TB2J 0.9.5rc0__py3-none-any.whl → 0.9.7rc0__py3-none-any.whl

TB2J/anisotropy.py

@@ -0,0 +1,672 @@
+import random
+import numpy as np
+import matplotlib.pyplot as plt
+from scipy.interpolate import LinearNDInterpolator
+from scipy.optimize import curve_fit
+from numpy.linalg import matrix_rank
+from dataclasses import dataclass
+from pathlib import Path
+
+
+@dataclass
+class Anisotropy:
+    T: np.ndarray = None
+    direction: np.ndarray = None
+    amplitude: float = None
+    isotropic_part: float = None
+
+    @classmethod
+    def from_T6(cls, T6):
+        T = T6_to_T(T6)
+        T -= np.trace(T) / 3 * np.eye(3)
+        direction, amplitude = aniostropy_tensor_to_vector(T)
+        return cls(
+            direction=direction, amplitude=amplitude, isotropic_part=isotropic_part, T=T
+        )
+
+    @classmethod
+    def from_direction_amplitude(cls, direction, amplitude, isotropic_part=0.0):
+        T = anisotropy_vector_to_tensor(direction, amplitude)
+        return cls(
+            T=T, direction=direction, amplitude=amplitude, isotropic_part=isotropic_part
+        )
+
+    @classmethod
+    def from_tensor(cls, T):
+        isotropic_part = np.trace(T) / 3
+        T -= np.trace(T) / 3 * np.eye(3)
+        direction, amplitude = aniostropy_tensor_to_vector(T)
+        return cls(
+            T=T, direction=direction, amplitude=amplitude, isotropic_part=isotropic_part
+        )
+
+    def __post_init__(self):
+        if self.isotropic_part is None:
+            self.isotropic_part = 0
+        if self.T is None:
+            self.T = anisotropy_vector_to_tensor(
+                self.direction, self.amplitude
+            ) + self.isotropic_part * np.eye(3)
+        elif self.direction is None or self.amplitude is None:
+            self.isotropic_part = np.trace(self.T) / 3
+            # print(f'aniostropic tensor = {self.anisotropic_part}')
+            self.direction, self.amplitude = aniostropy_tensor_to_vector(
+                self.anisotropic_part
+            )
+            self.isotropic_part = np.trace(self.T) / 3
+        if self.T is None or self.direction is None or self.amplitude is None:
+            raise ValueError(
+                "The input does not have enough information to create the anisotropy object."
+            )
+
+    def is_rank_one(self):
+        """
+        single-axis anisotropy should be rank-one.
+        """
+        print(f"rank = {matrix_rank(self.anisotropic_part)}")
+        print(f"anisotropic_part = {self.anisotropic_part}")
+        return matrix_rank(self.anisotropic_part) == 1
+
+    def tensor(self):
+        return self.T
+
+    @property
+    def anisotropic_part(self):
+        return self.T - self.isotropic_part * np.eye(3)
+
+    @property
+    def axis(self):
+        return self.direction
+
+    @property
+    def axis_type(self):
+        if self.is_easy_axis():
+            return "easy"
+        else:
+            return "hard"
+
+    def axis_angle(self, unit="rad"):
+        theta = np.arccos(self.direction[2])
+        phi = np.arctan2(self.direction[1], self.direction[0])
+        if unit.startswith("deg"):
+            theta = theta * 180 / np.pi
+            phi = phi * 180 / np.pi
+        return theta, phi
+
+    def amplitude(self):
+        return self.amplitude
+
+    def is_easy_axis(self):
+        return self.amplitude > 0
+
+    def is_hard_axis(self):
+        return self.amplitude < 0
+
+    def energy_vector_form(self, S=None, angle=None, include_isotropic=False):
+        if S is None:
+            S = sphere_to_cartesian(angle)
+        print(f"S shape = {S.shape}")
+        # return anisotropy_energy_vector_form(S, *angles, self.amplitude, self.isotropic_part)
+        print(f"direction shape = {self.direction.shape}")
+        print(f"amplitude shape = {self.amplitude.shape}")
+        print(f"iso shape = {self.isotropic_part.shape}")
+        E = -self.amplitude * (S @ self.direction) ** 2
+        if include_isotropic:
+            E = E + self.isotropic_part
