XspecT 0.2.7__py3-none-any.whl → 0.4.1__py3-none-any.whl

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Files changed (30) hide show
  1. xspect/definitions.py +0 -7
  2. xspect/download_models.py +25 -24
  3. xspect/fastapi.py +23 -26
  4. xspect/file_io.py +86 -2
  5. xspect/main.py +360 -98
  6. xspect/mlst_feature/mlst_helper.py +4 -6
  7. xspect/model_management.py +7 -15
  8. xspect/models/probabilistic_filter_model.py +16 -5
  9. xspect/models/probabilistic_filter_svm_model.py +33 -18
  10. xspect/models/probabilistic_single_filter_model.py +8 -1
  11. xspect/models/result.py +32 -66
  12. xspect/ncbi.py +265 -0
  13. xspect/train.py +258 -242
  14. {xspect-0.2.7.dist-info → xspect-0.4.1.dist-info}/METADATA +15 -21
  15. xspect-0.4.1.dist-info/RECORD +24 -0
  16. {xspect-0.2.7.dist-info → xspect-0.4.1.dist-info}/WHEEL +1 -1
  17. xspect/pipeline.py +0 -201
  18. xspect/run.py +0 -38
  19. xspect/train_filter/__init__.py +0 -0
  20. xspect/train_filter/create_svm.py +0 -45
  21. xspect/train_filter/extract_and_concatenate.py +0 -124
  22. xspect/train_filter/ncbi_api/__init__.py +0 -0
  23. xspect/train_filter/ncbi_api/download_assemblies.py +0 -31
  24. xspect/train_filter/ncbi_api/ncbi_assembly_metadata.py +0 -110
  25. xspect/train_filter/ncbi_api/ncbi_children_tree.py +0 -53
  26. xspect/train_filter/ncbi_api/ncbi_taxon_metadata.py +0 -55
  27. xspect-0.2.7.dist-info/RECORD +0 -33
  28. {xspect-0.2.7.dist-info → xspect-0.4.1.dist-info}/entry_points.txt +0 -0
  29. {xspect-0.2.7.dist-info → xspect-0.4.1.dist-info/licenses}/LICENSE +0 -0
  30. {xspect-0.2.7.dist-info → xspect-0.4.1.dist-info}/top_level.txt +0 -0
xspect-0.2.7.dist-info/RECORD DELETED
@@ -1,33 +0,0 @@
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- xspect/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- xspect/definitions.py,sha256=Z6RiCOQnsA_i8DPIq-7SUhrKo7KYf1Azp36UZZpcOX4,1419
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- xspect/download_models.py,sha256=lml8pSyM0pF-MxghgSRC9noDT4pkUcBZraaTTImVfbA,739
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- xspect/fastapi.py,sha256=FDiGXJmLEeTLD83Hem8yV5aoPJ-GhSG5WmDIQRAA_w4,3257
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- xspect/file_io.py,sha256=zKhl6Fd9KZAYiD8YgIyje5TbDYk5lxMp1WUrNkGSBo8,2779
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- xspect/main.py,sha256=3HqmnMowjkLNwhaZWtY4aeJCyCyT6h_nZWzYIunHfKg,5325
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- xspect/model_management.py,sha256=xF-wjVNJbXYv64RajsIcpLfZUvicDyalJEdSeCx3nQI,3542
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- xspect/pipeline.py,sha256=kgxClqnm-5BaZ8BlcCYDCKhBpavt5vIONs8aBdEnjuE,7217
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- xspect/run.py,sha256=pastcT-IFNLkWQvl0BL-h1mPheDK8mrHH-UytZWbyUI,1187
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- xspect/train.py,sha256=wVGhirXyFK5yPWd24Ai35z7iRGiYyO6QR94xZgoWJ6I,9300
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- xspect/mlst_feature/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
12
- xspect/mlst_feature/mlst_helper.py,sha256=cPl-8ZASEef4ElF1dqYFjdmpoeLMOU_lvx-yBEqYlss,5914
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- xspect/mlst_feature/pub_mlst_handler.py,sha256=oss3CkJNt6041p3qnMdOfoX8ZgUfpB93CUim-Yakc9A,5031
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- xspect/models/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- xspect/models/probabilistic_filter_mlst_model.py,sha256=JMc0yBJPo7J9b-GpvhDmzhwWPIKOwatAq0edDgM72PE,11735
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- xspect/models/probabilistic_filter_model.py,sha256=zCn5dcuq5Z4pvmsV9igS0lQ1plUi9-Kky_zRflfrIkI,9659
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- xspect/models/probabilistic_filter_svm_model.py,sha256=uabDrF1_CSuIWf9wWyQAkqjAuRUBzEZLkv3J6YHfJsM,5641
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- xspect/models/probabilistic_single_filter_model.py,sha256=TdGbQp8ylOif7dD13OSWaS-zFNJo8mXOb6BaQ0mcPdo,3810
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- xspect/models/result.py,sha256=_pvWERp-9SHsftyhVnbe05jfOOE6GdENr6_9t-prR-M,4832
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- xspect/train_filter/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
21
- xspect/train_filter/create_svm.py,sha256=w6gq40yHINVfNzLhJfYFykUaNCwpU9AEDcbkUfis3DY,1504
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- xspect/train_filter/extract_and_concatenate.py,sha256=g6iUTlZYoemddHdXzxL-Hq8AtE3va6bFaSBxiKd2gHE,4838
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- xspect/train_filter/ncbi_api/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- xspect/train_filter/ncbi_api/download_assemblies.py,sha256=PTXs22T_fH-_skAemzCfD1uS26qJ3Huw3MdqDciu0v8,1285
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- xspect/train_filter/ncbi_api/ncbi_assembly_metadata.py,sha256=_G5oo281WyLQspI-hYzeWcizK0DKRLiDiL0u9l53NAo,3843
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- xspect/train_filter/ncbi_api/ncbi_children_tree.py,sha256=Tbiu740BTvXvRPBslPp9fSTL3pA3UolMKwrIrNtW8fc,1819
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- xspect/train_filter/ncbi_api/ncbi_taxon_metadata.py,sha256=y0a2RnXsXiIBleMpCM-mYnQSjtsxJ4cjhIXl-Xr5oLA,1866
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- xspect-0.2.7.dist-info/LICENSE,sha256=bhBGDKIRUVwYIHGOGO5hshzuVHyqFJajvSOA3XXOLKI,1094
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- xspect-0.2.7.dist-info/METADATA,sha256=mzC1AwcjQzSJl1N0bf1uJWjZEhi4cKI9hI8ye7hIf7Y,4714
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- xspect-0.2.7.dist-info/WHEEL,sha256=52BFRY2Up02UkjOa29eZOS2VxUrpPORXg1pkohGGUS8,91
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- xspect-0.2.7.dist-info/entry_points.txt,sha256=L7qliX3pIuwupQxpuOSsrBJCSHYPOPNEzH8KZKQGGUw,43
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- xspect-0.2.7.dist-info/top_level.txt,sha256=hdoa4cnBv6OVzpyhMmyxpJxEydH5n2lDciy8urc1paE,7
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- xspect-0.2.7.dist-info/RECORD,,