accusleepy 0.4.3__py3-none-any.whl → 0.4.5__py3-none-any.whl

accusleepy/gui/main.py

@@ -51,7 +51,7 @@ from accusleepy.signal_processing import (
 )
 
 # max number of messages to display
-MESSAGE_BOX_MAX_DEPTH = 50
+MESSAGE_BOX_MAX_DEPTH = 200
 LABEL_LENGTH_ERROR = "label file length does not match recording length"
 # relative path to config guide txt file
 CONFIG_GUIDE_FILE = os.path.normpath(r"text/config_guide.txt")
@@ -294,7 +294,7 @@ class AccuSleepWindow(QtWidgets.QMainWindow):
             error_message = self.check_single_file_inputs(recording_index)
             if error_message:
                 self.show_message(
-                    f"ERROR ({self.recordings[recording_index].name}): {error_message}"
+                    f"ERROR (recording {self.recordings[recording_index].name}): {error_message}"
                 )
                 return
 
@@ -431,7 +431,7 @@ class AccuSleepWindow(QtWidgets.QMainWindow):
                     f"error on recording {self.recordings[recording_index].name}"
                 )
                 self.show_message(
-                    f"ERROR ({self.recordings[recording_index].name}): {error_message}"
+                    f"ERROR (recording {self.recordings[recording_index].name}): {error_message}"
                 )
                 return
             if self.recordings[recording_index].calibration_file == "":
@@ -440,7 +440,7 @@ class AccuSleepWindow(QtWidgets.QMainWindow):
                 )
                 self.show_message(
                     (
-                        f"ERROR ({self.recordings[recording_index].name}): "
+                        f"ERROR (recording {self.recordings[recording_index].name}): "
                         "no calibration file selected"
                     )
                 )
@@ -752,7 +752,7 @@ class AccuSleepWindow(QtWidgets.QMainWindow):
         self.recordings[self.recording_index].calibration_file = filename
         self.ui.calibration_file_label.setText(filename)
 
-    def check_single_file_inputs(self, recording_index: int) -> str:
+    def check_single_file_inputs(self, recording_index: int) -> str | None:
         """Check that a recording's inputs appear valid
 
         This runs some basic tests for whether it will be possible to
@@ -772,6 +772,8 @@ class AccuSleepWindow(QtWidgets.QMainWindow):
             return "invalid epoch length or sampling rate"
         if self.recordings[self.recording_index].recording_file == "":
             return "no recording selected"
+        if not os.path.isfile(self.recordings[self.recording_index].recording_file):
+            return "recording file does not exist"
         if self.recordings[self.recording_index].label_file == "":
             return "no label file selected"
 

accusleepy/gui/manual_scoring.py

@@ -446,8 +446,6 @@ class ManualScoringWindow(QtWidgets.QDialog):
         self.label_img = create_label_img(
             self.display_labels, self.label_display_options
         )
-        # update the plots
-        self.update_figures()
 
     def redo(self) -> None:
         """Redo the last change to brain state labels that was undone"""
@@ -716,7 +714,6 @@ class ManualScoringWindow(QtWidgets.QDialog):
         self.ui.upperfigure.canvas.axes[2].set_xlim(
             (self.upper_left_epoch, self.upper_right_epoch + 1)
         )
-        self.ui.upperfigure.canvas.draw()
 
     def zoom_x(self, direction: str) -> None:
         """Change upper figure x-axis zoom level
@@ -754,6 +751,7 @@ class ManualScoringWindow(QtWidgets.QDialog):
             self.upper_left_epoch = 0
             self.upper_right_epoch = self.n_epochs - 1
         self.adjust_upper_figure_x_limits()
+        self.ui.upperfigure.canvas.draw()
 
     def modify_current_epoch_label(self, digit: int) -> None:
         """Change the current epoch's brain state label
@@ -974,8 +972,6 @@ class ManualScoringWindow(QtWidgets.QDialog):
         else:
             self.upper_left_epoch = self.epoch - upper_epoch_padding
             self.upper_right_epoch = self.epoch + upper_epoch_padding
-        # update upper marker
-        self.update_upper_marker()
         self.adjust_upper_figure_x_limits()
 
