TransitionListener 2.0.0__py3-none-any.whl

transitionlistener/runtime_options.py

@@ -0,0 +1,278 @@
+"""Optional runtime overrides for scripts and benchmark runners.
+
+The core configuration classes live in :mod:`transitionlistener.config`.  This
+module keeps input-dictionary parsing and named precision bundles out of that
+defaults-only file.
+
+Part of TransitionListener v2.0
+Documentation: https://tasillo.de/TransitionListener/
+
+Authors:
+    Jonas Matuszak <jonas.matuszak@kit.edu>
+    Carlo Tasillo <carlo.tasillo@ific.uv.es>
+"""
+
+import copy
+from collections.abc import Mapping
+
+from transitionlistener.config import TracingConf
+from transitionlistener import errors
+
+
+ALGORITHM_MODES = ("adaptive_step_size", "fixed_step_size")
+
+
+PRECISION_OVERRIDE_KEYS = (
+    "precision_trace_field_accuracy",
+    "precision_trace_temp_accuracy",
+    "precision_trace_dtstart",
+    "precision_trace_tjump",
+    "precision_trace_dtmin",
+    "precision_trace_local_n",
+    "precision_trace_local_edge",
+    "precision_deform_converge_0",
+    "precision_deform_fRatioConv",
+)
+
+PERCOLATION_OVERRIDE_KEYS = (
+    "percolation_integral_method",
+    "percolation_time_temperature_mode",
+    "percolation_n_action",
+    "percolation_n_action_min",
+    "percolation_n_action_increment",
+    "percolation_n_action_max",
+    "percolation_maxit",
+    "percolation_max_action_temperatures",
+    "percolation_acc_tperc",
+    "percolation_acc_tfinal",
+    "percolation_acc_rh",
+    "percolation_weak_threshold",
+    "percolation_jitter_GH4_threshold",
+    "percolation_action_jitter_tunneltight_rescue",
+    "percolation_n_jitter_save",
+)
+
+GW_OVERRIDE_KEYS = (
+    "gw_wall_velocity",
+)
+
+PRECISION_MODE_NAMES = ("default", "robust", "xtrace", "tunneltight", "benchmark")
+
+
+def normalize_precision_mode(precision_mode: str | None) -> str:
+    """Return a validated precision-mode label, defaulting ``None`` to ``"default"``."""
+    if precision_mode is None:
+        return "default"
+    mode = str(precision_mode)
+    if mode not in PRECISION_MODE_NAMES:
+        raise ValueError(f"Unknown precision_mode {precision_mode!r}.")
+    return mode
+
+
+def precision_mode_profile(mode: str) -> dict:
+    """Materialise the named tracing/tunneling override bundle for ``mode``."""
+    default_conf = TracingConf()
+    default_trace = default_conf.tracing_args
+    default_tunnel = default_conf.tunneling_params["deformation_deform_params"]
+    profile = {
+        "precision_trace_field_accuracy": default_conf.tracing_field_accuracy,
+        "precision_trace_temp_accuracy": default_conf.tracing_temp_accuracy,
+        "precision_trace_dtstart": default_trace["dtstart"],
+        "precision_trace_tjump": default_trace["tjump"],
+        "precision_trace_dtmin": default_trace["dtmin"],
+        "precision_trace_local_n": default_trace["local_min_args"]["n"],
+        "precision_trace_local_edge": default_trace["local_min_args"]["edge"],
+        "precision_deform_converge_0": default_tunnel["converge_0"],
+        "precision_deform_fRatioConv": default_tunnel["fRatioConv"],
+    }
+
+    if mode == "robust":
+        profile.update(
+            precision_trace_field_accuracy=3e-4,
+            precision_trace_temp_accuracy=3e-4,
+            precision_trace_dtstart=5e-5,
+            precision_trace_tjump=5e-6,
+            precision_trace_dtmin=3e-7,
+            precision_trace_local_n=200,
+            precision_trace_local_edge=0.03,
+        )
+    if mode in {"xtrace", "benchmark"}:
+        profile.update(
+            precision_trace_field_accuracy=1e-4,
+            precision_trace_temp_accuracy=1e-4,
+            precision_trace_dtstart=2e-5,
+            precision_trace_tjump=2e-6,
+            precision_trace_dtmin=1e-7,
+            precision_trace_local_n=300,