+        print(f"E shape = {E.shape}")
+        return E
+
+    def energy_tensor_form(self, S=None, angle=None, include_isotropic=False):
+        # return anisotropy_energy_tensor_form(self.T, S)
+        if S is None:
+            S = sphere_to_cartesian(angle)
+        if include_isotropic:
+            return -S.T @ self.T @ S
+        else:
+            return -S.T @ self.anisotropic_part @ S
+
+    @classmethod
+    def fit_from_data(cls, thetas, phis, values, test=False):
+        """
+        Fit the anisotropic tensor to the data
+        parameters:
+           thetas: the polar angle in degree
+           phis: the azimuthal angle in degree
+           values: the anisotropic value
+        Return:
+           the anisotropic object fitted from the data
+        """
+        angles = np.vstack([thetas, phis])
+        params, cov = curve_fit(anisotropy_energy, angles, values)
+        fitted_values = anisotropy_energy(angles, *params)
+
+        delta = fitted_values - values
+
+        # print(f'Max value = {np.max(values)}, Min value = {np.min(values)}')
+        if np.abs(delta).max() > 1e-5:
+            print(f"Warning: The fitting is not consistent with the data.")
+            print(f"Max-min = {np.max(values) - np.min(values)}")
+            print(f"delta = {np.max(np.abs(delta))}")
+        T = T6_to_T(params)
+        obj = cls(T=T)
+
+        if test:
+            values2 = []
+            for i in range(len(thetas)):
+                E = obj.energy_tensor_form(
+                    angle=[thetas[i], phis[i]], include_isotropic=True
+                )
+                values2.append(E)
+            delta2 = np.array(values2) - values
+            # print(delta2)
+
+            ax = plot_3D_scatter(angles, values - np.min(values), color="r")
+            plot_3D_scatter(angles, values2 - np.min(values), ax=ax, color="b")
+            plt.show()
+
+        return obj
+
+    @classmethod
+    def fit_from_data_vector_form(cls, thetas, phis, values):
+        """
+        Fit the anisotropic tensor to the data
+        parameters:
+           thetas: the polar angle in degree
+           phis: the azimuthal angle in degree
+           values: the anisotropic value
+        Return:
+           the anisotropic object fitted from the data
+        """
+        angles = np.vstack([thetas, phis])
+        params, cov = curve_fit(anisotropy_energy_vector_form, angles, values)
+        fitted_values = anisotropy_energy_vector_form(angles, *params)
+        delta = fitted_values - values
+        print(f"Max value = {np.max(values)}, Min value = {np.min(values)}")
+        print(f"Max-min = {np.max(values) - np.min(values)}")
+        # print(f'delta = {delta}')
+        theta_a, phi_a, amplitude, isotropic_part = params
+        direction = sphere_to_cartesian([theta_a, phi_a])
+        return cls.from_direction_amplitude(
+            direction=direction, amplitude=amplitude, isotropic_part=isotropic_part
+        )
+
+    @classmethod
+    def fit_from_data_file(cls, fname, method="tensor"):
+        """
+        Fit the anisotropic tensor to the data
+        parameters:
+           fname: the file name of the data
+        Return:
+           anisotropy: the anisotropic object
+        """
+        data = np.loadtxt(fname)
+        theta, phi, value = data[:, 0], data[:, 1], data[:, 2]
+        if method == "tensor":
+            return cls.fit_from_data(theta, phi, value)
+        elif method == "vector":
+            return cls.fit_from_data_vector_form(theta, phi, value)
+        else:
+            raise ValueError(f"Unknown method {method}")
+
+    def plot_3d(self, ax=None, figname=None, show=True, surface=True):
+        """
+        plot the anisotropic energy in all directions in 3D
+        S is the spin unit vector
+        """
+        # theta, phi = np.meshgrid(theta, phi)
+        # value = self.energy_tensor_form(sphere_to_cartesian([theta, phi]))
+        # x, y, z = sphere_to_cartesian(theta, phi, )
+
+        if surface:
