XspecT 0.2.0__py3-none-any.whl → 0.2.2__py3-none-any.whl

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Files changed (7) hide show
  1. {XspecT-0.2.0.dist-info → XspecT-0.2.2.dist-info}/METADATA +1 -1
  2. {XspecT-0.2.0.dist-info → XspecT-0.2.2.dist-info}/RECORD +7 -7
  3. xspect/fastapi.py +6 -2
  4. {XspecT-0.2.0.dist-info → XspecT-0.2.2.dist-info}/LICENSE +0 -0
  5. {XspecT-0.2.0.dist-info → XspecT-0.2.2.dist-info}/WHEEL +0 -0
  6. {XspecT-0.2.0.dist-info → XspecT-0.2.2.dist-info}/entry_points.txt +0 -0
  7. {XspecT-0.2.0.dist-info → XspecT-0.2.2.dist-info}/top_level.txt +0 -0
{XspecT-0.2.0.dist-info → XspecT-0.2.2.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: XspecT
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- Version: 0.2.0
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+ Version: 0.2.2
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  Summary: Tool to monitor and characterize pathogens using Bloom filters.
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  License: MIT License
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{XspecT-0.2.0.dist-info → XspecT-0.2.2.dist-info}/RECORD RENAMED
@@ -1,7 +1,7 @@
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  xspect/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  xspect/definitions.py,sha256=gg6NvT8ypNzlnJvMMo3nHsyh8DHFFu41lOfnILkRDpE,1215
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  xspect/download_filters.py,sha256=ByE7Oggx-AyJ02Wirk_wcJHNdRDrJMfjwhmUe5tgWbE,741
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- xspect/fastapi.py,sha256=UuUr3eQUL0tCcB2d_ZKMToqreNLSNRKpCKK3-lwAzVo,3208
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+ xspect/fastapi.py,sha256=C8pBBiqM6UdedLZgzfL_YYRuy98aPj8dcw_CLFrtMMc,3260
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  xspect/file_io.py,sha256=zKhl6Fd9KZAYiD8YgIyje5TbDYk5lxMp1WUrNkGSBo8,2779
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  xspect/main.py,sha256=rFoHKBC9UANlZh3TccZAJbOZ6023BnQaGEoPjjJjW0A,3572
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  xspect/model_management.py,sha256=w0aqjLUoixCokyKTYrcN1vih5IoLYLJG9p8aeYdVc8Y,3560
@@ -22,9 +22,9 @@ xspect/train_filter/ncbi_api/download_assemblies.py,sha256=MB_mxSjCTL05DqIt1WQem
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  xspect/train_filter/ncbi_api/ncbi_assembly_metadata.py,sha256=puzDIws-yyBAEHwSAIYUM7g8FpLFmvOKh5xH1EsY8ZE,3830
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  xspect/train_filter/ncbi_api/ncbi_children_tree.py,sha256=_8puOsnsKp5lsMV2gZY1ijkfD_BZKG9eXZCX09qph5E,1819
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  xspect/train_filter/ncbi_api/ncbi_taxon_metadata.py,sha256=O6JDXC4E6AYaf7NPnb34eSJyZhMB8r--bjoVF_ZsEdA,1868
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- XspecT-0.2.0.dist-info/LICENSE,sha256=bhBGDKIRUVwYIHGOGO5hshzuVHyqFJajvSOA3XXOLKI,1094
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- XspecT-0.2.0.dist-info/METADATA,sha256=efT3SkWV55firuZJh1gHCN7061Fxda7teuFLeZHvJQ0,4826
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- XspecT-0.2.0.dist-info/WHEEL,sha256=Mdi9PDNwEZptOjTlUcAth7XJDFtKrHYaQMPulZeBCiQ,91
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- XspecT-0.2.0.dist-info/entry_points.txt,sha256=L7qliX3pIuwupQxpuOSsrBJCSHYPOPNEzH8KZKQGGUw,43
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- XspecT-0.2.0.dist-info/top_level.txt,sha256=hdoa4cnBv6OVzpyhMmyxpJxEydH5n2lDciy8urc1paE,7
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- XspecT-0.2.0.dist-info/RECORD,,
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+ XspecT-0.2.2.dist-info/LICENSE,sha256=bhBGDKIRUVwYIHGOGO5hshzuVHyqFJajvSOA3XXOLKI,1094
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+ XspecT-0.2.2.dist-info/METADATA,sha256=iwBQ-BRc2bfZ3NNSNKbrLkC6hz5i6rAVjRRZBDjZiJ8,4826
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+ XspecT-0.2.2.dist-info/WHEEL,sha256=Mdi9PDNwEZptOjTlUcAth7XJDFtKrHYaQMPulZeBCiQ,91
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+ XspecT-0.2.2.dist-info/entry_points.txt,sha256=L7qliX3pIuwupQxpuOSsrBJCSHYPOPNEzH8KZKQGGUw,43
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+ XspecT-0.2.2.dist-info/top_level.txt,sha256=hdoa4cnBv6OVzpyhMmyxpJxEydH5n2lDciy8urc1paE,7
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+ XspecT-0.2.2.dist-info/RECORD,,
xspect/fastapi.py CHANGED
@@ -27,12 +27,16 @@ def classify(genus: str, file: str, meta: bool = False, step: int = 500):
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  path = get_xspect_upload_path() / file
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  pipeline = Pipeline(genus + " classification", "Test Author", "test@example.com")
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- species_execution = ModelExecution(genus + "-species", sparse_sampling_step=step)
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+ species_execution = ModelExecution(
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+ genus.lower() + "-species", sparse_sampling_step=step
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+ )
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  if meta:
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  species_filtering_step = PipelineStep(
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  StepType.FILTERING, genus, 0.7, species_execution
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  )
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- genus_execution = ModelExecution(genus + "-genus", sparse_sampling_step=step)
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+ genus_execution = ModelExecution(
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+ genus.lower() + "-genus", sparse_sampling_step=step
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+ )
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  genus_execution.add_pipeline_step(species_filtering_step)
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  pipeline.add_pipeline_step(genus_execution)
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  else:
{XspecT-0.2.0.dist-info → XspecT-0.2.2.dist-info}/WHEEL RENAMED
File without changes