academia-mcp 1.3.0__py3-none-any.whl → 1.4.1__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- academia_mcp/files.py +1 -0
- academia_mcp/latex_templates/agents4science_2025/agents4science_2025.sty +398 -0
- academia_mcp/latex_templates/agents4science_2025/agents4science_2025.tex +686 -0
- academia_mcp/server.py +10 -2
- academia_mcp/tools/__init__.py +10 -2
- academia_mcp/tools/latex.py +151 -0
- {academia_mcp-1.3.0.dist-info → academia_mcp-1.4.1.dist-info}/METADATA +1 -6
- {academia_mcp-1.3.0.dist-info → academia_mcp-1.4.1.dist-info}/RECORD +12 -10
- academia_mcp/tools/md_to_pdf.py +0 -411
- {academia_mcp-1.3.0.dist-info → academia_mcp-1.4.1.dist-info}/WHEEL +0 -0
- {academia_mcp-1.3.0.dist-info → academia_mcp-1.4.1.dist-info}/entry_points.txt +0 -0
- {academia_mcp-1.3.0.dist-info → academia_mcp-1.4.1.dist-info}/licenses/LICENSE +0 -0
- {academia_mcp-1.3.0.dist-info → academia_mcp-1.4.1.dist-info}/top_level.txt +0 -0
academia_mcp/files.py
CHANGED
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% Partial rewrite of the LaTeX2e package for submissions to the
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% Open Conference of AI Agents for Science (agents4science):
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%
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% - Based on the NeurIPS 2025 style file by Roman Garnett et al.
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% - Style modified for visual distinction (e.g., title rule)
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% - Conference name, year, and details updated
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% - Track options simplified for a general conference
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%
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% Last revision: July 2025
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\NeedsTeXFormat{LaTeX2e}
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\ProvidesPackage{agents4science_2025}[2025/07/22 agents4science 2025 submission/camera-ready style file]
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% declare final option, which creates camera-ready copy
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\newif\if@agentsfinal\@agentsfinalfalse
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\DeclareOption{final}{
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\@agentsfinaltrue
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\@anonymousfalse
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}
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% declare nonatbib option, which does not load natbib in case of
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% package clash (users can pass options to natbib via
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% \PassOptionsToPackage)
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\newif\if@natbib\@natbibtrue
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\DeclareOption{nonatbib}{
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\@natbibfalse
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}
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% declare preprint option, which creates a preprint version ready for
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% upload to, e.g., arXiv
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\newif\if@preprint\@preprintfalse
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\DeclareOption{preprint}{
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\@preprinttrue
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\@anonymousfalse
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}
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% determine the track of the paper in camera-ready mode
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\newif\if@main\@maintrue
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\DeclareOption{main}{
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\@maintrue
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\newcommand{\@trackname}{\@agentsordinal\ Open Conference of AI Agents for Science (agents4science \@agentsyear).}
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}
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% For anonymous or non-anonymous
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\newif\if@anonymous\@anonymoustrue
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% For workshop papers
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\newcommand{\@workshoptitle}{}
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\newcommand{\workshoptitle}[1]{\renewcommand{\@workshoptitle}{#1}}
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\newif\if@workshop\@workshopfalse
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\DeclareOption{sglblindworkshop}{
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\@workshoptrue
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\@anonymousfalse
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\newcommand{\@trackname}{\@agentsordinal\ Open Conference on AI Agents for Science (agents4science \@agentsyear) Workshop: \@workshoptitle.}
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}
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\DeclareOption{dblblindworkshop}{
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\@workshoptrue
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\newcommand{\@trackname}{\@agentsordinal\ Open Conference on AI Agents for Science (agents4science \@agentsyear) Workshop: \@workshoptitle.}
