SpecProc 1.0.0__py3-none-any.whl

specproc/__init__.py

@@ -0,0 +1,9 @@
+"""
+SpecProc: PyQt GUI application for echelle spectrograph FITS data processing.
+
+A complete spectral reduction pipeline inspired by the gamse package,
+providing both automated and step-by-step processing with interactive visualization.
+"""
+
+__version__ = "0.1.0"
+__author__ = "Spectral Processing Team"

specproc/calib_data/linelists/FeAr.dat

@@ -0,0 +1,375 @@
+# FEAR - FeAr Line List 3000A-10,000A by D. Willmarth
+# units Angstroms
+
+3020.6391  FeI
+3024.0325  FeI
+3037.3887  FeI
+3047.6043  FeI
+3057.4456  FeI
+3059.0856  FeI
+3225.7850  FeI
+3243.6887  ArII
+3350.9243  ArII
+3376.4359  ArII
+3388.5309  ArII
+3399.3335  FeI
+3404.3535  FeI
+3407.4585  FeI
+3413.1312  FeI
+3427.1192  FeI
+3443.8762  FeI
+3465.8603  FeI
+3475.4500  FeI    
+3476.7016  FeI
+3480.5055  ArII
+3490.5737  FeI
+3509.7785  ArII
+3519.9936  ArII
+3535.3196  ArII
+3541.0832  FeI
+3548.5144  ArII
+3559.5081  ArII
+3561.0304  ArII
+3565.3786  FeI
+3576.6156  ArII
+3581.1925  FeI
+3588.4407  ArII
+3608.8587  FeI
+3618.7676  FeI
+3631.4629  FeI
+3647.8424  FeI
+3679.9132  FeI
+3687.4564  FeI
+3705.5657  FeI
+3709.2459  FeI
+3718.2065  ArII
+3719.9346  FeI
+3722.5625  FeI
+3727.6187  FeI  
+3729.3087  ArII
+3733.3169  FeI
+3734.8636  FeI
+3737.1313  FeI
+3745.5608  FeI
+3748.2617  FeI
+3749.4847  FeI
+3758.2324  FeI
+3763.7885  FeI
+3767.1914  FeI
+3812.9641  FeI
+3815.8397  FeI
+3820.4251  FeI
+3824.4436  FeI
+3825.8805  FeI
+3827.8226  FeI
+3834.2222  FeI
+3856.3717  FeI
+3859.9114  FeI
+3868.5284  ArII
+3878.5730  FeI
+3886.2820  FeI
+3895.6558  FeI 
+3899.7073  FeI
+3902.9452  FeI
+3906.4794  FeI
+3920.2577  FeI
+3922.9115  FeI
+3925.7188  ArII
+3930.2962  FeI
+3946.0971  ArII
+3948.9789  ArI
+3969.2570  FeI
+3979.3559  ArII
+3994.7918  ArII
+4005.2414  FeI
+4033.8093  ArII
+4042.8937  ArII
+4044.4179  ArI
+4045.8130  FeI
+4052.9208  ArII
+4063.5939  FeI
+4103.9121  ArII
+4118.5442  FeI
+4131.7235  ArII
+4143.8688  FeI
+4158.5905  ArI
+4164.1795  ArI
+4198.3036  FeI
+4200.6745  ArI
+4216.1828  FeI
+4222.6373  FeI
+4237.2198  ArII
+4259.3619  ArI
+4271.7593  FeI
+4277.5282  ArII
+4294.1243  FeI
+4300.1008  ArI
+4307.9015  FeI
+4315.0837  FeI
+4325.7615  FeI
+4331.1995  ArII
+4333.5612  ArI
+4335.3379  ArI
+4337.0708  ArII
+4345.1680  ArII
+4348.0640  ArII
+4352.2049  ArII
+4362.0662  ArII
+4367.8316  ArII
+4375.9294  FeI
+4379.6668  ArII
+4383.5445  FeI
+4385.0566  ArII
+4400.9863  ArII
+4404.7499  FeI
+4415.1222  FeI
+4426.0011  ArII
+4427.3039  FeI
+4430.1890  ArII
+4433.8380  ArII 
+4439.4614  ArII
+4448.8792  ArII
+4461.6521  FeI
+4466.5508  FeI
+4474.7594  ArII
+4481.8107  ArII
+4489.7389  FeI
+4490.9816  ArII
+4498.5384  ArII
+4502.9268  ArII
+4510.7332  ArI
+4522.3230  ArI
+4528.6133  FeI
+4530.5523  FeI
+4545.0519  ArII
+4579.3495  ArII
+4589.8978  ArII
+4596.0967  ArI
+4598.7627  ArII
+4609.5673  ArII
+4628.4409  ArI
+4637.2328  ArII
+4647.4329  FeI
+4657.9012  ArII
+4702.3161  ArI
+4726.8683  ArII
+4732.0532  ArII
+4735.9058  ArII
+4764.8646  ArII
+4806.0205  ArII
+4847.8095  ArII
+4859.7406  FeI
+4879.8635  ArII
+4889.0422  ArII
+4891.4919  FeI
+4920.5018  FeI
+4933.2091  ArII
+4957.5966  FeI
+4965.0795  ArII
+4972.1597  ArII
+5006.1175  FeI
+5009.3344  ArII
+5012.0674  FeI
