SURE-tools 2.2.0__py3-none-any.whl → 2.2.1__py3-none-any.whl

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Files changed (8) hide show
  1. SURE/DensityFlow.py +1 -1
  2. SURE/flow/flow_stats.py +12 -0
  3. {sure_tools-2.2.0.dist-info → sure_tools-2.2.1.dist-info}/METADATA +1 -1
  4. {sure_tools-2.2.0.dist-info → sure_tools-2.2.1.dist-info}/RECORD +8 -8
  5. {sure_tools-2.2.0.dist-info → sure_tools-2.2.1.dist-info}/WHEEL +0 -0
  6. {sure_tools-2.2.0.dist-info → sure_tools-2.2.1.dist-info}/entry_points.txt +0 -0
  7. {sure_tools-2.2.0.dist-info → sure_tools-2.2.1.dist-info}/licenses/LICENSE +0 -0
  8. {sure_tools-2.2.0.dist-info → sure_tools-2.2.1.dist-info}/top_level.txt +0 -0
SURE/DensityFlow.py CHANGED
@@ -970,7 +970,7 @@ class DensityFlow(nn.Module):
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  us = None,
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  ys = None,
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  zs = None,
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- num_epochs: int = 200,
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+ num_epochs: int = 500,
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  learning_rate: float = 0.0001,
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  batch_size: int = 256,
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  algo: Literal['adam','rmsprop','adamw'] = 'adam',
SURE/flow/flow_stats.py CHANGED
@@ -41,6 +41,18 @@ class VectorFieldEval:
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  divergence[np.isnan(divergence)] = 0
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  return divergence
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+
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+ def movement_stats(self,vectors):
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+ return calculate_movement_stats(vectors)
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+
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+ def direction_stats(self, vectors):
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+ return calculate_direction_stats(vectors)
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+
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+ def movement_energy(self, vectors, masses=None):
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+ return calculate_movement_energy(vectors, masses)
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+
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+ def movement_divergence(self, positions, vectors):
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+ return calculate_movement_divergence(positions, vectors)
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  def calculate_movement_stats(vectors):
{sure_tools-2.2.0.dist-info → sure_tools-2.2.1.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.2.0
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+ Version: 2.2.1
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.2.0.dist-info → sure_tools-2.2.1.dist-info}/RECORD RENAMED
@@ -1,4 +1,4 @@
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- SURE/DensityFlow.py,sha256=ORpsfsY4TBWZUz0ZIUvmMtEtk_6-e6hUtqRsXkhy5Cw,54677
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+ SURE/DensityFlow.py,sha256=oav7crHuieXixI3Ru8uv6Sx1780kOL4_-2qwjVptVJw,54677
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  SURE/PerturbFlow.py,sha256=kVpEdVgW_AGvvv7d1KnnBydx_hGfpXUXmFg4t4dPlwY,54677
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  SURE/SURE.py,sha256=g8EhovBxjfpbVJA0AkmVkQ_ZW_JFc8TtkTCg8FCybV4,47750
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  SURE/__init__.py,sha256=NVp22RCHrhSwHNMomABC-eftoCYvt7vV1XOzim-UZHE,293
@@ -10,7 +10,7 @@ SURE/atac/utils.py,sha256=m4NYwpy9O5T1pXTzgCOCcmlwrC6GTi-cQ5sm2wZu2O8,4354
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  SURE/codebook/__init__.py,sha256=2T5gjp8JIaBayrXAnOJYSebQHsWprOs87difpR1OPNw,243
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  SURE/codebook/codebook.py,sha256=ZlN6gRX9Gj2D2u3P5KeOsbZri0MoMAiJo9lNeL-MK-I,17117
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  SURE/flow/__init__.py,sha256=rsAjYsh1xVIrxBCuwOE0Q_6N5th1wBgjJceV0ABPG3c,183
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- SURE/flow/flow_stats.py,sha256=_pF7m4-87SKlCHVtVmx3LG2bAGVXOnAfEgMzLhLx4Io,10910
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+ SURE/flow/flow_stats.py,sha256=6SzNMT59WRFRP1nC6bvpBPF7BugWnkIS_DSlr4S-Ez0,11338
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  SURE/flow/plot_quiver.py,sha256=UbmuScUcgbQHeMmjKmgqxjrIjHhiHx0VWct16UMMwuE,8110
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  SURE/perturb/__init__.py,sha256=8TP1dSUhXiZzKpFebHZmm8XMMGbUz_OfQ10xu-6uPPY,43
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  SURE/perturb/perturb.py,sha256=1iSsCePcwkA2CyM1nCdq_G8gogUNjhMH0BfhhvhpJQk,5037
@@ -18,9 +18,9 @@ SURE/utils/__init__.py,sha256=YF5jB-PAHJQ40OlcZ7BCZbsN2q1JKuPT6EppilRXQqM,680
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  SURE/utils/custom_mlp.py,sha256=HuNb7f8-6RFjsvfEu1XOuNpLrHZkGYHgf8TpJfPSNO0,9382
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  SURE/utils/queue.py,sha256=E_5PA5EWcBoGAZj8BkKQnkCK0p4C-4-xcTPqdIXaPXU,1892
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  SURE/utils/utils.py,sha256=IUHjDDtYaAYllCWsZyIzqQwaLul6fJRvHRH4vIYcR-c,8462
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- sure_tools-2.2.0.dist-info/licenses/LICENSE,sha256=TFHKwmrAViXQbSX5W-NDItkWFjm45HWOeUniDrqmnu0,1065
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- sure_tools-2.2.0.dist-info/METADATA,sha256=qN5WqFDldXTOMaQJ0XBCFxOsLTJrsRqnI2GP7T-47v4,2677
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- sure_tools-2.2.0.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- sure_tools-2.2.0.dist-info/entry_points.txt,sha256=-nJI8rVe_qqrR0HmfAODzj-JNfEqCcSsyVh6okSqyHk,83
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- sure_tools-2.2.0.dist-info/top_level.txt,sha256=BtFTebdiJeqra4r6mm-uEtwVRFLZ_IjYsQ7OnalrOvY,5
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- sure_tools-2.2.0.dist-info/RECORD,,
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+ sure_tools-2.2.1.dist-info/licenses/LICENSE,sha256=TFHKwmrAViXQbSX5W-NDItkWFjm45HWOeUniDrqmnu0,1065
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+ sure_tools-2.2.1.dist-info/METADATA,sha256=K-mxVWSx_7BN9A0ihIzfdnTKHEsJEifB_TuD76XX3KI,2677
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+ sure_tools-2.2.1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ sure_tools-2.2.1.dist-info/entry_points.txt,sha256=-nJI8rVe_qqrR0HmfAODzj-JNfEqCcSsyVh6okSqyHk,83
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+ sure_tools-2.2.1.dist-info/top_level.txt,sha256=BtFTebdiJeqra4r6mm-uEtwVRFLZ_IjYsQ7OnalrOvY,5
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+ sure_tools-2.2.1.dist-info/RECORD,,