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}
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\ProcessOptions\relax
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% fonts
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\renewcommand{\rmdefault}{ptm}
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\renewcommand{\sfdefault}{phv}
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% change this every year for notice string at bottom
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\newcommand{\@agentsordinal}{1st}
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\newcommand{\@agentsyear}{2025}
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\newcommand{\@agentslocation}{Virtual}
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% acknowledgments
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\usepackage{environ}
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\newcommand{\acksection}{\section*{Acknowledgments and Disclosure of Funding}}
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\NewEnviron{ack}{%
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\acksection
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\BODY
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}
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% load natbib unless told otherwise
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\if@natbib
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\RequirePackage{natbib}
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\fi
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% set page geometry
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\usepackage[verbose=true,letterpaper]{geometry}
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\AtBeginDocument{
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\newgeometry{
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textheight=9in,
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textwidth=5.5in,
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top=1in,
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headheight=12pt,
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headsep=25pt,
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footskip=30pt
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}
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\@ifpackageloaded{fullpage}
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{\PackageWarning{agents4science_2025}{fullpage package not allowed! Overwriting formatting.}}
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{}
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}
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\widowpenalty=10000
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\clubpenalty=10000
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\flushbottom
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\sloppy
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% font sizes with reduced leading
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\renewcommand{\normalsize}{%
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\@setfontsize\normalsize\@xpt\@xipt
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\abovedisplayskip 7\p@ \@plus 2\p@ \@minus 5\p@
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\abovedisplayshortskip \z@ \@plus 3\p@
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\belowdisplayskip \abovedisplayskip
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\belowdisplayshortskip 4\p@ \@plus 3\p@ \@minus 3\p@
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}
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\normalsize
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\renewcommand{\small}{%
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\@setfontsize\small\@ixpt\@xpt
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\abovedisplayskip 6\p@ \@plus 1.5\p@ \@minus 4\p@
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\abovedisplayshortskip \z@ \@plus 2\p@
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\belowdisplayskip \abovedisplayskip
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\belowdisplayshortskip 3\p@ \@plus 2\p@ \@minus 2\p@
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}
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\renewcommand{\footnotesize}{\@setfontsize\footnotesize\@ixpt\@xpt}
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\renewcommand{\scriptsize}{\@setfontsize\scriptsize\@viipt\@viiipt}
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\renewcommand{\tiny}{\@setfontsize\tiny\@vipt\@viipt}
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\renewcommand{\large}{\@setfontsize\large\@xiipt{14}}
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\renewcommand{\Large}{\@setfontsize\Large\@xivpt{16}}
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\renewcommand{\LARGE}{\@setfontsize\LARGE\@xviipt{20}}
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\renewcommand{\huge}{\@setfontsize\huge\@xxpt{23}}
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\renewcommand{\Huge}{\@setfontsize\Huge\@xxvpt{28}}
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% sections with less space
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\providecommand{\section}{}
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\renewcommand{\section}{%