+5017.1628  ArII
+5051.6336  FeI
+5062.0371  ArII
+5083.3377  FeI
+5090.4951  ArII
+5110.3849  FeI
+5125.7654  ArII
+5141.7827  ArII
+5145.3083  ArII
+5162.2846  ArI
+5167.4873  FeI
+5171.5953  FeI
+5187.7462  ArI
+5194.9412  FeI
+5221.2710  ArI
+5227.1697  FeI
+5232.9394  FeI
+5266.5546  FeI
+5269.5366  FeI
+5283.6206  FeI
+5302.2989  FeI
+5324.1782  FeI
+5328.0376  FeI
+5341.0233  FeI
+5371.4892  FeI
+5397.1269  FeI
+5405.7741  FeI
+5415.1997  FeI
+5421.3517  ArI
+5424.0686  FeI
+5429.6955  FeI
+5434.5228  FeI
+5439.9891  ArI
+5446.8937  FeI
+5451.6520  ArI
+5455.6090  FeI
+5495.8738  ArI
+5514.3760  ArI
+5524.9570  ArI
+5558.7020  ArI
+5569.6177  FeI
+5577.6845  ArII
+5586.7553  FeI
+5606.7330  ArI
+5615.6436  FeI
+5648.6863  ArI
+5650.7043  ArI
+5681.9001  ArI
+5691.6612  ArII
+5739.5196  ArI
+5783.5360  ArI
+5786.5553  ArII
+5802.0798  ArI
+5812.7592  ArII
+5834.2633  ArI
+5860.3103  ArI
+5882.6242  ArI
+5888.5841  ArI
+5912.0853  ArI
+5916.5992  ArI
+5927.1258  ArI
+5928.8130  ArI
+5942.6686  ArI
+5949.2583  ArI
+5964.4723  ArI
+5968.3199  ArI
+5971.6008  ArI
+5987.3016  ArI
+5998.9987  ArI
+6005.7242  ArI
+6013.6777  ArI
+6025.1500  ArI
+6032.1274  ArI
+6043.2233  ArI
+6046.8977  ArI
+6052.7229  ArI
+6059.3725  ArI
+6081.2433  ArI
+6085.8797  ArI
+6090.7848  ArI
+6098.8031  ArI
+6105.6351  ArI
+6114.9234  ArII
+6123.3619  ArII
+6127.4160  ArI
+6145.4411  ArI
+6155.2385  ArI
+6165.1232  ArI
+6170.1740  ArII
+6172.2778  FeI
+6191.5583  ArII
+6201.1002  ArI
+6212.5031  ArI
+6215.9383  FeI
+6230.7260  ArII
+6243.1201  FeI
+6246.3172  ArI
+6248.4055  FeI
+6252.5537  FeI
+6296.8722  ArI
+6307.6570  ArII
+6324.4163  ArI
+6364.8937  ArI
+6369.5748  ArI
+6384.7169  FeI
+6399.9995  ArII
+6403.0128  FeI
+6411.6468  ArI
+6416.3071  ArII
+6437.6003  ArI
+6466.5526  ArII
+6483.0825  ArII
+6538.1120  ArI
+6604.8534  ArI
+6614.3475  ArII
+6620.9665  ArII
+6632.0837  ArI
+6638.2207  ArII
+6639.7403  ArII
+6643.6976  ArII
+6656.9386  ArI
+6660.6761  ArI
+6664.0510  ArI 
+6666.3588  ArII
+6677.2817  ArI
+6684.2929  ArII
+6719.2184  ArI
+6752.8335  ArI
+6766.6117  ArI
+6861.2688  ArII
+6871.2891  ArI
+6879.5824  ArI 
+6888.1742  ArI
+6937.6642  ArI
+6951.4776  ArI
+6965.4307  ArI
+7030.2514  ArI
+7067.2181  ArI
+7107.4778  ArI
+7125.8200  ArI 
+7147.0416  ArI
+7158.8387  ArI
+7206.9804  ArI
+7265.1724  ArI
+7272.9359  ArI
+7311.7159  ArI
+7316.0050  ArI 
+7353.2930  ArI 
+7372.1184  ArI
+7383.9805  ArI
+7392.9801  ArI
+7412.3368  ArI
+7425.2942  ArI
+7435.3683  ArI
+7471.1641  ArI
+7484.3267  ArI
+7503.8691  ArI
+7514.6518  ArI
+7589.3151  ArII
+7635.1060  ArI 
+7670.0575  ArI
+7798.5604  ArI
+7868.1946  ArI
+7891.0750  ArI 
+7916.4420  ArI
+7948.1764  ArI
+7948.1964  ArI
+8006.1567  ArI
+8014.7857  ArI
+8037.2183  ArI
+8046.1169  ArI
+8053.3085  ArI
+8066.6046  ArI
+8103.6931  ArI
+8115.3110  ArI
+8143.5050  ArI
+8203.4352  ArI
+8264.5225  ArI
+8327.0526  FeI
+8384.7240  ArI
+8387.7700  FeI
+8408.2096  ArI
+8424.6475  ArI
+8490.3065  ArI
+8521.4422  ArI
+8605.7762  ArI
+8620.4602  ArI
+8667.9442  ArI
+8688.6213  FeI
+8761.6862  ArI
+8799.0875  ArI 
+8962.1468  ArI
+9008.4636  ArII
+9017.5912  ArII
+9122.9674  ArI
+9194.6385  ArI
+9224.4992  ArI
+9291.5313  ArI
+9354.2198  ArI
+9508.4513  ArI
+9657.7863  ArI
+9784.5028  ArI
+10470.0535  ArI