         # update lower figure x-axis range
@@ -990,7 +986,7 @@ class ManualScoringWindow(QtWidgets.QDialog):
             self.lower_left_epoch = self.epoch - lower_epoch_padding
             self.lower_right_epoch = self.epoch + lower_epoch_padding
 
-        self.update_lower_figure()
+        self.update_figures()
 
 
 def convert_labels(labels: np.array, style: str) -> np.array:

{accusleepy-0.4.3.dist-info → accusleepy-0.4.5.dist-info}/METADATA

@@ -1,16 +1,16 @@
 Metadata-Version: 2.3
 Name: accusleepy
-Version: 0.4.3
+Version: 0.4.5
 Summary: Python implementation of AccuSleep
 License: GPL-3.0-only
 Author: Zeke Barger
 Author-email: zekebarger@gmail.com
-Requires-Python: >=3.10,<3.13
+Requires-Python: >=3.11,<3.14
 Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
 Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
 Requires-Dist: fastparquet (>=2024.11.0,<2025.0.0)
 Requires-Dist: joblib (>=1.4.2,<2.0.0)
 Requires-Dist: matplotlib (>=3.10.1,<4.0.0)
@@ -18,7 +18,7 @@ Requires-Dist: numpy (>=2.2.4,<3.0.0)
 Requires-Dist: pandas (>=2.2.3,<3.0.0)
 Requires-Dist: pillow (>=11.1.0,<12.0.0)
 Requires-Dist: pre-commit (>=4.2.0,<5.0.0)
-Requires-Dist: pyside6 (>=6.7.1,<6.8.0)
+Requires-Dist: pyside6 (>=6.9.0,<7.0.0)
 Requires-Dist: scipy (>=1.15.2,<2.0.0)
 Requires-Dist: toml (>=0.10.2,<0.11.0)
 Requires-Dist: torch (>=2.6.0,<3.0.0)
@@ -30,9 +30,17 @@ Description-Content-Type: text/markdown
 
 ## Description
 
-AccuSleePy is a python implementation of AccuSleep--a set of graphical user interfaces for scoring rodent
-sleep using EEG and EMG recordings. It offers several improvements over the original MATLAB version
-and is the only version that will be actively maintained.
+AccuSleePy is set of graphical user  interfaces for scoring rodent sleep
+using EEG and EMG recordings.
+It offers the following improvements over the MATLAB version (AccuSleep):
+
+- Up to 10 brain states can be configured through the user interface
+- Classification models can be trained through the user interface
+    - Model files contain useful metadata (brain state configuration,
+      epoch length, number of epochs)
+    - Models optimized for real-time scoring can be trained
+- Lists of recordings can be imported and exported for repeatable batch processing
+- Undo/redo functionality in the manual scoring interface
 
 If you use AccuSleep in your research, please cite our
 [publication](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0224642):
@@ -43,16 +51,20 @@ The data and models associated with AccuSleep are available at https://osf.io/py
 
 Please contact zekebarger (at) gmail (dot) com with any questions or comments about the software.
 
+
 ## Installation
 
 - (recommended) create a new virtual environment (using
 [venv](https://docs.python.org/3/library/venv.html),
 [conda](https://docs.conda.io/projects/conda/en/latest/user-guide/tasks/manage-environments.html),
-etc.) using python >=3.10,<3.13
+etc.) with python >=3.11,<3.14
 - (optional) if you have a CUDA device and want to speed up model training, [install PyTorch](https://pytorch.org/)
 - `pip install accusleepy`
 - (optional) download a classification model from https://osf.io/py5eb/ under /python_format/models/
 
+Note that upgrading or reinstalling the package will overwrite any changes
+to the [config file](accusleepy/config.json).
+
 ## Usage
 
 `python -m accusleepy` will open the primary interface.
@@ -61,7 +73,16 @@ etc.) using python >=3.10,<3.13
 
 [Guide to the manual scoring interface](accusleepy/gui/text/manual_scoring_guide.md)
 
+## Changelog
+
+- 0.4.5: Added support for python 3.13, **removed support for python 3.10.**
+- 0.4.4: Performance improvements
+- 0.4.3: Improved unit tests and user manuals
+- 0.4.0: Improved visuals and user manuals
+- 0.1.0-0.3.1: Early development versions
+
 ## Screenshots
+
 Primary interface
 ![AccuSleePy primary interface](accusleepy/gui/images/primary_window.png)
 

