc-0.4.1.dist-info/METADATA +166 -0
  31. afrc-0.4.1.dist-info/RECORD +34 -0
  32. afrc-0.4.1.dist-info/WHEEL +5 -0
  33. afrc-0.4.1.dist-info/licenses/LICENSE +57 -0
  34. afrc-0.4.1.dist-info/top_level.txt +1 -0
afrc/__init__.py ADDED
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+ """
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+ AFRC
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+ An analytical version of the Flory Random Coil for polypeptides, implemented using the rotational isomeric state
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+ approximation of Flory and Volkenstein and parameterized on the excluded volumed dihedral backbone maps.
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+
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+ Copyright Alex Holehouse 2018-2022 (holehouselab.com).
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+
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+ For any questions please contact Alex.
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+
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+ """
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+
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+ # Add imports here
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+ from afrc.afrc import * # noqa: F401,F403
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+ import os
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+
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+ # Generate _version.py if missing and in the Read the Docs environment
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+ if os.getenv("READTHEDOCS") == "True" and not os.path.isfile('../afrc/_version.py'):
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+ import versioningit
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+ __version__ = versioningit.get_version('../')
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+ else:
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+ from ._version import __version__ # noqa: F401
afrc/_version.py ADDED
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+ __version__ = "0.4.1"