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\@startsection{section}{1}{\z@}%
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{-2.0ex \@plus -0.5ex \@minus -0.2ex}%
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{ 1.5ex \@plus 0.3ex \@minus 0.2ex}%
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{\large\bf\raggedright}%
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}
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\providecommand{\subsection}{}
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\renewcommand{\subsection}{%
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\@startsection{subsection}{2}{\z@}%
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{-1.8ex \@plus -0.5ex \@minus -0.2ex}%
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{ 0.8ex \@plus 0.2ex}%
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{\normalsize\bf\raggedright}%
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}
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\providecommand{\subsubsection}{}
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\renewcommand{\subsubsection}{%
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\@startsection{subsubsection}{3}{\z@}%
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{-1.5ex \@plus -0.5ex \@minus -0.2ex}%
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{ 0.5ex \@plus 0.2ex}%
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{\normalsize\bf\raggedright}%
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}
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\providecommand{\paragraph}{}
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\renewcommand{\paragraph}{%
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\@startsection{paragraph}{4}{\z@}%
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{1.5ex \@plus 0.5ex \@minus 0.2ex}%
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{-1em}%
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{\normalsize\bf}%
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}
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\providecommand{\subparagraph}{}
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\renewcommand{\subparagraph}{%
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\@startsection{subparagraph}{5}{\z@}%
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{1.5ex \@plus 0.5ex \@minus 0.2ex}%
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{-1em}%
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{\normalsize\bf}%
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}
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\providecommand{\subsubsubsection}{}
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\renewcommand{\subsubsubsection}{%
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\vskip5pt{\noindent\normalsize\rm\raggedright}%
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}
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% float placement
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\renewcommand{\topfraction }{0.85}
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\renewcommand{\bottomfraction }{0.4}
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\renewcommand{\textfraction }{0.1}
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\renewcommand{\floatpagefraction}{0.7}
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\newlength{\@agentsabovecaptionskip}\setlength{\@agentsabovecaptionskip}{7\p@}
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\newlength{\@agentsbelowcaptionskip}\setlength{\@agentsbelowcaptionskip}{\z@}
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\setlength{\abovecaptionskip}{\@agentsabovecaptionskip}
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\setlength{\belowcaptionskip}{\@agentsbelowcaptionskip}
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% swap above/belowcaptionskip lengths for tables
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\renewenvironment{table}
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{\setlength{\abovecaptionskip}{\@agentsbelowcaptionskip}%
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\setlength{\belowcaptionskip}{\@agentsabovecaptionskip}%
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\@float{table}}
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{\end@float}
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% footnote formatting
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\setlength{\footnotesep }{6.65\p@}
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\setlength{\skip\footins}{9\p@ \@plus 4\p@ \@minus 2\p@}
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\renewcommand{\footnoterule}{\kern-3\p@ \hrule width 12pc \kern 2.6\p@}
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\setcounter{footnote}{0}
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% paragraph formatting
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\setlength{\parindent}{\z@}
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\setlength{\parskip }{5.5\p@}
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% list formatting
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\setlength{\topsep }{4\p@ \@plus 1\p@ \@minus 2\p@}
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\setlength{\partopsep }{1\p@ \@plus 0.5\p@ \@minus 0.5\p@}
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\setlength{\itemsep }{2\p@ \@plus 1\p@ \@minus 0.5\p@}