{accusleepy-0.4.3.dist-info → accusleepy-0.4.5.dist-info}/RECORD

@@ -17,11 +17,11 @@ accusleepy/gui/icons/save.png,sha256=J3EA8iU1BqLYRSsrq_OdoZlqrv2yfL7oV54DklTy_DI
 accusleepy/gui/icons/up_arrow.png,sha256=V9yF9t1WgjPaUu-mF1YGe_DfaRHg2dUpR_sUVVcvVvY,3329
 accusleepy/gui/icons/zoom_in.png,sha256=MFWnKZp7Rvh4bLPq4Cqo4sB_jQYedUUtT8-ZO8tNYyc,13589
 accusleepy/gui/icons/zoom_out.png,sha256=IB8Jecb3i0U4qjWRR46ridjLpvLCSe7PozBaLqQqYSw,13055
-accusleepy/gui/images/primary_window.png,sha256=bT-A7ZPndVnJv3cX5DuzDwcZ44alz3GGIy7MxU0rtiA,593548
+accusleepy/gui/images/primary_window.png,sha256=x_ppmv0fKySxXAzbQHCv5JFLdM2ETTxJqUHyPVo5xck,596421
 accusleepy/gui/images/viewer_window.png,sha256=gKwIXkgsl1rTMfmMeMwNyjEAUL5I6FXk9-hpMR92qTI,970630
 accusleepy/gui/images/viewer_window_annotated.png,sha256=M5NmoWDHRLS334Rp8SsfOPUUXzPltH1p7aB0BrISgQU,261481
-accusleepy/gui/main.py,sha256=GTHsUL9UPosDwzy86ohLj0Tok1OkqYBSl0Ba8Saq2Xs,54210
-accusleepy/gui/manual_scoring.py,sha256=l1m7MIY2SgNAYJFe7_hrvQUcZ2w7r5U82iX1dab86LI,40623
+accusleepy/gui/main.py,sha256=QLtxVvBz81CjDeBddJZNDCLd207j9WJga1n45nlsxWI,54384
+accusleepy/gui/manual_scoring.py,sha256=Sy4vwMmMLY_SreXUyxd0t-at2F-1pHkvvz1UGIbzVic,40496
 accusleepy/gui/mplwidget.py,sha256=f9O3u_96whQGUwpi3o_QGc7yjiETX5vE0oj3ePXTJWE,12279
 accusleepy/gui/primary_window.py,sha256=RXpDvcb7zy8Ea4Da1VhMG1T6GC54KW3vyGjqqQJN45k,104582
 accusleepy/gui/primary_window.ui,sha256=09k4xFcjgOL9mlhFlg6mXCc_tgj4_FY9CZ3H03e3z3A,147074
@@ -35,6 +35,6 @@ accusleepy/gui/viewer_window.ui,sha256=D1LwUFR-kZ_GWGZFFtXvGJdFWghLrOWZTblQeLQt9
 accusleepy/models.py,sha256=Muapsw088AUHqRIbW97Rkbv0oiwCtQvO9tEoBCC-MYg,1476
 accusleepy/multitaper.py,sha256=V6MJDk0OSWhg2MFhrnt9dvYrHiNsk2T7IxAA7paZVyE,25549
 accusleepy/signal_processing.py,sha256=-aXnywfp1LBsk3DcbIMmZlgv3f8j6sZ6js0bizZId0o,21718
-accusleepy-0.4.3.dist-info/METADATA,sha256=ooPrsNpkjVtzsWovyX30OW5qlcQgOW1bs1P7sHA3UDc,3137
-accusleepy-0.4.3.dist-info/WHEEL,sha256=fGIA9gx4Qxk2KDKeNJCbOEwSrmLtjWCwzBz351GyrPQ,88
-accusleepy-0.4.3.dist-info/RECORD,,
+accusleepy-0.4.5.dist-info/METADATA,sha256=qKYYF4smvfZF2l92BjYNpDyT6mB6QTqg10kw4MAxtRU,3875
+accusleepy-0.4.5.dist-info/WHEEL,sha256=fGIA9gx4Qxk2KDKeNJCbOEwSrmLtjWCwzBz351GyrPQ,88
+accusleepy-0.4.5.dist-info/RECORD,,