XspecT 0.2.4__py3-none-any.whl → 0.2.5__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Potentially problematic release.
This version of XspecT might be problematic. Click here for more details.
- {XspecT-0.2.4.dist-info → XspecT-0.2.5.dist-info}/METADATA +1 -1
- {XspecT-0.2.4.dist-info → XspecT-0.2.5.dist-info}/RECORD +7 -7
- xspect/models/probabilistic_filter_svm_model.py +2 -1
- {XspecT-0.2.4.dist-info → XspecT-0.2.5.dist-info}/LICENSE +0 -0
- {XspecT-0.2.4.dist-info → XspecT-0.2.5.dist-info}/WHEEL +0 -0
- {XspecT-0.2.4.dist-info → XspecT-0.2.5.dist-info}/entry_points.txt +0 -0
- {XspecT-0.2.4.dist-info → XspecT-0.2.5.dist-info}/top_level.txt +0 -0
|
@@ -10,7 +10,7 @@ xspect/run.py,sha256=OJ7pCFqva3AhIYklKjVnqWGooVRO7S3b56kIAy-xabY,1189
|
|
|
10
10
|
xspect/train.py,sha256=khC1lldqfr4NvzLUiSJjSlh7DBG1ePielvQMiB29Hl8,10399
|
|
11
11
|
xspect/models/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
12
12
|
xspect/models/probabilistic_filter_model.py,sha256=ImyNRzR7jf2CBPGI65ItG0_eYmrQjo9soQYlsM0r-P0,9829
|
|
13
|
-
xspect/models/probabilistic_filter_svm_model.py,sha256=
|
|
13
|
+
xspect/models/probabilistic_filter_svm_model.py,sha256=Z_aAigE_fC_gm80hRfxvROHGs6LuBqZnATHPpAkQGQE,5466
|
|
14
14
|
xspect/models/probabilistic_single_filter_model.py,sha256=nDAd_-_Ci2eH0KOJtf4wA-w63FMq9rGSR1LGiIA-gdw,3884
|
|
15
15
|
xspect/models/result.py,sha256=vHUEFXvbFyB8WmasXp99IrztjwaxH1f9QMFiRUPe40Q,4824
|
|
16
16
|
xspect/train_filter/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
|
|
@@ -22,9 +22,9 @@ xspect/train_filter/ncbi_api/download_assemblies.py,sha256=MB_mxSjCTL05DqIt1WQem
|
|
|
22
22
|
xspect/train_filter/ncbi_api/ncbi_assembly_metadata.py,sha256=puzDIws-yyBAEHwSAIYUM7g8FpLFmvOKh5xH1EsY8ZE,3830
|
|
23
23
|
xspect/train_filter/ncbi_api/ncbi_children_tree.py,sha256=_8puOsnsKp5lsMV2gZY1ijkfD_BZKG9eXZCX09qph5E,1819
|
|
24
24
|
xspect/train_filter/ncbi_api/ncbi_taxon_metadata.py,sha256=O6JDXC4E6AYaf7NPnb34eSJyZhMB8r--bjoVF_ZsEdA,1868
|
|
25
|
-
XspecT-0.2.
|
|
26
|
-
XspecT-0.2.
|
|
27
|
-
XspecT-0.2.
|
|
28
|
-
XspecT-0.2.
|
|
29
|
-
XspecT-0.2.
|
|
30
|
-
XspecT-0.2.
|
|
25
|
+
XspecT-0.2.5.dist-info/LICENSE,sha256=bhBGDKIRUVwYIHGOGO5hshzuVHyqFJajvSOA3XXOLKI,1094
|
|
26
|
+
XspecT-0.2.5.dist-info/METADATA,sha256=NDw2i1MawAjAkybDXzaQfIIGFI4sw86MSlQJ8z6vkWs,4834
|
|
27
|
+
XspecT-0.2.5.dist-info/WHEEL,sha256=cVxcB9AmuTcXqmwrtPhNK88dr7IR_b6qagTj0UvIEbY,91
|
|
28
|
+
XspecT-0.2.5.dist-info/entry_points.txt,sha256=L7qliX3pIuwupQxpuOSsrBJCSHYPOPNEzH8KZKQGGUw,43
|
|
29
|
+
XspecT-0.2.5.dist-info/top_level.txt,sha256=hdoa4cnBv6OVzpyhMmyxpJxEydH5n2lDciy8urc1paE,7
|
|
30
|
+
XspecT-0.2.5.dist-info/RECORD,,
|
|
@@ -107,7 +107,7 @@ class ProbabilisticFilterSVMModel(ProbabilisticFilterModel):
|
|
|
107
107
|
),
|
|
108
108
|
filter_ids: list[str] = None,
|
|
109
109
|
step: int = 1,
|
|
110
|
-
) ->
|
|
110
|
+
) -> ModelResult:
|
|
111
111
|
"""Predict the labels of the sequences"""
|
|
112
112
|
# get scores and format them for the SVM
|
|
113
113
|
res = super().predict(sequence_input, filter_ids, step=step)
|
|
@@ -119,6 +119,7 @@ class ProbabilisticFilterSVMModel(ProbabilisticFilterModel):
|
|
|
119
119
|
self.slug(),
|
|
120
120
|
res.hits,
|
|
121
121
|
res.num_kmers,
|
|
122
|
+
sparse_sampling_step=step,
|
|
122
123
|
prediction=str(svm.predict(svm_scores)[0]),
|
|
123
124
|
)
|
|
124
125
|
|
|
File without changes
|
|
File without changes
|
|
File without changes
|
|
File without changes
|