+            precision_trace_local_edge=0.02,
+        )
+    if mode in {"tunneltight", "benchmark"}:
+        profile.update(
+            precision_deform_converge_0=1.0,
+            precision_deform_fRatioConv=5e-3,
+        )
+    return profile
+
+
+def apply_precision_overrides(tracing_conf, overrides: dict[str, float | int | None]) -> None:
+    """Apply individual tracing and path-deformation overrides in place."""
+    if overrides["precision_trace_field_accuracy"] is not None:
+        tracing_conf.tracing_field_accuracy = float(overrides["precision_trace_field_accuracy"])
+    if overrides["precision_trace_temp_accuracy"] is not None:
+        tracing_conf.tracing_temp_accuracy = float(overrides["precision_trace_temp_accuracy"])
+
+    tracing = copy.deepcopy(tracing_conf.tracing_args)
+    for key, trace_key in (
+        ("precision_trace_dtstart", "dtstart"),
+        ("precision_trace_tjump", "tjump"),
+        ("precision_trace_dtmin", "dtmin"),
+    ):
+        if overrides[key] is not None:
+            tracing[trace_key] = float(overrides[key])
+
+    local = dict(tracing.get("local_min_args", {}))
+    if overrides["precision_trace_local_n"] is not None:
+        local["n"] = int(round(float(overrides["precision_trace_local_n"])))
+    if overrides["precision_trace_local_edge"] is not None:
+        local["edge"] = float(overrides["precision_trace_local_edge"])
+    tracing["local_min_args"] = local
+    tracing_conf.tracing_args = tracing
+
+    tunneling = copy.deepcopy(tracing_conf.tunneling_params)
+    deform = dict(tunneling.get("deformation_deform_params", {}))
+    if overrides["precision_deform_converge_0"] is not None:
+        deform["converge_0"] = float(overrides["precision_deform_converge_0"])
+    if overrides["precision_deform_fRatioConv"] is not None:
+        deform["fRatioConv"] = float(overrides["precision_deform_fRatioConv"])
+    tunneling["deformation_deform_params"] = deform
+    tracing_conf.tunneling_params = tunneling
+
+
+def apply_precision_mode(tracing_conf, precision_mode: str | None) -> str:
+    """Resolve ``precision_mode`` and apply its predefined override profile."""
+    mode = normalize_precision_mode(precision_mode)
+    if mode != "default":
+        apply_precision_overrides(tracing_conf, precision_mode_profile(mode))
+    return mode
+
+
+def _as_int(value, minimum: int) -> int:
+    """Cast ``value`` to ``int`` while enforcing a lower bound."""
+    return max(int(round(float(value))), int(minimum))
+
+
+def _as_float(value, minimum: float | None = None) -> float:
+    """Cast ``value`` to ``float`` while optionally enforcing a lower bound."""
+    number = float(value)
+    if minimum is not None:
+        number = max(number, float(minimum))
+    return number
+
+
+def apply_percolation_overrides(percolation_conf, overrides: dict[str, object]) -> None:
+    """Apply runtime percolation controls parsed from model or scan inputs."""
+    overrides = {key: overrides.get(key) for key in PERCOLATION_OVERRIDE_KEYS}
+
+    if overrides["percolation_integral_method"] is not None:
+        method = str(overrides["percolation_integral_method"])
+        if method not in {"ode", "double_integral"}:
+            raise ValueError("percolation_integral_method must be 'ode' or 'double_integral'.")
+        percolation_conf.integral_method = method
+    if overrides["percolation_time_temperature_mode"] is not None:
+        mode = str(overrides["percolation_time_temperature_mode"])
+        if mode not in {"sound_speed", "bag"}:
+            raise ValueError("percolation_time_temperature_mode must be 'sound_speed' or 'bag'.")
+        percolation_conf.time_temperature_mode = mode
+
+    int_minimums = {
+        "percolation_n_action": ("n_action", 2),
+        "percolation_n_action_min": ("n_action_min", 2),
