SankeyExcelParser 1.0.0b0__py3-none-any.whl
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- SankeyExcelParser/__init__.py +0 -0
- SankeyExcelParser/io_excel.py +1867 -0
- SankeyExcelParser/io_excel_constants.py +811 -0
- SankeyExcelParser/sankey.py +3138 -0
- SankeyExcelParser/sankey_utils/__init__.py +0 -0
- SankeyExcelParser/sankey_utils/data.py +1118 -0
- SankeyExcelParser/sankey_utils/excel_source.py +31 -0
- SankeyExcelParser/sankey_utils/flux.py +344 -0
- SankeyExcelParser/sankey_utils/functions.py +278 -0
- SankeyExcelParser/sankey_utils/node.py +340 -0
- SankeyExcelParser/sankey_utils/protos/__init__.py +0 -0
- SankeyExcelParser/sankey_utils/protos/flux.py +84 -0
- SankeyExcelParser/sankey_utils/protos/node.py +386 -0
- SankeyExcelParser/sankey_utils/protos/sankey_object.py +135 -0
- SankeyExcelParser/sankey_utils/protos/tag_group.py +95 -0
- SankeyExcelParser/sankey_utils/sankey_object.py +165 -0
- SankeyExcelParser/sankey_utils/table_object.py +37 -0
- SankeyExcelParser/sankey_utils/tag.py +95 -0
- SankeyExcelParser/sankey_utils/tag_group.py +206 -0
- SankeyExcelParser/su_trace.py +239 -0
- SankeyExcelParser/tests/integration/__init__.py +0 -0
- SankeyExcelParser/tests/integration/test_base.py +356 -0
- SankeyExcelParser/tests/integration/test_run_check_input.py +100 -0
- SankeyExcelParser/tests/integration/test_run_conversions.py +96 -0
- SankeyExcelParser/tests/integration/test_run_load_input.py +94 -0
- SankeyExcelParser/tests/unit/__init__.py +0 -0
- SankeyExcelParser-1.0.0b0.data/scripts/run_parse_and_write_excel.py +155 -0
- SankeyExcelParser-1.0.0b0.data/scripts/run_parse_excel.py +115 -0
- SankeyExcelParser-1.0.0b0.dist-info/METADATA +113 -0
- SankeyExcelParser-1.0.0b0.dist-info/RECORD +32 -0
- SankeyExcelParser-1.0.0b0.dist-info/WHEEL +5 -0
- SankeyExcelParser-1.0.0b0.dist-info/top_level.txt +1 -0
@@ -0,0 +1,386 @@
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"""
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Author : Vincent LE DOZE
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Date : 31/05/23
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This file contains descriptions for proto Node class
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"""
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# External libs ---------------------------------------------------------------
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import re
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# Local modules -----------------------------------------------------
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from SankeyExcelParser.sankey_utils.sankey_object import SankeyObject
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from SankeyExcelParser.sankey_utils.functions import _stdStr, _convertColorToHex
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# CLASS ----------------------------------------------------------------------------
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LOCALISATION_OPTIONS = {
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'Local': ['locale?', 'domestique'],
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'Echange': ['echanges?']}
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class _ProtoNodeUnit(object):
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"""
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Define unit for a data object
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"""
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def __init__(
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self,
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**kwargs
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):
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self._natural_unit = None
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self._equivalent_unit = None
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self._equivalent_to_natural = None
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self._natural_to_equivalent = None
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self._other_conversions = {}
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self.update(**kwargs)
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def update(
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self,
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**kwargs
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):
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for key, value in kwargs.items():
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setattr(self, key, value)
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@property
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def natural_unit(self):
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return self._natural_unit
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@natural_unit.setter
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def natural_unit(self, _):
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# None case
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if _ is None:
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self._natural_unit = None
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return
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# Real affectation
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try:
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self._natural_unit = str(_)
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except Exception:
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pass
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@property
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def equivalent_unit(self):
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return self._equivalent_unit
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@property
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def equivalent_to_natural(self):
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return self._equivalent_to_natural
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@property
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def natural_to_equivalent(self):
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return self._natural_to_equivalent
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@natural_to_equivalent.setter
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def natural_to_equivalent(self, _):
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# None case
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if _ is None:
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self._natural_to_equivalent = None
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return
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# Real affectation
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try:
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self._natural_to_equivalent = float(_)
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# TODO: div 0 protection ? Or enough with try ?
