XspecT 0.5.2__py3-none-any.whl → 0.5.3__py3-none-any.whl

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Files changed (9) hide show
  1. xspect/main.py +3 -1
  2. xspect/ncbi.py +3 -2
  3. xspect/web.py +3 -1
  4. {xspect-0.5.2.dist-info → xspect-0.5.3.dist-info}/METADATA +1 -1
  5. {xspect-0.5.2.dist-info → xspect-0.5.3.dist-info}/RECORD +9 -9
  6. {xspect-0.5.2.dist-info → xspect-0.5.3.dist-info}/WHEEL +0 -0
  7. {xspect-0.5.2.dist-info → xspect-0.5.3.dist-info}/entry_points.txt +0 -0
  8. {xspect-0.5.2.dist-info → xspect-0.5.3.dist-info}/licenses/LICENSE +0 -0
  9. {xspect-0.5.2.dist-info → xspect-0.5.3.dist-info}/top_level.txt +0 -0
xspect/main.py CHANGED
@@ -49,7 +49,9 @@ def models():
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  def download():
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  """Download models."""
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  click.echo("Downloading models, this may take a while...")
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- download_test_models("http://assets.adrianromberg.com/ake/xspect-models.zip")
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+ download_test_models(
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+ "https://assets.adrianromberg.com/science/xspect-models-07-08-2025.zip"
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+ )
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  @models.command(
xspect/ncbi.py CHANGED
@@ -221,6 +221,7 @@ class NCBIHandler:
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  """
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  endpoint = (
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  f"/genome/taxon/{taxon_id}/dataset_report?"
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+ f"filters.tax_exact_match=false&"
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  f"filters.assembly_source={assembly_source.value}&"
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  f"filters.exclude_atypical={exclude_atypical}&"
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  f"filters.exclude_paired_reports={exclude_paired_reports}&"
@@ -228,9 +229,9 @@ class NCBIHandler:
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  f"page_size={count * 2}&" # to avoid having less than count if n50 or ANI is not met
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  )
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  endpoint += (
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- "&filters.reference_only=true"
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+ "filters.reference_only=true&"
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  if assembly_level == AssemblyLevel.REFERENCE
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- else f"&filters.assembly_level={assembly_level.value}"
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+ else f"filters.assembly_level={assembly_level.value}"
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  )
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  response = self._make_request(endpoint)
xspect/web.py CHANGED
@@ -31,7 +31,9 @@ def root():
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  @router.get("/download-filters")
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  def download_filters():
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  """Download filters."""
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- download_test_models("http://assets.adrianromberg.com/xspect-models.zip")
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+ download_test_models(
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+ "https://assets.adrianromberg.com/science/xspect-models-07-08-2025.zip"
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+ )
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  @router.get("/classification-result")
{xspect-0.5.2.dist-info → xspect-0.5.3.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: XspecT
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- Version: 0.5.2
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+ Version: 0.5.3
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  Summary: Tool to monitor and characterize pathogens using Bloom filters.