+        "percolation_n_action_increment": ("n_action_increment", 1),
+        "percolation_n_action_max": ("n_action_max", 2),
+        "percolation_maxit": ("maxit", 1),
+        "percolation_max_action_temperatures": ("max_action_temperatures", 1),
+        "percolation_n_jitter_save": ("n_jitter_save", 0),
+    }
+    for key, (attr, minimum) in int_minimums.items():
+        if overrides[key] is not None:
+            setattr(percolation_conf, attr, _as_int(overrides[key], minimum))
+
+    float_minimums = {
+        "percolation_acc_tperc": ("acc_tperc", 0.0),
+        "percolation_acc_tfinal": ("acc_tfinal", 0.0),
+        "percolation_acc_rh": ("acc_rh", 0.0),
+        "percolation_weak_threshold": ("weak_threshold", 0.0),
+        "percolation_jitter_GH4_threshold": ("jitter_GH4_threshold", 0.0),
+    }
+    for key, (attr, minimum) in float_minimums.items():
+        if overrides[key] is not None:
+            setattr(percolation_conf, attr, _as_float(overrides[key], minimum=minimum))
+
+    bool_overrides = {
+        "percolation_action_jitter_tunneltight_rescue": "action_jitter_tunneltight_rescue",
+    }
+    for key, attr in bool_overrides.items():
+        if overrides[key] is not None:
+            setattr(percolation_conf, attr, bool(overrides[key]))
+
+    percolation_conf.n_action_max = max(
+        int(percolation_conf.n_action_max),
+        int(percolation_conf.n_action_min),
+    )
+
+
+def apply_gw_overrides(gw_conf, overrides: dict[str, object]) -> None:
+    """Apply runtime GW-observable overrides consumed from scan inputs."""
+    if overrides.get("gw_wall_velocity") is not None:
+        gw_conf.wall_velocity = overrides["gw_wall_velocity"]
+
+
+def apply_input_overrides(potential, args: tuple, dargs: dict) -> tuple[tuple, dict]:
+    """Pop shared runtime-override keys from the model input dictionary.
+
+    Consumes ``precision_mode``, ``percolation_algorithm_mode`` and the keyed
+    override dicts; leaves the remaining entries untouched for model-specific
+    parameter validation.
+    """
+    args = list(args)
+    dargs = dict(dargs)
+    inputparam_dict = None
+
+    if args and isinstance(args[0], Mapping):
+        inputparam_dict = dict(args[0])
+        args[0] = inputparam_dict
+    else:
+        for key in ("inputparam_dict", "input_dict"):
+            value = dargs.get(key)
+            if isinstance(value, Mapping):
+                inputparam_dict = dict(value)
+                dargs[key] = inputparam_dict
+                break
+
+    if inputparam_dict is None:
+        return tuple(args), dargs
+
+    precision_mode = inputparam_dict.pop("precision_mode", None)
+    algorithm_mode = inputparam_dict.pop("percolation_algorithm_mode", None)
+    precision_overrides = {key: inputparam_dict.pop(key, None) for key in PRECISION_OVERRIDE_KEYS}
+    percolation_overrides = {key: inputparam_dict.pop(key, None) for key in PERCOLATION_OVERRIDE_KEYS}
+    gw_overrides = {key: inputparam_dict.pop(key, None) for key in GW_OVERRIDE_KEYS}
+
+    try:
+        apply_precision_mode(potential.config.tracingConf, precision_mode)
+    except ValueError as exc:
+        raise errors.InitPotentialError(str(exc)) from exc
+
+    if algorithm_mode is not None:
+        algorithm_mode = str(algorithm_mode)
+        if algorithm_mode not in ALGORITHM_MODES:
+            raise errors.InitPotentialError(
+                f"percolation_algorithm_mode must be one of {ALGORITHM_MODES}, "
+                f"got {algorithm_mode!r}."
+            )
+        potential.config.percolationConf.algorithm_mode = algorithm_mode
+
+    apply_precision_overrides(potential.config.tracingConf, precision_overrides)
+    apply_percolation_overrides(potential.config.percolationConf, percolation_overrides)
+    apply_gw_overrides(potential.config.gwConf, gw_overrides)
+    return tuple(args), dargs