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self._equivalent_to_natural = (1.0/self._natural_to_equivalent)
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except Exception:
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pass
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@property
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def other_conversions(self):
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return self._other_conversions
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def add_other_conversion(self, name, value):
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try:
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f_value = float(value)
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s_name = str(name)
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# NAN protection
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if (f_value != f_value):
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return
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self._other_conversions[s_name] = f_value
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except Exception:
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pass
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class _ProtoNode(SankeyObject):
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"""
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Define a prototype for node object.
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Does nothing except defining attributes.
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Inherits from `SankeyObject`
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Parameters
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----------
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:param id: Node id (standardized)
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:type id: str
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:param name: Node name (not standardized, as set by the user)
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:type name: str
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:param level: Parenthood level of the node.
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1=Node without parents,
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2+: Node with parents, ...
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:type level: int
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:param type: parenthood relationships
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'SR': Single root,
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'PR': parent root,
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'BC': base child,
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'PC': parent child
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:type level: str
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:param parents: Lists the parent nodes of the 'self' node.
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:type parents: list [Node, ...]
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:param children_grps: Lists the groups of child nodes of the 'self' node.
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:type children_grps: list [list[Node, ...], ...]
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:param input_flux: List of all flux that arrive to this node.
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:type input_flux: list [Flux, ...]
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:param output_flux: List of all flux that depart from this node.
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:type output_flux: list [Flux, ...]
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:param mat_balance: Do we respect or not of the matter balance.
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1: matter balance is respected,
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0: not respected.
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:type mat_balance: int
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:param color: Color applied to the node on application
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:type color: str
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:param definition: Node definition
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:type definition: str
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"""
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def __init__(
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self,
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name: str,
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level: int,
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**kwargs
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):
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# Init super
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SankeyObject.__init__(self)
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# Id : keep only lower alphanumeric + spaces replaced with "_"
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self._id = re.sub(r'[^a-z0-9 ]', '', _stdStr(name))\
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.title().replace(' ', '')
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# Init default value
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self._name = name
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self._level = level
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# Parents & children
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self._type = None
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self._parents = []
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self._children_grps = [[]]
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self._create_new_children_grp = False
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# Flux
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self._input_flux = []
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self._output_flux = []
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# MFA
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self._unit = {}
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self._mat_balance = None
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# Display on OpenSankey
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self._color = None
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self._definition = None
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@property
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def id(self):
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return self._id
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@property
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def name(self):
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return self._name
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@property
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def level(self):
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return self._level
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@level.setter
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def level(self, _):
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try:
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self._level = max(1, int(_))
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except Exception:
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pass
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@property
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def type(self):
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return self._type
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@type.setter
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def type(self, _):
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if isinstance(_, str):
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upper_ = _.upper()
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if upper_ in ['SR', 'PR', 'BC', 'PC']:
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self._type = upper_
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@property
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def mat_balance(self):
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return self._mat_balance
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@mat_balance.setter
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def mat_balance(self, _):
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try:
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self._mat_balance = int(_)
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except Exception:
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pass
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@property
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def color(self):
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return self._color
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@property
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def color_in_hex(self):
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return _convertColorToHex(self._color, default_color='#808080') # Grey by default
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@color.setter
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def color(self, _):
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if type(_) is str:
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if len(_) > 0:
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self._color = _
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@property
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def definition(self):
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return self._definition
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@definition.setter
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def definition(self, _):
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if type(_) is str:
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self._definition = None
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if len(_) > 0:
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self._definition = _
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return
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if _ is None:
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self._definition = None
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@property
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def parents(self):
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return self._parents.copy()
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def get_all_parents(self, limit=-1):
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# if limit < 0, output = all existing parent, grand-parents, grand-grand-parents, etc...