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  License: MIT License
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{xspect-0.5.2.dist-info → xspect-0.5.3.dist-info}/RECORD RENAMED
@@ -4,11 +4,11 @@ xspect/definitions.py,sha256=FpdY1lzWG8mOLUIvL6YVCJX_jV_qdRSItk2yoodCQMg,2730
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  xspect/download_models.py,sha256=VALcnowzkUpR-OAvgB5BUdEq9WnyNbli0CxH3OT40Rc,1121
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  xspect/file_io.py,sha256=Y9BX5O2Ni-EEhWxq2Nh0zn0mzWfai-6s5f6ASE83eUA,8116
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  xspect/filter_sequences.py,sha256=LOmhvK7SmUVpx5zsrCSySDFB1n6wbemBKysK34b4N-s,4574
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- xspect/main.py,sha256=4bdYe6d4FS6d6Pcka5FJ7z3m1Y3OIEy23C9OvnZSK_c,13058
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+ xspect/main.py,sha256=Dt4ji-NgAUoR5DCcVXFxT0ZJSKgw7DJG8of3U9R6THw,13088
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  xspect/model_management.py,sha256=KhWL_TtbqZNIM8sakm_QPZAJMFgAFUwConqYKM7ekMk,5290
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- xspect/ncbi.py,sha256=jooAgpdL2ZA_lFxvAIvdZF7obtfVjGm28FfJcngb2mY,11659
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+ xspect/ncbi.py,sha256=VRbFvtfGR4WTsc3buZE9UCabE3OJUTRphDRY20g63-E,11704
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  xspect/train.py,sha256=jxjK4OqzTywmd5KGPou9A-doH8Nwhlv_xF4X7M6X_jI,11588
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- xspect/web.py,sha256=yac1rJIOhwp1fUio-wqP1_oBRlPp1_S-gYUkp77ptYE,6915
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+ xspect/web.py,sha256=XD5G232DvGxVzX56-cWgAkss7m2dxk8t7-7WSuNXCIA,6949
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  xspect/mlst_feature/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  xspect/mlst_feature/mlst_helper.py,sha256=MsBzMtqz2KW_YnLYOqfYdFTPkx2gC2T8chY9E_2JgLU,8236
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  xspect/mlst_feature/pub_mlst_handler.py,sha256=t84obSvp0FUccUEsmNBjVxBj42kbzblJo41AYTvHfUk,7686
@@ -78,9 +78,9 @@ xspect/xspect-web/src/components/ui/switch.tsx,sha256=uIqRXtd41ba0eusIEUWVyYZv82
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  xspect/xspect-web/src/components/ui/table.tsx,sha256=M2-TIHKwPFWuXrwysSufdQRSMJT-K9jPzGOokfU6PXo,2463
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  xspect/xspect-web/src/components/ui/tabs.tsx,sha256=BImHKcdDCtrS3CCV1AGgn8qg0b65RB5P-QdH49IAhx0,1955
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  xspect/xspect-web/src/lib/utils.ts,sha256=66ibdQiEHKftZBq1OMLmOKqWma1BkO-O60rc1IQYwLE,165
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- xspect-0.5.2.dist-info/licenses/LICENSE,sha256=bhBGDKIRUVwYIHGOGO5hshzuVHyqFJajvSOA3XXOLKI,1094
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- xspect-0.5.2.dist-info/METADATA,sha256=WozekxLNxhznVZOwOQC2by8u3Fq6ARcSSjfxVb3RbC0,4569
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- xspect-0.5.2.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- xspect-0.5.2.dist-info/entry_points.txt,sha256=L7qliX3pIuwupQxpuOSsrBJCSHYPOPNEzH8KZKQGGUw,43
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- xspect-0.5.2.dist-info/top_level.txt,sha256=hdoa4cnBv6OVzpyhMmyxpJxEydH5n2lDciy8urc1paE,7
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- xspect-0.5.2.dist-info/RECORD,,
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+ xspect-0.5.3.dist-info/licenses/LICENSE,sha256=bhBGDKIRUVwYIHGOGO5hshzuVHyqFJajvSOA3XXOLKI,1094
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+ xspect-0.5.3.dist-info/METADATA,sha256=T9yTZsMadZgZXFx3Uezd75GGg9iTnELTwcAeiX5G51k,4569
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+ xspect-0.5.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ xspect-0.5.3.dist-info/entry_points.txt,sha256=L7qliX3pIuwupQxpuOSsrBJCSHYPOPNEzH8KZKQGGUw,43
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+ xspect-0.5.3.dist-info/top_level.txt,sha256=hdoa4cnBv6OVzpyhMmyxpJxEydH5n2lDciy8urc1paE,7
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+ xspect-0.5.3.dist-info/RECORD,,
{xspect-0.5.2.dist-info → xspect-0.5.3.dist-info}/WHEEL RENAMED
File without changes