+            thetas = np.arange(0, 181, 1)
+            phis = np.arange(0, 362, 1)
+
+            X, Y = np.meshgrid(thetas, phis)
+            Z = np.zeros(X.shape)
+            for i in range(len(thetas)):
+                for j in range(len(phis)):
+                    # S = sphere_to_cartesian([thetas[i], phis[j]])
+                    # E = self.energy_vector_form(angle=[thetas[i], phis[j]])
+                    E = self.energy_tensor_form(angle=[thetas[i], phis[j]])
+                    Z[j, i] = E
+            Z = Z - np.min(Z)
+            imax = np.argmax(Z)
+            X_max, Y_max, Z_max = (
+                X.flatten()[imax],
+                Y.flatten()[imax],
+                Z.flatten()[imax],
+            )
+            imin = np.argmin(Z)
+            X_min, Y_min, Z_min = (
+                X.flatten()[imin],
+                Y.flatten()[imin],
+                Z.flatten()[imin],
+            )
+
+            X, Y, Z = sphere_to_cartesian([X, Y], Z)
+            X_max, Y_max, Z_max = sphere_to_cartesian([X_max, Y_max], r=Z_max)
+            X_min, Y_min, Z_min = sphere_to_cartesian([X_min, Y_min], r=Z_min)
+            fig = plt.figure()
+            ax = fig.add_subplot(111, projection="3d")
+            ax.plot_surface(X, Y, Z, cmap="viridis", alpha=0.5)
+            # scatter the minimal and maximal points
+            ax.scatter(X_max, Y_max, Z_max, color="r", marker="o")
+            ax.scatter(X_min, Y_min, Z_min, color="b", marker="o")
+
+            # draw the easy axis
+            if self.is_easy_axis():
+                color = "r"
+            else:
+                color = "b"
+            d = self.direction
+            d = d / np.sign(d[0])
+            d *= np.abs(self.amplitude) * 2.5
+            ax.quiver(
+                -d[0],
+                -d[1],
+                -d[2],
+                2 * d[0],
+                2 * d[1],
+                2 * d[2],
+                color=color,
+                arrow_length_ratio=0.03,
+            )
+
+        else:
+            fig = plt.figure()
+            ax = fig.add_subplot(111, projection="3d")
+            thetas = np.arange(0, 181, 5)
+            phis = np.arange(0, 360, 5)
+            Es = []
+            angles = []
+            for t in thetas:
+                for p in phis:
+                    # S = sphere_to_cartesian([t, p])
+                    angles.append([t, p])
+                    Es.append(
+                        self.energy_tensor_form(angle=[t, p], include_isotropic=False)
+                    )
+                    # x, y, z = sphere_to_cartesian([t, p], r=E)
+                    # ax.scatter(x,y, z, cmap='viridis')
+            angles = np.array(angles)
+            # plot_3D_scatter(angles.T, Es-np.min(Es), ax=None)
+            plot_3D_scatter(angles.T, Es, ax=None)
+        if figname is not None:
+            plt.savefig(figname)
+            plt.close()
+        if show:
+            plt.show()
+
+
+def plot_3D_scatter(angles, values, ax=None, **kwargs):
+    if ax is None:
+        fig = plt.figure()
+        ax = fig.add_subplot(111, projection="3d")
+    thetas, phis = angles
+    for i in range(len(thetas)):
+        E = values[i]
+        t, p = thetas[i], phis[i]
+        x, y, z = sphere_to_cartesian([t, p], r=E)
+        ax.scatter(x, y, z, **kwargs)
+    return ax
+
+
+def plot_3D_surface(fname, figname=None, show=True):
+    data = np.loadtxt(fname)
+    theta, phi, value = data[:, 0], data[:, 1], data[:, 2]
+    value = value - np.min(value)
+
+    imax = np.argmax(value)
+    angle_max = theta[imax], phi[imax]
+    imin = np.argmin(value)
+    angle_min = theta[imin], phi[imin]
+    amplitude = np.max(value) - np.min(value)
+
+    fig = plt.figure()
+    ax = fig.add_subplot(111, projection="3d")
+    x, y, z = sphere_to_cartesian([theta, phi], r=value)
+    # ax.plot_surface(x, y, z, triangles=None, cmap='viridis')
+    ax.scatter(x, y, z, cmap="viridis")
+    # ax.scatter(theta,phi, value, cmap='viridis')
+    # draw a surface plot with a color map.