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if limit < 0:
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if len(self._parents) == 0:
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return []
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else:
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all_parents = self._parents.copy() # Beware modifying references
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for parent in self._parents:
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all_parents += parent.get_all_parents()
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return all_parents
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# if limit = 0, output = current node parents
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# if limit = 1, output = current node parents + grand-parents
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# if limit = 2, outpur = current node parents + grand-parents + grand-grand-parents
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# etc...
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elif limit == 0:
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return self._parents
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else:
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all_parents = self._parents.copy()
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for parent in self._parents:
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all_parents += parent.get_all_parents(limit=limit-1)
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return all_parents
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@property
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def children_grps(self):
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return [_.copy() for _ in self._children_grps]
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def get_brothers_grps(self):
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"""
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Return dict of list of brothers nodes, ie nodes that share the same parent as self.
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Brothers are referenced by their shared parents
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Returns
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-------
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:return: Groups of existing brothers per parents
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:rtype: list[ list[bro1, bro2, ...], ... ]
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"""
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brothers = []
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# No parents -> No brothers
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if len(self.parents) == 0:
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return brothers
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# There are parents
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for parent in self.parents:
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for grp in parent.children_grps:
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# Parent can have children grp where self does not belong
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if self in grp:
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# Remove self from brothers
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grp.remove(self) # Safe : With children_grps setter, grp is a copy
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brothers.append(grp)
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return brothers
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@property
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def input_flux(self):
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return self._input_flux.copy()
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@property
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def output_flux(self):
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return self._output_flux.copy()
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@property
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def unit(self):
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return self._unit
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@property
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def has_unit(self):
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return len(self._unit) > 0
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@property
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def unit_localisation(self):
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return list(self._unit.keys())
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def get_natural_unit(self, localisation=None):
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try:
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if localisation is None:
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return self._unit[self.unit_localisation[0]].natural_unit
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else:
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return self._unit[localisation].natural_unit
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except Exception:
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pass
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return None
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def add_natural_unit(self, _, localisation='Local'):
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if localisation is not None:
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if localisation in self._unit.keys():
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self._unit[localisation].natural_unit = _
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else:
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self._unit[localisation] = _ProtoNodeUnit(natural_unit=_)