specproc/calib_data/linelists/README

@@ -0,0 +1,79 @@
+This directory contains line lists which are used by IDENTIFY/REIDENTIFY.
+There may additional applications using these lists in the future.
+
+		       	       LINE LISTS
+                  (eg coordlist = linelists$henear.dat)
+
+      argon.dat -  Vacuum wavelengths of the infrared emission lines of argon.
+                   The second column lists relative intensities.  The data 
+                   are from "Wavelength Standards in the Infrared", K.N. Rao
+                   et al., 1966.
+ ctiohenear.dat -  HENEAR list used at CTIO
+   ctiohear.dat -  HEAR list used at CTIO
+       cuar.dat -  A linelist for the built-in comparison source for the KPNO
+		   Hydra instrument consisting of 6 CuAr hollow cathode
+		   lamps.  The identifications are from Coude Echelle
+		   spectra and a list from AAO (Schinckel, Phillips, and
+		   Hill). All wavelengths are from Norlen (Physica Scripta.
+		   Vol 8, 249-268, 1973) except for a few CuI lines from
+		   Striganov and Sventitskii (Tables of Spectral Lines of
+		   Neutral and Ionized Atoms, 1968).
+       fear.dat -  FeAr Hollow Cathode line list between 3,000A and 10,000A.
+		   The reference for this line list is "A CCD Atlas of
+		   Comparison Spectra: FeAr Hollow Cathode, 3000A - 10,000A"
+		   by D. Willmarth.  The atlas is available from the
+		   KPNO User Support Office.
+     henear.dat -  Selected list of HENEAR lines to be used for 
+		   KPNO IIDS/IRS reductions - this list is identical to 
+		   that in the KPNO mountain reduction software for these 
+		   instruments.  Source of wavelengths:  1982 MIT
+		   Wavelength Tables Vol. 2.  Multiplet numbers from
+		   Charlotte Moore's A Multiplet Table of Astrophysical
+		   Interest 1972.
+ henearhres.dat -  High resolution list of HENEAR lines covering the wavelength
+		   range 3300A - 11,100A.  See "A CCD Atlas of Comparison
+		   Spectra: He-Ne-Ar, 3300A - 11,100A" by Daryl Willmarth,
+		   April 1993.
+   idhenear.dat -  Extended list of HENEAR lines for general use.
+		   Source of wavelengths:  1982 MIT Wavelength Tables Vol. 2.
+		   Multiplet numbers from Charlotte Moore's A Multiplet Table
+		   of Astrophysical Interest 1972.
+    krypton.dat -  Vacuum wavelengths of the infrared emission lines of krypton.
+                   The second column lists relative intensities.  The data  
+                   are from "Wavelength Standards in the Infrared", K.N. Rao 
+                   et al., 1966.
+lowskylines.dat -  Rest (air) wavelengths of all the OH vibration-rotation
+                   lines in the sky spectrum, useful for low dispersion
+                   spectra - see "Sky Spectra at a Light-Polluted Site and
+                   Wavelength Zero Points", Osterbrock and Martel, UCO/LO
+                   Bulletin No. __ .
+    ohlines.dat -  Vacuum wavelengths from calculations of Chamberlain
+                   (lambda < 1.20microns) and laboratory observations of Hubbard
+                   and Brault using the Solar FTS (lambda > 1.2microns).
+                   The second column gives the observed intensity in kR
+                   (Steed and Baker 1979, Appl. Opt., 18, 3386) of observed
+                   atmospheric lines.
+   skylines.dat -  Night sky lines from various sources compiled by Don
+		   York.  See file header for comments.