+    if figname is not None:
+        plt.savefig(figname)
+    if show:
+        plt.show()
+    plt.close()
+    return angle_max, angle_min, amplitude
+
+
+def plot_3D_surface_interpolation(fname, figname=None, show=True):
+    data = np.loadtxt(fname)
+    theta, phi, value = data[:, 0], data[:, 1], data[:, 2]
+
+    imax = np.argmax(value)
+    angle_max = theta[imax], phi[imax]
+    imin = np.argmin(value)
+    angle_min = theta[imin], phi[imin]
+    amplitude = np.max(value) - np.min(value)
+
+    value = value - np.min(value)
+    # interploate the data
+    interp = LinearNDInterpolator((theta, phi), value)
+    thetas = np.arange(0, 181, 1)
+    phis = np.arange(0, 340, 1)
+
+    X, Y = np.meshgrid(thetas, phis)
+    Z = interp(X, Y)
+    print(Z)
+    # print(np.max(Z), np.min(Z))
+    Z = Z - np.min(Z)
+    X, Y, Z = sphere_to_cartesian([X, Y], Z)
+    fig = plt.figure()
+    ax = fig.add_subplot(111, projection="3d")
+    ax.plot_surface(X, Y, Z, cmap="viridis")
+    if figname is not None:
+        plt.savefig(figname)
+    if show:
+        plt.show()
+    plt.close()
+    return angle_max, angle_min, amplitude
+
+
+def sphere_to_cartesian(angles, r=1):
+    """
+    Transform the spherical coordinates to the cartesian coordinates
+    parameters:
+    angles: the polar and azimuthal angle in degree
+    r: the radius
+    Return:
+    x, y, z: the cartesian coordinates
+    """
+    # print(angles)
+    theta, phi = angles
+    theta = theta * np.pi / 180
+    phi = phi * np.pi / 180
+    x = r * np.sin(theta) * np.cos(phi)
+    y = r * np.sin(theta) * np.sin(phi)
+    z = r * np.cos(theta)
+    return np.array([x, y, z])
+
+
+def cartesian_to_sphere(xyz):
+    """
+    Transform the cartesian coordinates to the spherical coordinates
+    parameters:
+    xyz: the cartesian coordinates
+    Return:
+    theta, phi: the polar and azimuthal angle in degree
+    """
+    x, y, z = xyz
+    r = np.linalg.norm(xyz)
+    theta = np.arccos(z / r)
+    phi = np.arctan2(y, x)
+    theta = theta * 180 / np.pi
+    phi = phi * 180 / np.pi
+    return np.array([theta, phi])
+
+
+def anisotropy_energy(angle, Txx, Tyy, Tzz, Tyz, Tzx, Txy):
+    """
+    Calculate the anisotropic energy
+    parameters:
+    angle: the polar and azimuthal angle in degree
+    Txx, Tyy, Tzz, Tyz, Tzx, Txy: the anisotropic tensor
+    Return:
+    E: the anisotropic energy
+    """
+    # transform the tensor to the matrix form
+    T = np.array([[Txx, Txy, Tzx], [Txy, Tyy, Tyz], [Tzx, Tyz, Tzz]])
+
+    S = sphere_to_cartesian(angle)
+    E = -np.diag(S.T @ T @ S)
+    return E
+
+
+def anisotropy_energy_vector_form(S, k_theta, k_phi, amplitude, isotropic_part=0):
+    """
+    Calculate the anisotropic energy from the vector form
+    parameters:
+        S: the spin vector
+        kx, ky, kz: the direction of the anisotropy
+    """
+    Scart = sphere_to_cartesian(S)
+    k = sphere_to_cartesian([k_theta, k_phi])
+    print(f"k shape = {k.shape}")
