UncountablePythonSDK 0.0.7__py3-none-any.whl → 0.0.9__py3-none-any.whl

{UncountablePythonSDK-0.0.7.dist-info → UncountablePythonSDK-0.0.9.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: UncountablePythonSDK
-Version: 0.0.7
+Version: 0.0.9
 Summary: Uncountable SDK
 Project-URL: Homepage, https://github.com/uncountableinc/uncountable-python-sdk
 Project-URL: Repository, https://github.com/uncountableinc/uncountable-python-sdk.git
@@ -16,7 +16,9 @@ Classifier: Topic :: Utilities
 Classifier: Typing :: Typed
 Requires-Python: >=3.11
 Description-Content-Type: text/markdown
-Requires-Dist: requests >=2.31.0
+Requires-Dist: requests ==2.31.0
+Requires-Dist: SQLAlchemy ==2.0.29
+Requires-Dist: APScheduler ==3.10.4
 Provides-Extra: test
 Requires-Dist: mypy >=1.8.1 ; extra == 'test'
 Requires-Dist: ruff >=0.2.1 ; extra == 'test'

UncountablePythonSDK-0.0.9.dist-info/RECORD

@@ -0,0 +1,145 @@
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+uncountable/types/api/recipes/get_recipe_output_metadata.py,sha256=L9s2ykPP4pd02Pc98LDisY8bgV8CToS6t6fXKTWqGRw,1464
+uncountable/types/api/recipes/get_recipes_data.py,sha256=dOKokz6rJp3AiqNrF8rAZFlmJSs3ejdNIJhwKw0Utr0,5317
+uncountable/types/api/recipes/set_recipe_inputs.py,sha256=sHEwPocBucWRnnoX7nbNaFqdflxFkqdjuVydNezqluY,1326
+uncountable/types/api/recipes/set_recipe_outputs.py,sha256=QYq39TNchQ80ET1C77OE9fwhbu_HmIoEDmrQJHkkCu0,1609
+UncountablePythonSDK-0.0.9.dist-info/METADATA,sha256=KWYgT-7XZt_BwkAVhAQZ5cCqKl2WWddal0a6Va16YmI,1196
+UncountablePythonSDK-0.0.9.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+UncountablePythonSDK-0.0.9.dist-info/top_level.txt,sha256=8ga1DCSWt4Uc_XJ5cR0QrDQuyoeo2uoSzaAJdQT2KBo,36
+UncountablePythonSDK-0.0.9.dist-info/RECORD,,

pkgs/argument_parser/argument_parser.py

@@ -407,5 +407,5 @@ class CachedParser(typing.Generic[T]):
             return self.parse_storage(yaml.safe_load(data_in))
 
     def parse_yaml_resource(self, package: resources.Package, resource: str) -> T:
-        raw_data = resources.read_text(package, resource)
-        return self.parse_storage(yaml.safe_load(raw_data))
+        with resources.open_text(package, resource) as fp:
+            return self.parse_storage(yaml.safe_load(fp))

pkgs/serialization/missing_sentry.py

@@ -26,5 +26,5 @@ MISSING_SENTRY = MissingSentryType()
 MissingType = Union[MissingSentryType, ClassT]
 
 
-def coalesce_missing_sentry(value: MissingType[ClassT]) -> ClassT | None:
+def coalesce_missing_sentry(value: MissingType[ClassT]) -> Optional[ClassT]:
     return None if isinstance(value, MissingSentryType) else value

pkgs/serialization_util/serialization_helpers.py

@@ -1,4 +1,5 @@
 import datetime
+import enum
 from decimal import Decimal
 from typing import (
     TYPE_CHECKING,
@@ -33,6 +34,8 @@ else:
 def key_convert_to_camelcase(o: Any) -> Any:
     if isinstance(o, OpaqueKey):
         return o
+    if isinstance(o, enum.Enum):
+        return o.value
     if isinstance(o, str):
         return snake_to_camel_case(o)
     return o

pkgs/type_spec/emit_open_api.py

@@ -141,6 +141,18 @@ def _serialize_global_context(ctx: EmitOpenAPIGlobalContext) -> str:
     return yaml.dump(oa_root, sort_keys=False)
 
 
+def _emit_endpoint_parameters(typ: OpenAPIType | None) -> dict[str, list[dict[str, str]]]:
+    if not isinstance(typ, OpenAPIObjectType):
+        return {}
+
+    return {
+        "parameters": [
+            {"$ref": f"#/components/schema/Arguments/{prop_name}"}
+            for prop_name in typ.properties
+        ]
+    }
+
+
 def _emit_namespace(
     gctx: EmitOpenAPIGlobalContext,
     ctx: EmitOpenAPIContext,
@@ -159,23 +171,28 @@ def _emit_namespace(
     if ctx.endpoint is not None:
         endpoint = ctx.endpoint
 