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def get_factor(self, localisation=None):
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try:
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if localisation is None:
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return self._unit[self.unit_localisation[0]].natural_to_equivalent
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else:
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return self._unit[localisation].natural_to_equivalent
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except Exception:
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pass
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return None
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def add_factor(self, _, localisation='Local'):
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if localisation is not None:
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if localisation in self._unit.keys():
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self._unit[localisation].natural_to_equivalent = _
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else:
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self._unit[localisation] = _ProtoNodeUnit(natural_to_equivalent=_)
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def get_other_factors(self, localisation=None):
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try:
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if localisation is None:
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return self._unit[self.unit_localisation[0]].other_conversions
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else:
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return self._unit[localisation].other_conversions
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except Exception:
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pass
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return None
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def add_other_factor(self, name, factor, localisation='Local'):
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if localisation is not None:
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if localisation not in self._unit.keys():
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self._unit[localisation] = _ProtoNodeUnit()
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self._unit[localisation].add_other_conversion(name, factor)
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def match_localisation(self, _):
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try:
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localisation = str(_)
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for localisation_option, localisation_res in LOCALISATION_OPTIONS.items():
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381
|
+
for localisation_re in localisation_res:
|
382
|
+
if re.fullmatch(localisation_re, _stdStr(localisation)):
|
383
|
+
return localisation_option
|
384
|
+
except Exception:
|
385
|
+
pass
|
386
|
+
return None
|
@@ -0,0 +1,135 @@
|
|
1
|
+
"""
|
2
|
+
Author : Vincent LE DOZE
|
3
|
+
Date : 31/05/23
|
4
|
+
|
5
|
+
This file contains descriptions for sankey proto class
|
6
|
+
|
7
|
+
"""
|
8
|
+
|
9
|
+
|
10
|
+
# Local modules -----------------------------------------------------
|
11
|
+
from SankeyExcelParser.sankey_utils.table_object import TableObject
|
12
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+
|
13
|
+
|
14
|
+
# CLASS ----------------------------------------------------------------------------
|
15
|
+
class _ProtoToolTip(object):
|
16
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+
"""
|
17
|
+
Proto class for Tooltip
|
18
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+
|
19
|
+
Parameters
|
20
|
+
----------
|
21
|
+
:param name: Tooltip name
|
22
|
+
:type name: str
|
23
|
+
|
24
|
+
:param description: Tooltip description
|
25
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+
:type description: str
|
26
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+
|
27
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+
:param content: Tooltip content
|
28
|
+
:type content: str
|
29
|
+
"""
|
30
|
+
def __init__(
|
31
|
+
self,
|
32
|
+
**kwargs
|
33
|
+
):
|
34
|
+
self._name = None
|
35
|
+
self._description = None
|
36
|
+
self._content = None
|
37
|
+
self.update(**kwargs)
|
38
|
+
|
39
|
+
def update(
|
40
|
+
self,
|
41
|
+
**kwargs
|
42
|
+
):
|
43
|
+
for key, value in kwargs.items():
|
44
|
+
setattr(self, key, value)
|
45
|
+
|
46
|
+
@property
|
47
|
+
def name(self):
|
48
|
+
return self._name
|
49
|
+
|
50
|
+
@name.setter
|
51
|
+
def name(self, _):
|
52
|
+
# None case
|
53
|
+
if _ is None:
|
54
|
+
self._name = None
|
55
|
+
return
|
56
|
+
# Real affectation
|
57
|
+
try:
|
58
|
+
self._name = str(_)
|
59
|
+
except Exception:
|
60
|
+
pass
|
61
|
+
|
62
|
+
@property
|
63
|
+
def description(self):
|
64
|
+
return self._description
|
65
|
+
|
66
|
+
@description.setter
|
67
|
+
def description(self, _):
|
68
|
+
# None case
|
69
|
+
if _ is None:
|
70
|
+
self._description = None
|
71
|
+
return
|
72
|
+
# Real affectation
|
73
|
+
try:
|
74
|
+
self._description = str(_)
|
75
|
+
except Exception:
|
76
|
+
pass
|
77
|
+
|
78
|
+
@property
|
79
|
+
def content(self):
|
80
|
+
return self._content
|
81
|
+
|
82
|
+
@content.setter
|
83
|
+
def content(self, _):
|
84
|
+
# None case
|
85
|
+
if _ is None:
|
86
|
+
self._content = None
|
87
|
+
return
|
88
|
+
# Real affectation
|
89
|
+
try:
|
90
|
+
self._content = str(_)
|
91
|
+
except Exception:
|
92
|
+
pass
|
93
|
+
|
94
|
+
|
95
|
+
class _ProtoSankeyObject(TableObject):
|
96
|
+
"""
|
97
|
+
Proto class for SankeyObject.
|
98
|
+
Define a generic sankey object.
|
99
|
+
herits from TableObject.
|
100
|
+
|
101
|
+
Parameters
|
102
|
+
----------
|
103
|
+
:param tags: List of tags of this object.
|
104
|
+
:type tags: list [_ProtoTag, ...]