+    print(f"Scart shape = {Scart.shape}")
+    E = [-amplitude * (Si @ k) ** 2 + isotropic_part for Si in Scart.T]
+    return E
+
+
+def T6_to_T(T6):
+    """
+    Transform the anisotropic tensor to the matrix form
+    """
+    Txx, Tyy, Tzz, Tyz, Tzx, Txy = T6
+    T = np.array([[Txx, Txy, Tzx], [Txy, Tyy, Tyz], [Tzx, Tyz, Tzz]])
+    return T
+
+
+def is_rank_one(T):
+    """
+    Check if the tensor is rank one
+    """
+    return matrix_rank(T) == 1
+
+
+def fit_anisotropy(thetas, phis, values):
+    """
+    Fit the anisotropic tensor to the data
+    parameters:
+    theta: the polar angle in degree
+    phi: the azimuthal angle in degree
+    value: the anisotropic value
+    Return:
+     T: the anisotropic tensor
+    """
+    # transform the data to the cartesian coordinates
+    # fit the data to the anisotropic energy
+    angles = np.vstack([thetas, phis])
+    params, cov = curve_fit(anisotropy_energy, angles, values)
+    # check if the fitting is consistent with the data
+    T = T6_to_T(params)
+    direction, amp = anisostropy_tensor_to_vector(T)
+    return direction, amp
+
+
+def anisotropy_energy_vector_form2(direction, amplitude, S):
+    """
+    Calculate the anisotropic energy
+    parameters:
+    direction: the easy axis/ hard axis of the anisotropy
+    amplitude: the amplitude of the anisotropy
+    S: the spin vector
+    Return:
+    E: the anisotropic energy, E = - amplitude * (S @ direction)**2
+    """
+    # normalize the direction
+    direction = direction / np.linalg.norm(direction)
+    print(f"direction shape = {direction.shape}")
+    E = -amplitude * (S @ direction) ** 2
+    return E
+
+
+def anisotropy_energy_tensor_form(T, S):
+    """
+    Calculate the anisotropic energy
+    parameters:
+    T: the anisotropic tensor
+    S: the spin vector
+    Return:
+    E: the anisotropic energy, E = - S.T @ T @ S
+    """
+    E = -S.T @ T @ S
+    return E
+
+
+def anisotropy_vector_to_tensor(direction, amplitude):
+    """
+    Transform the anisotropic vector to the anisotropic tensor
+    parameters:
+    direction: the easy axis/ hard axis of the anisotropy (direction is normalized)
+    amplitude: the amplitude of the anisotropy
+    Return:
+    T: the anisotropic tensor
+    """
+    direction = direction / np.linalg.norm(direction)
+    T = amplitude * np.outer(direction, direction)
+    return T
+
+
+def aniostropy_tensor_to_vector(T):
+    """
+    Transform the anisotropic tensor to the anisotropic vector
+    parameters:
+    T: the anisotropic tensor
+    Return:
+    direction: the easy axis/ hard axis of the anisotropy
+    amplitude: the amplitude of the anisotropy, if the anisotropy is positive, the easy axis is the easy axis, otherwise, the hard axis is the easy axis
+    """
+    w, v = np.linalg.eig(T)
+    if not is_rank_one(T):
+        # print("Warning: The anisotropy  tensor is not rank one. The tensor cannot be transformed to the vector form.")