+        argument_type = ctx.types.get("Arguments")
         oa_endpoint = dict()
-        oa_endpoint[endpoint.method] = {
-            "tags": endpoint.tags,
-            "summary": endpoint.summary,
-            "description": endpoint.description,
-            "parameters": {"$ref": "#/components/schema/Arguments"},
-            "responses": {
-                "200": {
-                    "description": "OK",
-                    "content": {
-                        "application/json": {
-                            "schema": {"$ref": "#/components/schema/Data"}
-                        }
-                    },
-                }
-            },
-        }
+        oa_endpoint[endpoint.method] = (
+            {
+                "tags": endpoint.tags,
+                "summary": endpoint.summary,
+                "description": endpoint.description,
+            }
+            | _emit_endpoint_parameters(argument_type)
+            | {
+                "responses": {
+                    "200": {
+                        "description": "OK",
+                        "content": {
+                            "application/json": {
+                                "schema": {"$ref": "#/components/schema/Data"}
+                            }
+                        },
+                    }
+                },
+            }
+        )
         oa_components["endpoint"] = oa_endpoint
 
     types = ctx.types
@@ -460,5 +477,5 @@ def open_api_type(
     ctx.namespaces.add(stype.namespace)
     # external namespace resolution
     return OpenAPIRefType(
-        source=f"{resolve_namespace_ref(ctx, stype.namespace, config=config)}/{stype.name}"
+        source=f"{resolve_namespace_ref(source_path=ctx.namespace.path, ref_path=stype.namespace.path, ref='/components/schema')}/{stype.name}"
     )

pkgs/type_spec/emit_open_api_util.py

@@ -9,7 +9,6 @@ from dataclasses import dataclass, field
 from typing import TypeAlias
 
 from . import builder
-from .config import OpenAPIConfig
 from .open_api_util import OpenAPIType
 
 MODIFY_NOTICE = "# DO NOT MODIFY -- This file is generated by type_spec"
@@ -75,12 +74,8 @@ class EmitOpenAPIContext:
 
 
 def resolve_namespace_ref(
-    ctx: EmitOpenAPIContext,
-    namespace: builder.SpecNamespace,
-    *,
-    config: OpenAPIConfig,
+    *, source_path: list[str], ref_path: list[str], ref: str
 ) -> str:
-    # TODO: Handle namespaces not in root directory
-    if len(ctx.namespace.path) == 1:
-        return f"{namespace.name}.yaml#/components/schema"
-    return f"{config.static_url_path}/common/{namespace.name}.yaml#/components/schema"
+    to_root = "/".join(".." for _ in source_path)
+    location = "/".join(ref_path)
+    return f"{to_root}/common/{location}.yaml#{ref}"

pkgs/type_spec/emit_python.py

@@ -335,14 +335,15 @@ def _emit_namespace(ctx: Context, namespace: builder.SpecNamespace) -> None:
 
 
 def _validate_supports_handler_generation(
-    stype: builder.SpecTypeDefn, name: str
+    stype: builder.SpecTypeDefn, name: str, supports_inheritance: bool = False
 ) -> builder.SpecTypeDefnObject:
     assert isinstance(
         stype, builder.SpecTypeDefnObject
     ), f"External api {name} must be an object"
-    assert (
-        stype.base is None or stype.base.is_base
-    ), f"Inheritance not supporterd in external api {name}"
+    if not supports_inheritance:
+        assert (
+            stype.base is None or stype.base.is_base
+        ), f"Inheritance not supported in external api {name}"
     return stype
 
 
@@ -359,7 +360,9 @@ def _emit_endpoint_invocation_function(
     data_type = namespace.types["Data"]
 
     arguments_type = _validate_supports_handler_generation(arguments_type, "arguments")
-    data_type = _validate_supports_handler_generation(data_type, "response")
+    data_type = _validate_supports_handler_generation(
+        data_type, "response", supports_inheritance=True
+    )
 
     endpoint_method_stype = builder.SpecTypeDefnObject(
         namespace=arguments_type.namespace, name=ENDPOINT_METHOD

pkgs/type_spec/open_api_util.py

@@ -13,9 +13,10 @@ class OpenAPIType(ABC):
         self.nullable = nullable
 
     @abstractmethod
-    def asdict(self) -> dict[str, object]: ...
+    def asdict(self) -> dict[str, object]:
+        pass
 