transitionlistener/tab_data/30f_fs{hd}_100fDMGP_ceffyl/log.txt

@@ -0,0 +1,16 @@
+Date created:time.struct_time(tm_year=2023, tm_mon=5, tm_mday=15, tm_hour=16, tm_min=52, tm_sec=35, tm_wday=0, tm_yday=135, tm_isdst=1)
+la-forge cores: ['/data/taylor_group/william_lamb/analyses/NANOGrav/NG15_v1p1/dm_gp/ng15_dmgp/fshd_dmgp/chain.core']
+KDE function: FFTKDE
+KDE kernel choice: epanechnikov
+Bandwidth choice: <function sj at 0x2b8ea42b2040>
+Bandwidth values: [0.01382799 0.0076616  0.00881017 0.01775468 0.03435934 0.0352577
+ 0.03740746 0.02612554 0.03060202 0.0316155  0.03392853 0.02787687
+ 0.0277001  0.03093307 0.03309433 0.05967801 0.03425261 0.02855942
+ 0.03035076 0.03150779 0.028027   0.03046142 0.03247571 0.02890307
+ 0.03327375 0.01868055 0.0296922  0.03165958 0.03124277 0.0287242 ]
+log10rho grid: [-9.99999894 -9.99952853 -9.99905811 ... -5.29728896 -5.29681855
+ -5.29634814]
+Thin chain for KDE? False
+Thin chain for bandwidth? False
+Bootstrap? False
+Number of bootstrapped samples: None

transitionlistener/tab_data/30f_fs{hd}_100fDMGP_ceffyl/log10rholabels.txt

@@ -0,0 +1,30 @@
+gwb_log10_rho_0
+gwb_log10_rho_1
+gwb_log10_rho_2
+gwb_log10_rho_3
+gwb_log10_rho_4
+gwb_log10_rho_5
+gwb_log10_rho_6
+gwb_log10_rho_7
+gwb_log10_rho_8
+gwb_log10_rho_9
+gwb_log10_rho_10
+gwb_log10_rho_11
+gwb_log10_rho_12
+gwb_log10_rho_13
+gwb_log10_rho_14
+gwb_log10_rho_15
+gwb_log10_rho_16
+gwb_log10_rho_17
+gwb_log10_rho_18
+gwb_log10_rho_19
+gwb_log10_rho_20
+gwb_log10_rho_21
+gwb_log10_rho_22
+gwb_log10_rho_23
+gwb_log10_rho_24
+gwb_log10_rho_25
+gwb_log10_rho_26
+gwb_log10_rho_27
+gwb_log10_rho_28
+gwb_log10_rho_29

transitionlistener/tab_data/30f_fs{hd}_100fDMGP_ceffyl/pulsar_list.txt

@@ -0,0 +1 @@
+freespec

transitionlistener/tab_data/HLV-O2-PLI.csv

@@ -0,0 +1,82 @@
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transitionlistener/tab_data/HLV-O2-noise.csv

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transitionlistener/tab_data/HLVK-design-noise.csv

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transitionlistener/tab_data/NG15_PLI_hc.csv

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