+        # print(f"The eigenvalues are {w}.")
+        pass
+    index = np.argmax(np.abs(w))
+    direction = v[:, index]
+    direction = direction / np.sign(direction[0])
+    amplitude = w[index]
+    return direction, amplitude
+
+
+def test_anisotorpy_vector_to_tensor():
+    direction = np.random.rand(3)
+    direction = direction / np.linalg.norm(direction)
+    amplitude = random.uniform(-1, 1)
+    S = np.random.rand(3)
+    S = S / np.linalg.norm(S)
+    T = anisotropy_vector_to_tensor(direction, amplitude)
+    E_vector = anisotropy_energy_vector_form(direction, amplitude, S)
+    E_tensor = anisotropy_energy_tensor_form(T, S)
+    diff = E_vector - E_tensor
+    print(f"diff = {diff}")
+    assert np.abs(diff) < 1e-10
+
+    # test if the inverse transformation get the direction and amplitude back
+    dir2, amp2 = aniostropy_tensor_to_vector(T)
+
+    # set the first element of the direction to be positive
+    if direction[0] * dir2[0] < 0:
+        dir2 = -dir2
+    diff = np.linalg.norm(dir2 - direction)
+    # print(f'direction = {direction}, amplitude = {amplitude}')
+    # print(f'dir2 = {dir2}, amp2 = {amp2}')
+    assert diff < 1e-10
+    assert np.abs(amp2 - amplitude) < 1e-10
+
+
+def test_anisotropy_tensor_to_vector():
+    T = np.random.rand(3, 3)
+    T = T + T.T
+    T = T - np.trace(T) / 3
+    direction, amplitude = aniostropy_tensor_to_vector(T)
+    T2 = anisotropy_vector_to_tensor(direction, amplitude)
+    print(f"T = {T}")
+    print(f"T2 = {T2}")
+    diff = np.linalg.norm(T - T2)
+    print(f"diff = {diff}")
+    assert diff < 1e-10
+
+
+def test_fit_anisotropy():
+    data = np.loadtxt("anisotropy.dat")
+    theta, phi, value = data[:, 0], data[:, 1], data[:, 2]
+    angles = np.vstack([theta, phi])
+    T6 = fit_anisotropy(theta, phi, value)
+    T = T6_to_T(T6)
+    if not is_rank_one(T):
+        print("Warning: The anisotropy  tensor is not rank one. ")
+    fitted_values = anisotropy_energy(angles, *T6)
+    delta = fitted_values - value
+    print(f"Max value = {np.max(value)}, Min value = {np.min(value)}")
+    print(
+        f"Max fitted value = {np.max(fitted_values)}, Min fitted value = {np.min(fitted_values)}"
+    )
+    for i in range(len(theta)):
+        print(
+            f"theta = {theta[i]}, phi = {phi[i]}, value = {value[i]}, fitted value = {fitted_values[i]}, delta = {delta[i]}"
+        )
+
+    easy_axis = easy_axis_from_tensor(T6)
+    print(f"easy_axis = {easy_axis}")
+
+
+def view_anisotropy_strain():
+    strains1 = [(x, 0.0) for x in np.arange(0.000, 0.021, 0.002)]
+    strains2 = [(0.02, y) for y in np.arange(0.000, 0.021, 0.002)]
+    strains = strains1 + strains2
+    path = Path("anisotropy_strain_from_tensor")
+    path.mkdir(exist_ok=True)
+    fname = "a.dat"
+    fh = open(fname, "w")
+    fh.write("# s0  s1  axis   amplitude   axis_type angle_111 \n")
+    for strain in strains:
+        s0, s1 = strain