-    def asarguments(self) -> list[dict[str, object]]:
+    def asarguments(self) -> dict[str, dict[str, object]]:
         raise UnsupportedOperation
 
     def add_addl_info(self, emitted: dict[str, object]) -> dict[str, object]:
@@ -147,8 +148,8 @@ class OpenAPIFreeFormObjectType(OpenAPIType):
     def asdict(self) -> dict[str, object]:
         return self.add_addl_info({"type": "object"})
 
-    def asarguments(self) -> list[dict[str, object]]:
-        return []
+    def asarguments(self) -> dict[str, dict[str, object]]:
+        return {}
 
 
 class OpenAPIObjectType(OpenAPIType):
@@ -185,17 +186,17 @@ class OpenAPIObjectType(OpenAPIType):
             },
         })
 
-    def asarguments(self) -> list[dict[str, object]]:
-        argument_types: list[dict[str, object]] = []
+    def asarguments(self) -> dict[str, dict[str, object]]:
+        argument_types: dict[str, dict[str, object]] = {}
         for property_name, property_type in self.properties.items():
             desc = self.property_desc.get(property_name)
-            argument_types.append({
+            argument_types[property_name] = {
                 "name": property_name,
                 "in": "query",
                 "schema": property_type.asdict(),
                 "required": not property_type.nullable,
                 "description": desc or "",
-            })
+            }
         return argument_types
 
 
@@ -219,11 +220,11 @@ class OpenAPIUnionType(OpenAPIType):
         # TODO: use parents description and nullable
         return {"oneOf": [base_type.asdict() for base_type in self.base_types]}
 
-    def asarguments(self) -> list[dict[str, object]]:
+    def asarguments(self) -> dict[str, dict[str, object]]:
         # TODO handle inheritence (allOf and refs); need to inline here...
         # for now skip this endpoint
 
-        return []
+        return {}
 
 
 class OpenAPIIntersectionType(OpenAPIType):
@@ -246,8 +247,8 @@ class OpenAPIIntersectionType(OpenAPIType):
         # TODO: use parents description and nullable
         return {"allOf": [base_type.asdict() for base_type in self.base_types]}
 
-    def asarguments(self) -> list[dict[str, object]]:
+    def asarguments(self) -> dict[str, dict[str, object]]:
         # TODO handle inheritence (allOf and refs); need to inline here...
         # for now skip this endpoint
 
-        return []
+        return {}

type_spec/external/api/entity/create_entities.yaml

@@ -16,7 +16,7 @@ Arguments:
     type: Object
     properties:
         definition_id:
-            type: Integer
+            type: ObjectId
             desc: "Definition id for the entities to create"
         entity_type:
             type: Union<Literal<entity.EntityType.lab_request>, Literal<entity.EntityType.approval>, Literal<entity.EntityType.custom_entity>, Literal<entity.EntityType.task>, Literal<entity.EntityType.project>>

type_spec/external/api/entity/create_entity.yaml

@@ -23,7 +23,7 @@ Arguments:
     type: Object
     properties:
         definition_id:
-            type: Integer
+            type: ObjectId
             desc: "Definition id of the entity to create"
         entity_type:
             type: Union<Literal<entity.EntityType.lab_request>, Literal<entity.EntityType.approval>, Literal<entity.EntityType.custom_entity>, Literal<entity.EntityType.task>, Literal<entity.EntityType.project>>

type_spec/external/api/entity/get_entities_data.yaml

@@ -8,45 +8,19 @@ Arguments:
     type: Object
     properties:
         entity_ids:
-            type: List<Integer>
+            type: List<ObjectId>
             desc: "Ids of the entity to retrieve"
         entity_type:
-            type: String
+            type: entity.EntityType
             desc: "The type of the entities requested, e.g. lab_request or approval"
 
-EntityFieldValue:
-    type: Object
-    properties:
-        field_id:
-            type: Integer
-            desc: "A unique identifier of the field"
-        field_ref_name:
-            type: String
-            desc: "A unique identifer string for the field"
-        row_index:
-            type: Optional<Integer>
-            desc: "The index in the table for the field"
-        value:
-            type: JsonValue
-            desc: "The value for the field"
-
-Entity:
-    type: Object
-    properties:
-        id:
-            type: Integer
-            desc: "A unique identifier for the entity.  Used in conjunction with entity type"
-        type:
-            type: String
-            desc: "The type of entity"
-
 EntityDetails:
     type: Object
     properties:
         entity:
-            type: Entity
+            type: entity.Entity
         field_values:
-            type: List<EntityFieldValue>
+            type: List<field_values.FieldRefIdNameValue>
 