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\setlength{\parsep }{2\p@ \@plus 1\p@ \@minus 0.5\p@}
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\setlength{\leftmargin }{3pc}
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\setlength{\leftmargini }{\leftmargin}
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\setlength{\leftmarginii }{2em}
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\setlength{\leftmarginiii}{1.5em}
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\setlength{\leftmarginiv }{1.0em}
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\setlength{\leftmarginv }{0.5em}
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\def\@listi {\leftmargin\leftmargini}
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\def\@listii {\leftmargin\leftmarginii
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\labelwidth\leftmarginii
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\advance\labelwidth-\labelsep
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\topsep 2\p@ \@plus 1\p@ \@minus 0.5\p@
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\parsep 1\p@ \@plus 0.5\p@ \@minus 0.5\p@
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\itemsep \parsep}
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\def\@listiii{\leftmargin\leftmarginiii
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\labelwidth\leftmarginiii
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\advance\labelwidth-\labelsep
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\topsep 1\p@ \@plus 0.5\p@ \@minus 0.5\p@
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\parsep \z@
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\partopsep 0.5\p@ \@plus 0\p@ \@minus 0.5\p@
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\itemsep \topsep}
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\def\@listiv {\leftmargin\leftmarginiv
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\labelwidth\leftmarginiv
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\advance\labelwidth-\labelsep}
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\def\@listv {\leftmargin\leftmarginv
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\labelwidth\leftmarginv
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\advance\labelwidth-\labelsep}
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\def\@listvi {\leftmargin\leftmarginvi
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\labelwidth\leftmarginvi
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\advance\labelwidth-\labelsep}
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% create title
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\providecommand{\maketitle}{}
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\renewcommand{\maketitle}{%
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\par
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\begingroup
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\renewcommand{\thefootnote}{\fnsymbol{footnote}}
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% for perfect author name centering
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\renewcommand{\@makefnmark}{\hbox to \z@{$^{\@thefnmark}$\hss}}
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% The footnote-mark was overlapping the footnote-text,
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% added the following to fix this problem
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\long\def\@makefntext##1{%
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\parindent 1em\noindent
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\hbox to 1.8em{\hss $\m@th ^{\@thefnmark}$}##1
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}
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\thispagestyle{empty}
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\@maketitle
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\@thanks
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\@notice
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\endgroup
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\let\maketitle\relax
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\let\thanks\relax
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}
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% rules for title box at top of first page (modified for agents4science style)
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\newcommand{\@toptitlebar}{
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\hrule height 2\p@
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\vskip 0.2in
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\vskip -\parskip%
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}
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\newcommand{\@bottomtitlebar}{
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\vskip 0.2in
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\vskip -\parskip
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\hrule height 2\p@
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\vskip 0.09in%
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}
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% create title (includes both anonymized and non-anonymized versions)
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\providecommand{\@maketitle}{}
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\renewcommand{\@maketitle}{%
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\vbox{%