+       thar.dat -  List of thorium-argon lines (3180 - 9665),
+                   A CCD Atlas of Comparison Spectra: Thorium-Argon Hollow
+                   Cathode 3180 A - 9665 A, revised Feb. 1992, Daryl Willmarth.
+vacidhenear.dat -  The idhenear.dat list converted to vacuum wavelengths
+                   using the equation: (n-1) x 10**8 = 8342.13 + 2406030
+                   (130 - sigma**2)**-1 + 15997(38.9 - sigma**2)**-1
+                   where sigma = 1/lambda(air) and air at T=15C, P=760mmHg, and
+		   no water vapour. (See B. Edlen, 1966
+                   Metrologia, Vol. 2, p. 71).
+    vacthar.dat -  The thar.dat list converted to vacuum wavelengths
+                   using the equation: (n-1) x 10**8 = 8342.13 + 2406030
+                   (130 - sigma**2)**-1 + 15997(38.9 - sigma**2)**-1
+                   where sigma = 1/lambda(air) and air at T=15C, P=760mmHg, and
+		   no water vapour. (See B. Edlen, 1966
+                   Metrologia, Vol. 2, p. 71).
+      xenon.dat -  Vacuum wavelengths of the infrared emission lines of xenon. 
+                   The second column lists relative intensities.  The data  
+                   are from "Wavelength Standards in the Infrared", K.N. Rao 
+                   et al., 1966.
+
+    thorium.dat -  Obsolete and will disappear in the future.  Use thar.dat.
+ vacthorium.dat -  Obsolete and will disappear in the furture.  Use vacthar.dat.

specproc/calib_data/linelists/airvac.cl

@@ -0,0 +1,61 @@
+# AIRVAC -- Convert dispersion coordinates to air or vacuum values.
+# The index of refraction formulas used are from Allen's Astrophysical
+# Quantities (1973).
+#
+# This task takes in a file of wavelengths in Angstroms and converts between
+# air and vacuum to an output file of wavelengths in Angstroms.  It will
+# pass any comments and data after the first wavelength column to the
+# output.
+#
+# To install and use copy the script to your IRAF home directory with the
+# name airvac.cl.  Then interactively (for use during the current IRAF session)
+# or in your loginuser.cl (for use during future IRAF sessions) enter
+# "task airvac=home$airvac.cl".
+
+procedure airvac (input, output)
+
+file	input		    {prompt="Input file of wavelengths in Angstroms"}
+file	output		    {prompt="Output file of wavelengths in Angstroms"}
+string	type = "air2vac"    {prompt="Conversion (air2vac|vac2air)",
+			 	enum = "air2vac|vac2air"}
+real	t = 15.		    {prompt="Temperature (C)"}
+real	p = 760.	    {prompt="Pressure (mmHg)"}
+real	f = 4.		    {prompt="Water vapour pressure (mmHg)"}
+
+struct	*inlist
+
+begin
+	file	in, out
+	struct	label
+	int	n
+	real	a, b, w
+
+	in = input
+	out = output
+
+	printf ("# airvac (%s, %s, type=%s, t=%.6g, p=%.6g, f=%.6g)\n",
+	    in, out, type, t, p, f, > out)
+
+	inlist = input
+	while (fscan (inlist, line) != EOF) {
+	    n = fscan (line, w, label)
+	    if (n == 0) {
+		print (line, >> out)
+		next
+	    }
+
+	    b = (10000. / w) ** 2
+	    a = 64.328 + 29498.1 / (146 - b) + 255.4 / (41 - b)
+	    a = a * p * (1 + (1.049 - 0.0157 * t) * 1e-6 * p) /
+		(720.883 * (1 + 0.003661 * t))
+	    a = a - (0.0624 - 0.000680 * b) / (1 + 0.003661 * t) * f
+	    a = 1 + a / 1e6
+	    if (type == "air2vac")
+		w = a * w
+	    else if (type == "vac2air")
+		w = w / a
+
+	    print (w, label, >> out)
+	}
+	inlist = ""
+end

specproc/calib_data/linelists/argon.dat

@@ -0,0 +1,161 @@
+# units Angstroms
+11081.9 10   
+11109.5 3   
+11396.8 8   
+11445. 12   
+11470.7 6   
+11491.2 120   
+11583.5 1   
+11671.9 200   
+11690.8 1   
+11722.7 10   
+11736.4 9   
+11887.7 4   
+11899.9 1   
+11946.6 12   
+11947.1 B   
+12029.9 2   
+12115.6 150   
+12143. 30   
+12154.7 2   
+12346.8 30   
+12359.7 10   
+12406.2 100   
+12442.7 300   
+12459.5 100   
+12491.1 200   
+12557.7 2   
+12625.1 2   
+12705.7 100   
+12736.9 30   
+12749.7 12   
+12806.2 200   
+12936.7 40   
+12960.2 500   
+13011.8 200   
+13032. 2   
+13217.6 200   
+13231.7 200   
+13234.5 200   
+13276.3 500   
+13305.9 4   
+13316.8 800   
+13333.8 6   
+13370.8 1000   
+13410.2 100   
+13503.1 30   
+13507.9 1000   
+13547.9 8   
+13577.3 12   
+13603. 40   
+13626.4 400   
+13682.3 200   
+13722.3 1000   
+13829.5 B   
+13832.1 9   
+13911.3 8   
+13914.4 50   
+14097.5 150   
+14253.1 8   
+14260.8 13   
+14599.7 11   
+14600.5 B   
+14638.4 30   
+14654.3 30   
+14697.4 4   
+14743.2 5   
+15050.6 100   
+15176.8 25   
+15306.1 40   
+15333.5 9   
+15353. 7   
+15357.3 3   
+15406.8 6   
+15904. 10   
+15993.9 25   
+16127.1 1   
+16184.4 4   
+16441.1 13   
+16524.4 30   
+16553.8 8   
+16744.6 9   
+16945.2 500   
+17449.7 11   
+17450. B   
+17828.9 5   
+17919.6 40   
+18423.2 2   
+18432.8 10   
+18433.4 B   
+18434.5 B   
+19822.9 5   
+19971.2 4   
+20322.6 2   
+20621.9 50   
+20652.8 2   
+20739.3 2   
+20741. B   
+20816.7 2   
+20991.8 30   
+21338.7 1   
+21540.1 8   
+22045.6 1   
+22083.2 8   
+23139.5 20   
+23851.5 1   
+23973.1 20   
+25132.1 25   
+25491.6 3   
+25512.2 8   
+25668. 10   
+26843. 4   
+26917.1 40   
+27233. 3   
+28202.4 30   
+28246. 30   
+28321.8 25   
+28435. 1   
+28538.4 3   
+28620.2 200   
+28697.9 50   
+28712.8 5   
+28782.9 500   
+28843.1 100   
+28989.2 2   
+29108.5 3   
+29134.8 50   
+29262.9 4   
+29280.7 20   
+29566.3 3   
+29796.8 250   
+30462.1 4   
+30552.8 2   
+30996.2 10   
+31333. 100   
+31727.3 5   
+32256.3 3   
+32305.9 1   
+32333.9 5   
+32888.6 4   
+33078.8 15   
+33148.4 15   
+33293.4 10   
+34960.5 1   
+36220.9 8   
+36312.4 3   
+36390.5 2   
+36395. 2   
+36492. 10   
+37013.6 2   
+37085.9 5   
+37143.5 3   
+37186.2 1   
+37261.2 2   
+38120.7 3   
+38331.2 1   
+39664.3 1   
+39670.7 1   
+40080.4 2   
+40164.8 1   
+40169.7 1   
+40433.1 3