aetherscan 1.0.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- aetherscan/__init__.py +45 -0
- aetherscan/benchmark.py +179 -0
- aetherscan/candidate_figures.py +328 -0
- aetherscan/cli.py +3032 -0
- aetherscan/config.py +1002 -0
- aetherscan/dashboard.py +709 -0
- aetherscan/dashboard_cli.py +51 -0
- aetherscan/dashboard_launcher.py +194 -0
- aetherscan/data_generation.py +1448 -0
- aetherscan/db/__init__.py +21 -0
- aetherscan/db/db.py +2789 -0
- aetherscan/hf_hub.py +547 -0
- aetherscan/inference.py +912 -0
- aetherscan/inference_viz.py +1494 -0
- aetherscan/latent_gif.py +512 -0
- aetherscan/latent_variants.py +352 -0
- aetherscan/logger/__init__.py +21 -0
- aetherscan/logger/logger.py +467 -0
- aetherscan/logger/slack_handler.py +760 -0
- aetherscan/main.py +1269 -0
- aetherscan/manager/__init__.py +21 -0
- aetherscan/manager/manager.py +781 -0
- aetherscan/models/__init__.py +21 -0
- aetherscan/models/random_forest.py +171 -0
- aetherscan/models/vae.py +849 -0
- aetherscan/monitor/__init__.py +19 -0
- aetherscan/monitor/monitor.py +935 -0
- aetherscan/pfb.py +161 -0
- aetherscan/preprocessing.py +2718 -0
- aetherscan/rf_metrics.py +100 -0
- aetherscan/round_data.py +932 -0
- aetherscan/run_state.py +277 -0
- aetherscan/seeding.py +160 -0
- aetherscan/shap_parallel.py +238 -0
- aetherscan/tag_guards.py +206 -0
- aetherscan/train.py +7681 -0
- aetherscan-1.0.0.dist-info/METADATA +1187 -0
- aetherscan-1.0.0.dist-info/RECORD +41 -0
- aetherscan-1.0.0.dist-info/WHEEL +4 -0
- aetherscan-1.0.0.dist-info/entry_points.txt +2 -0
- aetherscan-1.0.0.dist-info/licenses/LICENSE +13 -0
aetherscan/rf_metrics.py
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"""
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Pure Random Forest eval-metric computation for Aetherscan Pipeline.
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Deliberately TF-free (numpy + sklearn.metrics only; no aetherscan.models import — that
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package's __init__ pulls in TensorFlow via vae.py) so the helper stays unit-testable
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without the GPU stack. train.py calls compute_rf_eval_metrics() at the tail of
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train_random_forest() and persists each returned scalar to training_stats via
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db.write_training_stat(model_name="rf", ...) for the live dashboard's RF tab.
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"""
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from __future__ import annotations
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import logging
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import numpy as np
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from sklearn.metrics import (
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average_precision_score,
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brier_score_loss,
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confusion_matrix,
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roc_auc_score,
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)
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logger = logging.getLogger(__name__)
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# Persisted quantiles of the val P(true) distribution (stat_name val_proba_q{QQ})
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_CONFIDENCE_QUANTILES = (5, 25, 50, 75, 95)
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def compute_rf_eval_metrics(
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val_binary_labels: np.ndarray,
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val_subtype_labels: np.ndarray,
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val_probas: np.ndarray,
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val_preds: np.ndarray,
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) -> dict[str, float]:
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"""
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Compute the scalar RF validation metrics persisted to training_stats (model_name='rf').
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Inputs are the aligned per-cadence arrays already built by train_random_forest():
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binary ground truth (0/1), sub-type ground truth (false_no_signal / false_with_rfi /
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true_only_eti / true_eti_rfi), ensemble P(true), and thresholded predictions (at
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inference.classification_threshold). Returns a flat {stat_name: float} dict:
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val_accuracy / val_roc_auc / val_average_precision / val_brier_score
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val_accuracy_{subtype} binary correctness within each sub-type
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confusion_{tn,fp,fn,tp} binary 2x2 confusion cell counts
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confusion_{subtype}_pred_{false,true} sub-type x predicted-class cell counts
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val_proba_q{05,...,95} confidence-distribution quantiles
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The ranking metrics (ROC-AUC / average precision) are threshold-free; accuracy and the
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confusion cells reflect val_preds' operating point (the deployment threshold). On a
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degenerate single-class val split the ranking metrics are undefined, so their two keys
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are omitted (the dashboard renders absent tiles as an em dash) and everything else
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still lands.
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"""
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val_binary_labels = np.asarray(val_binary_labels)
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val_subtype_labels = np.asarray(val_subtype_labels)
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val_probas = np.asarray(val_probas, dtype=np.float64)
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val_preds = np.asarray(val_preds)
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metrics: dict[str, float] = {
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"val_accuracy": float(np.mean(val_preds == val_binary_labels)),
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"val_brier_score": float(brier_score_loss(val_binary_labels, val_probas)),
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}
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# Ranking metrics are undefined when only one class is present: roc_auc_score raises
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# ValueError and average_precision_score silently degenerates (all-negative labels
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# -> -0.0 with a warning). Omit both keys in that case rather than letting the raise
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# reach the caller's blanket best-effort guard and lose the whole dict.
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if np.unique(val_binary_labels).size > 1:
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metrics["val_roc_auc"] = float(roc_auc_score(val_binary_labels, val_probas))
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metrics["val_average_precision"] = float(
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average_precision_score(val_binary_labels, val_probas)
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)
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else:
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logger.warning(
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"Single-class val split: omitting undefined val_roc_auc / val_average_precision"
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)
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# Binary 2x2 cells (explicit label order keeps the cell layout stable regardless of
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# which classes appear in the val split)
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tn, fp, fn, tp = confusion_matrix(val_binary_labels, val_preds, labels=[0, 1]).ravel()
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metrics["confusion_tn"] = float(tn)
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metrics["confusion_fp"] = float(fp)
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metrics["confusion_fn"] = float(fn)
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metrics["confusion_tp"] = float(tp)
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# Per-sub-type binary accuracy + sub-type x predicted-class cell counts
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correct = val_preds == val_binary_labels
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for subtype in np.unique(val_subtype_labels):
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mask = val_subtype_labels == subtype
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metrics[f"val_accuracy_{subtype}"] = float(np.mean(correct[mask]))
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n_pred_true = int(np.sum(val_preds[mask] == 1))
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metrics[f"confusion_{subtype}_pred_true"] = float(n_pred_true)
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metrics[f"confusion_{subtype}_pred_false"] = float(int(np.sum(mask)) - n_pred_true)
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# Confidence-distribution quantiles of val P(true)
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for q in _CONFIDENCE_QUANTILES:
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metrics[f"val_proba_q{q:02d}"] = float(np.quantile(val_probas, q / 100))
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return metrics
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