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\hsize\textwidth
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\linewidth\hsize
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\vskip 0.1in
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\@toptitlebar
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\centering
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{\LARGE\bf \@title\par}
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\@bottomtitlebar
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\if@anonymous
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\begin{tabular}[t]{c}\bf\rule{\z@}{24\p@}
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Anonymous Author(s) \\
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Affiliation \\
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Address \\
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\texttt{email} \\
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\end{tabular}%
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\else
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\def\And{%
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\end{tabular}\hfil\linebreak[0]\hfil%
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\begin{tabular}[t]{c}\bf\rule{\z@}{24\p@}\ignorespaces%
|
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295
|
+
}
|
|
296
|
+
\def\AND{%
|
|
297
|
+
\end{tabular}\hfil\linebreak[4]\hfil%
|
|
298
|
+
\begin{tabular}[t]{c}\bf\rule{\z@}{24\p@}\ignorespaces%
|
|
299
|
+
}
|
|
300
|
+
\begin{tabular}[t]{c}\bf\rule{\z@}{24\p@}\@author\end{tabular}%
|
|
301
|
+
\fi
|
|
302
|
+
\vskip 0.3in \@minus 0.1in
|
|
303
|
+
}
|
|
304
|
+
}
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305
|
+
|
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306
|
+
% add conference notice to bottom of first page
|
|
307
|
+
\newcommand{\ftype@noticebox}{8}
|
|
308
|
+
\newcommand{\@notice}{%
|
|
309
|
+
% give a bit of extra room back to authors on first page
|
|
310
|
+
\enlargethispage{2\baselineskip}%
|
|
311
|
+
\@float{noticebox}[b]%
|
|
312
|
+
\footnotesize\@noticestring%
|
|
313
|
+
\end@float%
|
|
314
|
+
}
|
|
315
|
+
|
|
316
|
+
% abstract styling
|
|
317
|
+
\renewenvironment{abstract}%
|
|
318
|
+
{%
|
|
319
|
+
\vskip 0.075in%
|
|
320
|
+
\centerline%
|
|
321
|
+
{\large\bf Abstract}%
|
|
322
|
+
\vspace{0.5ex}%
|
|
323
|
+
\begin{quote}%
|
|
324
|
+
}
|
|
325
|
+
{
|
|
326
|
+
\par%
|
|
327
|
+
\end{quote}%
|
|
328
|
+
\vskip 1ex%
|
|
329
|
+
}
|
|
330
|
+
|
|
331
|
+
% For the paper checklist
|
|
332
|
+
\newcommand{\answerYes}[1][]{\textcolor{blue}{[Yes] #1}}
|
|
333
|
+
\newcommand{\answerNo}[1][]{\textcolor{orange}{[No] #1}}
|
|
334
|
+
\newcommand{\answerNA}[1][]{\textcolor{gray}{[NA] #1}}
|
|
335
|
+
\newcommand{\answerTODO}[1][]{\textcolor{red}{\bf [TODO]}}
|
|
336
|
+
\newcommand{\justificationTODO}[1][]{\textcolor{red}{\bf [TODO]}}
|
|
337
|
+
|
|
338
|
+
\newcommand{\involvementA}[1][]{\textcolor{blue}{\bf [A] #1}}
|
|
339
|
+
\newcommand{\involvementB}[1][]{\textcolor{blue}{\bf [B] #1}}
|
|
340
|
+
\newcommand{\involvementC}[1][]{\textcolor{blue}{\bf [C] #1}}
|
|
341
|
+
\newcommand{\involvementD}[1][]{\textcolor{blue}{\bf [D] #1}}
|
|
342
|
+
\newcommand{\involvementNA}[1][]{\textcolor{gray}{\bf [NA] #1}}
|
|
343
|
+
\newcommand{\involvmentTODO}[1][]{\textcolor{red}{\bf [TODO]}}
|
|
344
|
+
|
|
345
|
+
% handle tweaks for camera-ready copy vs. submission copy
|
|
346
|
+
\if@preprint
|
|
347
|
+
\newcommand{\@noticestring}{%
|
|
348
|
+
Preprint.%
|
|
349
|
+
}
|
|
350
|
+
\else
|
|
351
|
+
\if@agentsfinal
|
|
352
|
+
\newcommand{\@noticestring}{
|
|
353
|
+
\@trackname
|
|
354
|
+
}
|
|
355
|
+
\else
|
|
356
|
+
\newcommand{\@noticestring}{%
|
|
357
|
+
Submitted to \@agentsordinal\/ Open Conference on AI Agents for Science
|
|
358
|
+
(agents4science \@agentsyear). Do not distribute.%
|
|
359
|
+
}
|
|
360
|
+
|
|
361
|
+
% hide the acknowledgements
|
|
362
|
+
\NewEnviron{hide}{}
|
|
363
|
+
\let\ack\hide
|
|
364
|
+
\let\endack\endhide
|
|
365
|
+
|
|
366
|
+
% line numbers for submission
|
|
367
|
+
\RequirePackage{lineno}
|
|
368
|
+
\linenumbers
|
|
369
|
+
|
|
370
|
+
% fix incompatibilities between lineno and amsmath, if required, by
|
|
371
|
+
% transparently wrapping linenomath environments around amsmath
|
|
372
|
+
% environments
|
|
373
|
+
\AtBeginDocument{%
|
|
374
|
+
\@ifpackageloaded{amsmath}{%
|
|
375
|
+
\newcommand*\patchAmsMathEnvironmentForLineno[1]{%
|
|
376
|
+
\expandafter\let\csname old#1\expandafter\endcsname\csname #1\endcsname
|
|
377
|
+
\expandafter\let\csname oldend#1\expandafter\endcsname\csname end#1\endcsname
|
|
378
|
+
\renewenvironment{#1}%
|
|
379
|
+
{\linenomath\csname old#1\endcsname}%
|
|
380
|
+
{\csname oldend#1\endcsname\endlinenomath}%
|
|
381
|
+
}%
|
|
382
|
+
\newcommand*\patchBothAmsMathEnvironmentsForLineno[1]{%
|
|
383
|
+
\patchAmsMathEnvironmentForLineno{#1}%
|
|
384
|
+
\patchAmsMathEnvironmentForLineno{#1*}%
|
|
385
|
+
}%
|
|
386
|
+
\patchBothAmsMathEnvironmentsForLineno{equation}%
|
|
387
|
+
\patchBothAmsMathEnvironmentsForLineno{align}%
|
|
388
|
+
\patchBothAmsMathEnvironmentsForLineno{flalign}%
|
|
389
|
+
\patchBothAmsMathEnvironmentsForLineno{alignat}%
|
|
390
|
+
\patchBothAmsMathEnvironmentsForLineno{gather}%
|
|
391
|
+
\patchBothAmsMathEnvironmentsForLineno{multline}%
|
|
392
|
+
}
|
|
393
|
+
{}
|
|
394
|
+
}
|
|
395
|
+
\fi
|
|
396
|
+
\fi
|
|
397
|
+
|
|
398
|
+
\endinput
|