 Data:
     type: Object

type_spec/external/api/entity/list_entities.yaml

@@ -8,7 +8,7 @@ Arguments:
     type: Object
     properties:
         entity_type:
-            type: String
+            type: entity.EntityType
             desc: "The type of the entities requested, e.g. lab_request, recipe"
         config_reference:
             type: String
@@ -16,28 +16,18 @@ Arguments:
         attributes?:
             type: Dict<OpaqueKey, JsonValue>
             desc: "Attributes to pass to the configuration for parameterizing filters"
-        offset:
+        offset?:
             type: Optional<Integer>
             desc: "Used for pagination. Pagination is done based on the sorting of the config"
-        limit:
+        limit?:
             type: Optional<Integer>
             desc: "The number of data points to return. If not filled in, it will be set to 100, and cannot be set higher than 100"
 
-Entity:
-    type: Object
-    properties:
-        id:
-            type: Integer
-            desc: "A unique identifier for the entity.  Used in conjunction with entity type"
-        type:
-            type: String
-            desc: "The type of entity"
-
 EntityResult:
     type: Object
     properties:
         entity:
-            type: Entity
+            type: entity.Entity
             desc: "The entity represented by the record"
         column_values:
             type: List<JsonValue>

type_spec/external/api/entity/resolve_entity_ids.yaml

@@ -8,10 +8,10 @@ Arguments:
     type: Object
     properties:
         entity_ids:
-            type: List<Union<String, Integer>>
+            type: List<Union<String, ObjectId>>
             desc: "Ids of the entity to retrieve"
         entity_type:
-            type: String
+            type: entity.EntityType
             desc: "The type of the entities requested"
 
 EntityNames:

type_spec/external/api/entity/set_values.yaml

@@ -5,41 +5,14 @@ $endpoint:
     function: main.site.app.external.entity.set_values.set_values
     desc: "Sets field values for an entity"
 
-EntityFieldValues:
-    type: Object
-    properties:
-        field_ref_name:
-            type: String
-            desc: "A unique identifer string for the field"
-        row_index?:
-            type: Optional<Integer>
-            desc: "The index in the table for the field"
-        value:
-            type: JsonValue
-            desc: "The value for the field"
-
-Entity:
-    type: Object
-    properties:
-        id:
-            type: Integer
-            desc: "A unique identifier for the entity.  Used in conjunction with entity type"
-        type:
-            type: String
-            desc: "The type of entity"
-
 Arguments:
     type: Object
     properties:
         entity:
-            type: Entity
+            type: entity.Entity
         values:
-            type: List<EntityFieldValues>
+            type: List<field_values.ArgumentValueRefName>
 
 Data:
-    type: Object
+    type: response.Response
     properties:
-        status:
-            type: Literal<'ok'>
-            default: "ok"
-            desc: "'ok' indicates the post request was successful"

type_spec/external/api/input_groups/get_input_group_names.yaml

@@ -9,14 +9,14 @@ Arguments:
     type: Object
     properties:
         material_family_id:
-            type: Integer
+            type: ObjectId
             desc: "Required: The Material Family ID to get the input groups from."
 
 SimpleInputGroup:
     type: Object
     properties:
         input_group_id:
-            type: Integer
+            type: ObjectId
             desc: "The unique integer ID of the input group. Used for joining and identification elsewhere"
         name:
             type: String

type_spec/external/api/inputs/create_inputs.yaml

@@ -19,39 +19,26 @@ InputToCreate:
         name:
             type: String
         material_family_ids:
-            type: List<Integer>
+            type: List<ObjectId>
             desc: "The list of material families to add the ingredient to.  This must be non-empty"
         quantity_type:
-            type: Union<Literal<'numeric'>, Literal<'text'>>
+            type: Union<Literal<inputs.IngredientQuantityType.numeric>, Literal<inputs.IngredientQuantityType.text>>
             desc: "The quantity type of the input.  Always numeric for standard inputs"
         type:
-            type: Union<Literal<'ingredient'>, Literal<'process_parameter'>>
+            type: Union<Literal<inputs.IngredientType.ingredient>, Literal<inputs.IngredientType.process_parameter>>
             desc: "The type of the input, E.g. ingredient, process parameter"
         attributes?:
-            type: List<InputAttributeValue>
+            type: List<input_attributes.InputAttributeValue>
             desc: "The attributes of the input"
         category_id?:
-            type: Integer
+            type: ObjectId
             desc: The unique identifier for the category to set for the input
 
-InputAttributeValue:
-    type: Object
-    properties:
-        attribute_id:
-            type: Integer
-            desc: "A unique identifier for the attribute."
-        quantity_dec?:
-            type: Decimal
-            desc: "The value for the metadata, if it is of numeric type"
-        quantity_json?:
-            type: JsonValue
-            desc: "The value for the metadata, if it is not of numeric type"
-
 InputSimple:
     type: Object
     properties:
         input_id:
-            type: Integer
+            type: ObjectId
             desc: "A unique identifier for the id"
 
 Data: