Spacelab 0.28.0__py3-none-any.whl

spacelab/static/assets/spatialdataExpression.worker-D4W_OHS3.js

@@ -0,0 +1,4 @@
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order.`),{imageName:n,shapesName:r,shapesFiles:s,geometryColumn:a,shapesIndexColumn:c,nShapes:l,tableName:p.mode==="none"?null:A,nObs:u,join:p,nCells:p.mode==="none"?l:u}},ai=(e,t)=>{let n=bt.get(e);n||(n=new Map,bt.set(e,n));const r=JSON.stringify(t??{});let i=n.get(r);return i||(i=oi(e,t),i.catch(()=>n.delete(r)),n.set(r,i)),i},ci=e=>{let t=0,n=null,r=null;return{add:(o,a)=>{n||(t=o.length,n=new Float64Array(t),r=new Float64Array(t));let c=0,l=1;if(e){let A=0,u=0,h=0;for(let w=0;w<t;w++){const p=o[w];Number.isFinite(p)&&(A+=p,u+=p*p,h+=1)}if(h>0){c=A/h;const w=u/h-c*c;l=w>0?Math.sqrt(w):1}}for(let A=0;A<t;A++){const u=o[A];if(Number.isFinite(u)){const h=e?(u-c)/l:u;n[A]+=a*h,r[A]+=a}}},result:()=>{const o=new Float32Array(t);let a=1/0,c=-1/0;for(let l=0;l<t;l++){const A=r[l],u=A>0?n[l]/A:NaN;o[l]=u,Number.isFinite(u)&&(u<a&&(a=u),u>c&&(c=u))}return{scoreValues:o,scoreRange:a<=c?[a,c]:[0,1]}}}},fi=(e,t,n)=>{const r=[],i=[];for(const s of t){const o=e.indexOf(s);if(o===-1){r.push(s);continue}const a=n[s];i.push({col:o,weight:Number.isFinite(a)?a:1})}return{resolved:i,missingGenes:r}},x=self,St=16,li=4,U=new Map;let J=null,Qe=null;const Nt=async(e,t,n)=>Ut((await oe(e,[me(t,n)])).data),ui=async()=>{const{rootUrl:e,uuid:t,elements:n}=Qe,r=await ti(e,t,n),i=(await ai(r,n))?.tableName;if(!i)throw new Error("No table joined to the cell outlines; expression is unavailable");const s=En(new Vt(`${r.url}/tables/${i}`)),o=await Kn(s.resolve("var")),a=await T(s.resolve("X")),c=a.attrs["encoding-type"];if(a instanceof L)return{genes:o,columns:C=>Promise.all(C.map(async B=>Float32Array.from((await oe(a,[null,B])).data)))};if(c!=="csc_matrix")throw new Error(`Table '${i}' X is ${String(c)}; expression needs a dense or CSC X (see data/prep_spatialdata.py)`);const[l]=a.attrs.shape,A=s.resolve("X"),[u,h,w]=await Promise.all(["indptr","indices","data"].map(C=>T(A.resolve(C),{kind:"array"}))),p=Ut((await oe(u)).data);return{genes:o,columns:C=>Promise.all(C.map(async B=>{const y=new Float32Array(l),[d,S]=[p[B],p[B+1]];if(S===d)return y;const[_,N]=await Promise.all([Nt(h,d,S),Nt(w,d,S)]);for(let F=0;F<_.length;F++)y[_[F]]+=N[F];return y}))}},Ai=()=>(J||(J=ui(),J.catch(()=>{J=null})),J);x.onmessage=async e=>{const t=e.data||{};try{if(t.type==="INIT"){Qe={rootUrl:t.rootUrl,uuid:t.uuid,elements:t.elements};return}if(!Qe)return;const n=await Ai();if(t.type==="COLUMN"){const r=n.genes.indexOf(t.gene);if(r===-1){x.postMessage({type:"COLUMN_DONE",requestId:t.requestId,values:null});return}let i=U.get(r);for(i?U.delete(r):[i]=await n.columns([r]),U.set(r,i);U.size>li;)U.delete(U.keys().next().value);const s=i.slice();x.postMessage({type:"COLUMN_DONE",requestId:t.requestId,values:s},[s.buffer]);return}if(t.type==="SCORES"){const{resolved:r,missingGenes:i}=fi(n.genes,t.genes,t.weights);if(r.length===0){const c=new Float32Array(0);x.postMessage({type:"SCORES_DONE",requestId:t.requestId,scoreValues:c,scoreRange:[0,1],missingGenes:i});return}const s=ci(!!t.useZScore);for(let c=0;c<r.length;c+=St){const l=r.slice(c,c+St);(await n.columns(l.map(u=>u.col))).forEach((u,h)=>{s.add(u,l[h].weight)})}const{scoreValues:o,scoreRange:a}=s.result();x.postMessage({type:"SCORES_DONE",requestId:t.requestId,scoreValues:o,scoreRange:a,missingGenes:i},[o.buffer])}}catch(n){console.error(n),x.postMessage({type:"ERROR",requestId:t.requestId,message:n instanceof Error?n.message:String(n)})}};
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