+        ani = Anisotropy.fit_from_data_file(f"a{s0:.3f}_b{s1:.3f}_plusU.dat")
+        dx, dy, dz = ani.direction
+        angle_from_111 = (
+            np.arccos(ani.direction @ np.array([1, 1, 1]) / np.sqrt(3)) * 180 / np.pi
+        )
+        fh.write(
+            f"{s0:.3f}  {s1:.3f} ( {dx:.3f}  {dy:.3f}  {dz:.3f} ) {ani.amplitude:.5f} {ani.axis_type} {angle_from_111} \n"
+        )
+        ani.plot_3d(
+            surface=True, figname=path / f"a{s0:.3f}_b{s1:.3f}_plusU.png", show=False
+        )
+    fh.close()
+
+
+def view_anisotropy_strain_raw():
+    strains1 = [(x, 0.0) for x in np.arange(0.000, 0.021, 0.002)]
+    strains2 = [(0.02, y) for y in np.arange(0.000, 0.021, 0.002)]
+    strains = strains1 + strains2
+    path = Path("anisotropy_strain_raw")
+    path.mkdir(exist_ok=True)
+    fname = "a_raw.dat"
+    fh = open(fname, "w")
+    fh.write("# s0  s1  direction(max) direction(min)  amplitude\n")
+    for strain in strains:
+        print(f"strain = {strain}")
+        s0, s1 = strain
+        # plot_3D_surface(f"a{s0:.3f}_b{s1:.3f}_plusU.dat")
+        angle_max, angle_min, amplitude = plot_3D_surface(
+            f"a{s0:.3f}_b{s1:.3f}_plusU.dat",
+            figname=path / f"a{s0:.3f}_b{s1:.3f}_plusU.png",
+        )
+        dmax = sphere_to_cartesian(angle_max)
+        dmin = sphere_to_cartesian(angle_min)
+        fh.write(
+            f"{s0:.3f}  {s1:.3f} ( {dmax[0]:.3f}  {dmax[1]:.3f}  {dmax[2]:.3f} ) ({dmin[0]:.3f}  {dmin[1]:.3f}  {dmin[2]:.3f}) {amplitude:.5f} \n"
+        )
+
+        plt.close()
+
+
+if __name__ == "__main__":
+    # test_fit_anisotropy()
+    # test_anisotorpy_vector_to_tensor()
+    # test_anisotropy_tensor_to_vector()
+    # ani = Anisotropy.fit_from_data("anisotropy.dat")
+    # ani = Anisotropy.fit_from_data_file("a0.002_b0.000_plusU.dat")
+    # ani = Anisotropy.fit_from_data_file("a0.002_b0.000_plusU.dat", method='tensor')
+    # print(f'direction = {ani.direction}')
+    # ani.plot_3d()
+    # plot_3D_surface("a0.002_b0.000_plusU.dat")
+    # plot_3D_surface_interpolation("a0.020_b0.020_plusU.dat")
+    # plot_3D_surface("a0.020_b0.020_plusU.dat")
+    # plot_3D_surface("a0.020_b0.000_plusU.dat")
+    view_anisotropy_strain()
+    # view_anisotropy_strain_raw()
+    # s0=0.000
+    # s1=0.000
+    # plot_3D_surface_interpolation(f"a{s0:.3f}_b{s1:.3f}_plusU.dat", figname=None)

TB2J/contour.py

@@ -1,11 +1,19 @@
 import numpy as np
 from scipy.special import roots_legendre
+from TB2J.utils import simpson_nonuniform_weight
 
 
 class Contour:
     def __init__(self, emin, emax=0.0):
         self.emin = emin
         self.emax = emax
+        self._weights = None
+
+    @property
+    def weights(self):
+        if self._weights is None:
+            self._weights = simpson_nonuniform_weight(self.path)
+        return self._weights
 
     def build_path_semicircle(self, npoints, endpoint=True):
         R = (self.emax - self.emin) / 2.0