SURE-tools 2.1.70__py3-none-any.whl → 2.1.71__py3-none-any.whl

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Files changed (7) hide show
  1. SURE/PerturbFlow.py +3 -2
  2. {sure_tools-2.1.70.dist-info → sure_tools-2.1.71.dist-info}/METADATA +1 -1
  3. {sure_tools-2.1.70.dist-info → sure_tools-2.1.71.dist-info}/RECORD +7 -7
  4. {sure_tools-2.1.70.dist-info → sure_tools-2.1.71.dist-info}/WHEEL +0 -0
  5. {sure_tools-2.1.70.dist-info → sure_tools-2.1.71.dist-info}/entry_points.txt +0 -0
  6. {sure_tools-2.1.70.dist-info → sure_tools-2.1.71.dist-info}/licenses/LICENSE +0 -0
  7. {sure_tools-2.1.70.dist-info → sure_tools-2.1.71.dist-info}/top_level.txt +0 -0
SURE/PerturbFlow.py CHANGED
@@ -877,11 +877,12 @@ class PerturbFlow(nn.Module):
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  #counts = self.sigmoid(concentrate)
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  counts = dist.Bernoulli(logits=concentrate).to_event(1).mean
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  elif self.loss_func == 'negbinomial':
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- counts = concentrate.exp()
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  rate = concentrate.exp()
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  theta = dist.DirichletMultinomial(total_count=1, concentration=rate).mean
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- total_count = pyro.param("inverse_dispersion")
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+ #total_count = pyro.param("inverse_dispersion")
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+ store = pyro.get_param_store()
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+ total_count = store['inverse_dispersion']
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  counts = dist.NegativeBinomial(total_count=total_count, probs=theta).to_event(1).mean
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  elif self.loss_func == 'poisson':
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  rate = concentrate.exp()
{sure_tools-2.1.70.dist-info → sure_tools-2.1.71.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.70
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+ Version: 2.1.71
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
{sure_tools-2.1.70.dist-info → sure_tools-2.1.71.dist-info}/RECORD RENAMED
@@ -1,4 +1,4 @@
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- SURE/PerturbFlow.py,sha256=ZK7jtZ9lph5xDbG4e0h9H3w2SrpWcXBEkl5GuhBq8C0,54285
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+ SURE/PerturbFlow.py,sha256=tEEry7hMnbASOiWWP7Q4mvqJ-hC8jg9gp5jkgyU2aAI,54344
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  SURE/SURE.py,sha256=ko15a9BhvUqHviogZ0YCdTQjM-2zqkO9OvHZSpnGbg0,47458
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  SURE/__init__.py,sha256=NOJI_K-eCqPgStXXvgl3wIEMp6d8saMTDYLJ7Ga9MqE,293
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  SURE/assembly/__init__.py,sha256=jxZLURXKPzXe21LhrZ09LgZr33iqdjlQy4oSEj5gR2Q,172
@@ -17,9 +17,9 @@ SURE/utils/__init__.py,sha256=YF5jB-PAHJQ40OlcZ7BCZbsN2q1JKuPT6EppilRXQqM,680
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  SURE/utils/custom_mlp.py,sha256=C0EXLGYsWkUQpEL49AyBFPSzKmasb2hdvtnJfxbF-YU,9282
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  SURE/utils/queue.py,sha256=E_5PA5EWcBoGAZj8BkKQnkCK0p4C-4-xcTPqdIXaPXU,1892
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  SURE/utils/utils.py,sha256=IUHjDDtYaAYllCWsZyIzqQwaLul6fJRvHRH4vIYcR-c,8462
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- sure_tools-2.1.70.dist-info/licenses/LICENSE,sha256=TFHKwmrAViXQbSX5W-NDItkWFjm45HWOeUniDrqmnu0,1065
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- sure_tools-2.1.70.dist-info/METADATA,sha256=3NGlfcfI8WPI91MuJ7mGDVwibv8wrxC06AbCfGz9F94,2678
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- sure_tools-2.1.70.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- sure_tools-2.1.70.dist-info/entry_points.txt,sha256=-nJI8rVe_qqrR0HmfAODzj-JNfEqCcSsyVh6okSqyHk,83
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- sure_tools-2.1.70.dist-info/top_level.txt,sha256=BtFTebdiJeqra4r6mm-uEtwVRFLZ_IjYsQ7OnalrOvY,5
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- sure_tools-2.1.70.dist-info/RECORD,,
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+ sure_tools-2.1.71.dist-info/licenses/LICENSE,sha256=TFHKwmrAViXQbSX5W-NDItkWFjm45HWOeUniDrqmnu0,1065
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+ sure_tools-2.1.71.dist-info/METADATA,sha256=6Ca_cRrdlq0EGEtS0ksVsqzg-3bTBbxa4iFUFk08JeA,2678
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+ sure_tools-2.1.71.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ sure_tools-2.1.71.dist-info/entry_points.txt,sha256=-nJI8rVe_qqrR0HmfAODzj-JNfEqCcSsyVh6okSqyHk,83
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+ sure_tools-2.1.71.dist-info/top_level.txt,sha256=BtFTebdiJeqra4r6mm-uEtwVRFLZ_IjYsQ7OnalrOvY,5
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+ sure_tools-2.1.71.dist-info/RECORD,,