SURE-tools 2.1.49__py3-none-any.whl → 2.1.51__py3-none-any.whl

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Files changed (7) hide show
  1. SURE/PerturbFlow.py +2 -2
  2. {sure_tools-2.1.49.dist-info → sure_tools-2.1.51.dist-info}/METADATA +2 -1
  3. {sure_tools-2.1.49.dist-info → sure_tools-2.1.51.dist-info}/RECORD +7 -7
  4. {sure_tools-2.1.49.dist-info → sure_tools-2.1.51.dist-info}/WHEEL +0 -0
  5. {sure_tools-2.1.49.dist-info → sure_tools-2.1.51.dist-info}/entry_points.txt +0 -0
  6. {sure_tools-2.1.49.dist-info → sure_tools-2.1.51.dist-info}/licenses/LICENSE +0 -0
  7. {sure_tools-2.1.49.dist-info → sure_tools-2.1.51.dist-info}/top_level.txt +0 -0
SURE/PerturbFlow.py CHANGED
@@ -64,7 +64,7 @@ class PerturbFlow(nn.Module):
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  z_dist: Literal['normal','studentt','laplacian','cauchy','gumbel'] = 'normal',
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  loss_func: Literal['negbinomial','poisson','multinomial','bernoulli'] = 'negbinomial',
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  inverse_dispersion: float = 10.0,
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- use_zeroinflate: bool = True,
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+ use_zeroinflate: bool = False,
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  hidden_layers: list = [300],
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  hidden_layer_activation: Literal['relu','softplus','leakyrelu','linear'] = 'relu',
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  nn_dropout: float = 0.1,
@@ -933,7 +933,7 @@ class PerturbFlow(nn.Module):
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  decay_rate: float = 0.9,
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  config_enum: str = 'parallel',
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  threshold: int = 0,
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- use_jax: bool = False):
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+ use_jax: bool = True):
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  """
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  Train the PerturbFlow model.
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{sure_tools-2.1.49.dist-info → sure_tools-2.1.51.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: SURE-tools
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- Version: 2.1.49
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+ Version: 2.1.51
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  Summary: Succinct Representation of Single Cells
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  Home-page: https://github.com/ZengFLab/SURE
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  Author: Feng Zeng
@@ -20,6 +20,7 @@ Requires-Dist: numpy
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  Requires-Dist: scikit-learn
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  Requires-Dist: pandas
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  Requires-Dist: pyro-ppl
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+ Requires-Dist: jax[cuda12]
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  Requires-Dist: leidenalg
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  Requires-Dist: python-igraph
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  Requires-Dist: networkx
{sure_tools-2.1.49.dist-info → sure_tools-2.1.51.dist-info}/RECORD RENAMED
@@ -1,4 +1,4 @@
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- SURE/PerturbFlow.py,sha256=LkJjaMgfklSIEOtC6AY7vOc097d3kHeb94cenuiQv3c,52680
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+ SURE/PerturbFlow.py,sha256=qQYCKLf50KA8xuPBffOen-e04wMEi3ASeDVv-BPbvxc,52680
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  SURE/SURE.py,sha256=ko15a9BhvUqHviogZ0YCdTQjM-2zqkO9OvHZSpnGbg0,47458
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  SURE/__init__.py,sha256=NOJI_K-eCqPgStXXvgl3wIEMp6d8saMTDYLJ7Ga9MqE,293
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  SURE/assembly/__init__.py,sha256=jxZLURXKPzXe21LhrZ09LgZr33iqdjlQy4oSEj5gR2Q,172
@@ -17,9 +17,9 @@ SURE/utils/__init__.py,sha256=YF5jB-PAHJQ40OlcZ7BCZbsN2q1JKuPT6EppilRXQqM,680
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  SURE/utils/custom_mlp.py,sha256=C0EXLGYsWkUQpEL49AyBFPSzKmasb2hdvtnJfxbF-YU,9282
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  SURE/utils/queue.py,sha256=E_5PA5EWcBoGAZj8BkKQnkCK0p4C-4-xcTPqdIXaPXU,1892
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  SURE/utils/utils.py,sha256=IUHjDDtYaAYllCWsZyIzqQwaLul6fJRvHRH4vIYcR-c,8462
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- sure_tools-2.1.49.dist-info/licenses/LICENSE,sha256=TFHKwmrAViXQbSX5W-NDItkWFjm45HWOeUniDrqmnu0,1065
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- sure_tools-2.1.49.dist-info/METADATA,sha256=AAUNMhmAy0DGBC1dAEmUxWk7Ni1N6wrM8dPvJvQUCd4,2651
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- sure_tools-2.1.49.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- sure_tools-2.1.49.dist-info/entry_points.txt,sha256=-nJI8rVe_qqrR0HmfAODzj-JNfEqCcSsyVh6okSqyHk,83
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- sure_tools-2.1.49.dist-info/top_level.txt,sha256=BtFTebdiJeqra4r6mm-uEtwVRFLZ_IjYsQ7OnalrOvY,5
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- sure_tools-2.1.49.dist-info/RECORD,,
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+ sure_tools-2.1.51.dist-info/licenses/LICENSE,sha256=TFHKwmrAViXQbSX5W-NDItkWFjm45HWOeUniDrqmnu0,1065
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+ sure_tools-2.1.51.dist-info/METADATA,sha256=xurQhmv-0FHHED3zJ-fQyuWfK4-kkxLhdlOvbeyc96Q,2678
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+ sure_tools-2.1.51.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ sure_tools-2.1.51.dist-info/entry_points.txt,sha256=-nJI8rVe_qqrR0HmfAODzj-JNfEqCcSsyVh6okSqyHk,83
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+ sure_tools-2.1.51.dist-info/top_level.txt,sha256=BtFTebdiJeqra4r6mm-uEtwVRFLZ_IjYsQ7OnalrOvY,5
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+ sure_tools-2.1.51.dist-info/RECORD,,