|
105
|
+
"""
|
106
|
+
|
107
|
+
def __init__(self):
|
108
|
+
# Init parent class
|
109
|
+
TableObject.__init__(self)
|
110
|
+
# Init attributes
|
111
|
+
self._tags = []
|
112
|
+
self._taggs = []
|
113
|
+
# List of tooltips
|
114
|
+
self._tooltips = {}
|
115
|
+
|
116
|
+
@property
|
117
|
+
def tags(self):
|
118
|
+
return self._tags
|
119
|
+
|
120
|
+
@property
|
121
|
+
def taggs(self):
|
122
|
+
return self._taggs
|
123
|
+
|
124
|
+
@property
|
125
|
+
def tooltips(self):
|
126
|
+
return self._tooltips
|
127
|
+
|
128
|
+
def add_tooltip(self, name, description, content):
|
129
|
+
self._tooltips[name] = _ProtoToolTip(
|
130
|
+
name=name,
|
131
|
+
description=description,
|
132
|
+
content=content)
|
133
|
+
|
134
|
+
def update_tooltip(self, name, **kwargs):
|
135
|
+
self._tooltips[name].update(**kwargs)
|
@@ -0,0 +1,95 @@
|
|
1
|
+
"""
|
2
|
+
Author : Vincent LE DOZE
|
3
|
+
Date : 31/05/23
|
4
|
+
|
5
|
+
This file contains descriptions for proto TagGroup class
|
6
|
+
|
7
|
+
"""
|
8
|
+
|
9
|
+
# Local modules -----------------------------------------------------
|
10
|
+
from SankeyExcelParser.sankey_utils.table_object import TableObject
|
11
|
+
from SankeyExcelParser.sankey_utils.functions import _stdStr
|
12
|
+
|
13
|
+
|
14
|
+
# CLASS ----------------------------------------------------------------------------
|
15
|
+
class _ProtoTagGroup(TableObject):
|
16
|
+
"""
|
17
|
+
Proto class for TagGroup
|
18
|
+
Define a Tag Group object.
|
19
|
+
|
20
|
+
Parameters
|
21
|
+
----------
|
22
|
+
:param name: Name of the groupe (standardized)
|
23
|
+
:type name: str
|
24
|
+
|
25
|
+
:param name_unformatted: Name of the groupe (not standardized, as written by the user)
|
26
|
+
:type name_unformatted: str
|
27
|
+
|
28
|
+
:param tags: All tags contained by the group as dictionnary, with standardized tags name as entries.
|
29
|
+
:type tags: dict = {str: Tag, ...}
|
30
|
+
|
31
|
+
:param is_palette: Is the tag group a palette.
|
32
|
+
:type is_palette: int
|
33
|
+
|
34
|
+
:param colormap: Color map for tags colors.
|
35
|
+
:type colormap: str
|
36
|
+
|
37
|
+
:param color: Colors for each tags.
|
38
|
+
:type color: str
|
39
|
+
"""
|
40
|
+
|
41
|
+
def __init__(
|
42
|
+
self,
|
43
|
+
name: str,
|
44
|
+
taggtype: str
|
45
|
+
):
|
46
|
+
# Init parent class
|
47
|
+
TableObject.__init__(self)
|
48
|
+
# Init attributes
|
49
|
+
self._name = _stdStr(name)
|
50
|
+
self._name_unformatted = name
|
51
|
+
self._type = taggtype
|
52
|
+
self._tags = {}
|
53
|
+
self._anti_tags = None
|
54
|
+
self._antagonists_taggs = []
|
55
|
+
self._is_palette = None
|
56
|
+
self._colormap = None
|
57
|
+
|
58
|
+
@property
|
59
|
+
def name(self):
|
60
|
+
return self._name
|
61
|
+
|
62
|
+
@property
|
63
|
+
def name_unformatted(self):
|
64
|
+
return self._name_unformatted
|
65
|
+
|
66
|
+
@property
|
67
|
+
def type(self):
|
68
|
+
return self._type
|
69
|
+
|
70
|
+
@property
|
71
|
+
def is_palette(self):
|
72
|
+
return self._is_palette
|
73
|
+
|
74
|
+
@is_palette.setter
|
75
|
+
def is_palette(self, _):
|
76
|
+
try:
|
77
|
+
self._is_palette = int(_)
|
78
|
+
except Exception:
|
79
|
+
pass
|
80
|
+
|
81
|
+
@property
|
82
|
+
def has_palette(self):
|
83
|
+
try:
|
84
|
+
return (self._is_palette > 0)
|
85
|
+
except Exception:
|
86
|
+
return False
|
87
|
+
|
88
|
+
@property
|
89
|
+
def colormap(self):
|
90
|
+
return self._colormap
|
91
|
+
|
92
|
+
@colormap.setter
|
93
|
+
def colormap(self, _):
|
94
|
+
if type(_) is str:
|
95
|
+
self._colormap = _
|